genome.fa.s68.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  103  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20351941--20351991	13	3.8	14	84	10	70	0	13	0	86	0.58
20351941--20351984	16	2.8	16	86	13	65	0	11	0	88	0.51
20351950--20351991	12	3.4	12	90	3	66	0	11	0	88	0.53
20359042--20359081	20	2.1	19	86	13	55	30	5	10	55	1.54
20359226--20359262	5	7.0	5	88	11	56	78	0	0	21	0.75
20362168--20362250	43	2.0	42	85	2	112	67	2	7	22	1.27
20362194--20362254	21	2.8	22	78	11	72	63	3	6	26	1.34
20362215--20362256	17	2.3	18	84	8	50	66	0	4	28	1.12
20362229--20362326	14	6.9	14	73	10	83	63	1	4	31	1.20
20362229--20362319	31	3.2	29	80	13	109	62	1	4	31	1.22
20362336--20362371	13	2.8	13	91	4	56	80	5	0	13	0.88
20364777--20364913	3	44.7	3	80	9	109	27	2	2	67	1.17
20364777--20364899	35	3.3	35	77	15	131	26	2	2	68	1.15
20365821--20365955	74	1.9	72	90	7	220	47	6	8	37	1.61
20365892--20366072	59	3.1	56	80	11	188	49	6	9	35	1.60
20365826--20365983	74	2.2	73	85	10	209	51	5	8	34	1.55
20365931--20366067	59	2.3	58	90	3	213	49	4	10	35	1.58
20367978--20368008	14	2.1	15	94	5	55	0	12	3	83	0.75
20368764--20369132	84	4.4	84	78	4	318	35	17	15	31	1.92
20368787--20369088	167	1.8	168	83	3	412	37	18	13	30	1.90
20368769--20369132	167	2.2	167	79	4	394	35	17	16	31	1.92
20369130--20369284	84	1.8	84	87	5	233	40	16	14	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20370593--20370650	24	2.5	24	88	8	84	0	18	0	81	0.70
20376562--20376608	17	2.8	16	81	9	58	0	4	12	82	0.80
20377753--20377793	20	2.1	21	86	13	61	29	4	9	56	1.53
20377944--20377983	18	2.2	19	91	8	66	77	0	5	17	0.94
20377939--20377989	24	2.2	23	86	10	68	78	0	5	15	0.93
20377944--20377989	18	2.5	18	83	13	58	78	0	6	15	0.95
20377949--20377989	19	2.2	19	86	8	57	78	0	7	14	0.96
20380921--20380955	2	18.0	2	94	5	63	48	0	0	51	1.00
20381745--20381792	24	2.0	24	84	8	62	45	2	8	43	1.45
20382050--20382082	2	16.5	2	93	0	57	51	0	3	45	1.16
20386192--20386228	6	6.2	6	90	0	56	29	48	0	21	1.50
20386194--20386229	18	2.0	18	94	0	63	27	47	0	25	1.52
20389908--20389945	20	2.0	20	89	5	60	60	5	0	34	1.19
20390214--20390296	39	2.1	40	91	4	134	21	65	1	12	1.33
20390233--20390315	19	4.3	19	73	14	71	21	65	1	12	1.33
20390233--20390304	39	1.9	38	86	8	103	23	65	1	9	1.31
20397652--20397710	17	3.4	17	77	17	50	72	5	6	15	1.23
20398647--20398685	19	2.1	19	90	4	62	0	7	7	84	0.77
20399839--20399877	20	1.9	21	89	5	62	33	10	10	46	1.72
20399908--20399947	18	2.2	18	86	8	55	27	2	10	60	1.42
20400023--20400080	5	10.0	6	80	14	52	77	0	5	17	0.94
20400025--20400069	5	8.2	5	83	13	54	77	0	2	20	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20400025--20400079	18	3.2	17	83	14	69	78	0	5	16	0.93
20400030--20400079	23	2.2	22	86	13	66	78	0	6	16	0.95
20400035--20400081	19	2.5	19	82	6	60	78	0	6	14	0.93
20404144--20404174	2	15.5	2	93	0	53	51	0	3	45	1.17
20417989--20418013	4	6.2	4	100	0	50	24	0	0	76	0.80
20419551--20419586	18	2.1	17	89	5	54	58	0	0	41	0.98
20424765--20424820	27	2.2	24	80	17	76	30	33	7	28	1.84
20424771--20424856	27	3.2	27	91	0	127	23	33	9	33	1.87
20424771--20424868	27	3.6	27	91	0	124	23	33	9	33	1.86
20424771--20424879	27	4.0	27	91	0	119	22	33	9	35	1.86
20428792--20428831	20	1.9	21	85	10	55	50	5	0	45	1.23
20429724--20429758	18	2.0	17	88	5	52	62	0	0	37	0.95
20432218--20432249	2	16.0	2	93	0	55	50	3	0	46	1.17
20434452--20434527	38	2.0	38	94	0	134	31	5	30	32	1.80
20434802--20434838	17	2.1	18	90	5	58	64	0	0	35	0.94
20435335--20435393	24	2.3	25	78	18	68	44	0	1	54	1.10
