genome.fa.s68.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  95  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19474653--19474685	15	2.3	15	89	5	50	15	3	15	66	1.37
19474902--19474935	14	2.4	15	90	9	54	67	0	32	0	0.91
19475204--19475249	7	6.1	7	82	12	56	21	0	0	78	0.76
19475205--19475252	4	13.5	4	87	12	54	22	0	0	77	0.78
19475285--19475323	6	6.3	6	88	5	60	15	2	0	82	0.79
19475275--19475324	25	2.0	25	88	7	75	14	8	0	78	0.97
19475285--19475337	25	2.1	25	82	6	63	20	3	0	75	0.96
19475328--19475673	59	5.9	58	83	6	403	45	6	11	36	1.67
19477681--19477747	33	2.0	33	97	0	125	40	10	8	40	1.71
19482056--19482092	13	2.6	15	83	12	51	45	16	0	37	1.47
19492049--19492219	41	4.1	41	87	6	211	23	15	23	36	1.94
19492233--19492276	1	44.0	1	81	0	52	90	6	2	0	0.51
19492279--19492426	40	3.5	41	81	11	167	22	14	23	39	1.91
19492299--19492426	46	2.9	46	83	11	162	23	13	23	39	1.90
19492581--19492624	12	3.6	12	84	3	52	18	0	2	79	0.83
19492579--19492682	20	5.1	20	69	19	63	24	0	1	73	1.00
19492573--19492643	13	5.0	14	73	19	58	18	2	1	77	0.97
19492588--19492675	12	7.8	12	73	19	66	25	1	2	71	1.04
19492608--19492678	27	2.7	26	78	10	72	28	1	1	69	1.06
19492634--19492682	12	4.1	12	84	7	55	28	0	2	69	1.00
19492582--19492682	8	12.2	8	73	16	57	24	0	1	72	1.02
19492736--19492793	22	2.6	23	81	10	66	31	5	5	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19493653--19493798	5	28.0	5	69	15	57	21	4	2	71	1.16
19493702--19493791	28	3.5	26	78	14	73	18	6	1	73	1.11
19493729--19493803	8	8.5	8	72	22	53	16	6	1	76	1.07
19493729--19493798	18	4.1	17	77	20	58	15	5	1	77	1.03
19493716--19493788	23	3.3	21	72	22	60	16	6	1	75	1.09
19493718--19493798	13	5.9	13	68	23	51	17	6	1	75	1.07
19493815--19494154	60	5.7	59	80	12	356	44	6	11	37	1.67
19493813--19494154	119	2.9	114	81	12	379	44	6	11	36	1.67
19495806--19495830	8	3.1	8	100	0	50	60	0	0	40	0.97
19496179--19496232	16	3.3	16	77	10	56	72	0	0	27	0.85
19497735--19497776	17	2.6	16	78	10	50	57	2	0	40	1.12
19501257--19501515	41	6.5	41	87	5	395	52	11	5	31	1.59
19501257--19501513	78	3.2	82	90	5	400	52	11	5	31	1.59
19501195--19501504	100	3.1	100	76	15	291	51	12	5	30	1.63
19501257--19501515	119	2.2	121	90	4	409	52	11	5	31	1.59
19501500--19501633	24	5.8	24	72	17	95	55	6	3	34	1.44
19501529--19501633	47	2.3	45	83	6	122	56	6	1	35	1.37
19501633--19501682	17	2.9	17	76	8	57	46	12	12	30	1.77
19502524--19502569	21	2.2	21	84	7	58	30	4	2	63	1.26
19502531--19502569	20	2.0	20	85	14	55	30	5	0	64	1.15
19502519--19502604	8	11.4	7	71	19	50	32	5	1	60	1.28
19502537--19502594	24	2.3	26	91	5	93	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19502597--19502629	15	2.1	16	88	5	50	18	6	0	75	1.00
19502597--19502635	16	2.5	15	87	8	51	15	7	0	76	0.99
19503365--19503410	16	2.9	16	84	9	51	21	2	0	76	0.90
19503457--19503487	12	2.5	13	94	5	55	19	6	0	74	1.03