20435910--20436067	57	2.7	58	78	11	180	36	13	7	42	1.73
20435910--20436068	58	2.8	56	82	6	187	35	13	7	42	1.73
20436143--20436177	3	11.7	3	100	0	70	68	0	0	31	0.90
20436939--20437139	3	63.7	3	68	24	55	62	1	3	31	1.25
20436974--20437064	47	2.0	47	82	8	116	65	1	4	28	1.18
20436939--20437087	74	2.1	71	83	7	187	63	2	4	30	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436998--20437085	27	3.3	27	80	4	79	64	2	4	28	1.25
20436998--20437122	54	2.2	56	81	6	139	60	1	4	33	1.25
20437027--20437141	27	4.1	27	71	15	85	63	1	3	31	1.21
20437299--20437328	8	3.8	8	95	0	51	6	0	3	90	0.56
20437391--20437710	41	7.8	41	82	7	330	39	21	14	24	1.91
20437541--20437710	43	4.0	44	89	2	231	41	22	13	22	1.88
20438731--20438783	25	2.2	25	86	3	72	7	16	0	75	1.02
20462291--20462349	31	1.9	31	89	0	91	37	10	15	37	1.81
20463019--20463395	189	2.0	190	89	3	573	23	20	5	50	1.68
20465205--20465244	3	14.0	3	89	10	66	70	0	0	30	0.88
20465205--20465244	20	2.0	20	90	9	64	70	0	0	30	0.88
20465205--20465308	23	4.3	23	73	17	86	64	1	3	29	1.22
20465257--20465294	20	1.9	20	84	10	51	65	0	7	26	1.19
20465229--20465350	47	2.5	46	81	13	122	63	2	4	29	1.28
20465267--20465320	23	2.3	23	81	9	65	66	0	7	25	1.17
20466885--20466935	23	2.3	22	80	6	57	17	17	5	58	1.57
20468246--20468278	2	16.5	2	100	0	66	51	0	0	48	1.00
20469257--20469315	31	1.9	31	89	0	91	37	10	15	37	1.81
20469720--20469774	15	3.7	15	75	18	53	63	0	23	12	1.29
20470154--20470211	18	3.2	19	85	7	84	75	3	3	17	1.07
20470154--20470211	19	3.2	18	90	4	91	75	3	3	17	1.07
20470154--20470231	36	2.1	37	84	11	99	75	6	3	14	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20470271--20470329	29	2.0	29	93	0	100	25	47	5	22	1.71
20471323--20471373	26	1.9	27	88	4	77	66	3	0	29	1.09
20471789--20471822	12	2.8	12	90	4	50	67	2	0	29	1.05
20471909--20472262	195	1.8	195	93	0	620	36	10	14	38	1.80
20482177--20482793	48	13.0	47	82	7	712	27	13	22	36	1.92
20482177--20482792	192	3.2	191	84	7	799	27	13	22	36	1.92
20482656--20482845	51	3.8	50	73	7	170	26	14	21	37	1.91
20482976--20483038	18	3.3	19	93	6	110	73	4	4	17	1.19
20482976--20483056	38	2.1	38	86	8	112	74	6	4	14	1.19
20483427--20483474	21	2.3	21	85	0	60	68	8	12	10	1.39
20484147--20484197	26	1.9	27	84	4	68	66	5	0	27	1.14
20484621--20484654	12	2.8	12	90	4	50	67	2	0	29	1.05
20489195--20489230	18	1.9	19	88	5	56	47	5	11	36	1.63
20489155--20489312	59	2.7	60	85	5	223	37	11	5	45	1.62
20490187--20490223	3	12.3	3	100	0	74	67	0	0	32	0.91
20490236--20490273	20	1.9	20	84	10	51	65	0	7	26	1.19
20490236--20490301	23	2.9	23	78	13	73	63	0	9	27	1.24
20490231--20490330	47	2.0	50	83	7	125	64	2	6	28	1.28
20490187--20490353	74	2.3	70	78	10	174	62	2	4	29	1.28
20490237--20490399	23	6.8	23	65	26	63	63	1	4	30	1.26
20491968--20492024	23	2.4	23	83	13	80	12	19	8	59	1.58
20494816--20494878	31	2.0	31	87	0	90	39	9	11	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20495277--20495331	15	3.7	15	75	18	53	63	0	23	12	1.29
20501483--20501558	36	2.1	36	80	4	91	31	36	3	27	1.75
20501446--20501552	18	5.9	18	66	0	61	29	39	4	26	1.76
20503584--20503609	13	2.0	13	100	0	52	23	0	0	76	0.78
20503653--20503697	19	2.5	17	83	16	63	77	4	0	17	0.92
20503653--20503699	18	2.5	19	87	12	71	76	4	0	19	0.95
20504715--20505131	43	9.8	43	80	5	393	45	18	12	23	1.83
20504793--20505139	41	8.4	41	81	7	337	44	19	12	23	1.85
20505477--20505514	20	1.9	20	88	0	58	28	15	15	39	1.89
20506799--20506841	20	2.2	19	91	4	68	11	4	0	83	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113