19503504--19503834	58	5.7	59	78	12	353	44	6	13	35	1.70
19503504--19503836	118	2.9	116	87	4	483	44	6	13	35	1.70
19507795--19507842	8	5.8	8	77	18	53	77	0	14	8	0.99
19507793--19507826	18	1.9	17	94	5	59	82	0	11	5	0.83
19507795--19507844	26	1.9	26	88	8	75	78	0	14	8	0.97
19507757--19507826	10	7.0	10	71	12	63	74	0	12	12	1.08
19509509--19509816	84	3.7	82	86	4	404	24	14	22	38	1.91
19509512--19509816	125	2.4	126	85	3	402	24	14	22	39	1.91
19509509--19510009	41	12.1	41	82	4	443	24	14	22	37	1.92
19509979--19510194	87	2.5	90	78	9	230	29	16	19	34	1.94
19509844--19510184	82	4.0	84	72	14	234	27	15	19	37	1.92
19509853--19510184	41	7.8	44	74	7	199	28	15	19	36	1.93
19510379--19510484	29	3.6	29	81	10	124	22	1	1	73	1.03
19510369--19510461	36	2.5	37	86	5	136	20	1	1	77	0.89
19510383--19510445	7	8.9	7	91	6	92	23	0	1	74	0.90
19510375--19510536	36	4.8	35	67	23	89	24	2	1	70	1.09
19510377--19510633	14	18.4	14	70	17	69	28	3	2	66	1.19
19510397--19510612	91	2.5	84	76	12	197	27	3	2	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19510559--19510645	20	4.6	18	77	17	79	33	5	0	60	1.20
19510639--19510668	12	2.4	13	94	5	53	16	3	0	80	0.85
19510636--19510680	16	3.1	15	75	24	51	17	4	0	77	0.92
19511527--19511566	9	3.9	10	87	12	55	32	0	0	67	0.91
19511538--19511575	19	2.0	19	85	10	51	34	0	2	63	1.09
19511598--19511636	6	6.3	6	88	5	60	17	2	0	79	0.84
19511654--19511928	58	4.7	57	83	8	347	42	7	14	35	1.74
19511655--19511928	118	2.3	116	90	5	419	42	7	14	35	1.74
19512407--19512441	17	2.1	17	94	0	61	25	20	34	20	1.96
19515858--19515953	27	3.8	26	69	18	85	73	0	17	8	1.06
19515858--19515942	30	2.9	28	81	15	84	74	0	17	8	1.06
19515862--19515904	21	2.2	19	91	8	68	76	0	16	6	0.99
19515862--19515953	38	2.5	35	78	18	96	76	0	16	7	1.01
19515862--19515951	10	9.4	10	69	26	61	76	0	15	7	1.00
19515862--19515951	19	4.8	18	76	15	85	76	0	15	7	1.00
19517619--19518098	41	11.6	41	84	4	473	25	14	20	39	1.91
19517619--19517950	128	2.6	124	85	5	459	24	15	21	38	1.92
19518040--19518278	132	1.8	131	82	8	306	31	15	17	35	1.91
19518440--19518530	7	14.0	6	81	13	85	19	1	1	78	0.88
19518450--19518542	22	4.4	22	81	14	106	21	2	1	75	0.97
19518440--19518539	40	2.5	38	85	11	121	20	2	1	77	0.93
19518444--19518530	34	2.6	32	89	7	120	20	1	1	77	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19518532--19518567	15	2.2	17	90	9	58	27	5	0	66	1.13
19518446--19518591	66	2.3	61	77	10	141	24	2	0	71	1.03
19518526--19518679	28	5.8	27	72	20	87	30	5	1	62	1.28
19518618--19518679	24	2.5	24	89	5	88	35	3	1	59	1.23
19518973--19519433	41	11.1	41	83	5	419	26	14	20	38	1.92
19518973--19519286	128	2.5	123	85	7	418	26	13	21	38	1.90
19518973--19519281	83	3.7	83	86	5	426	25	13	21	39	1.90
19518976--19519433	83	5.5	82	79	10	319	26	14	20	38	1.91
19519468--19519565	45	2.2	43	94	0	142	22	13	24	39	1.90
19519769--19519833	7	9.1	7	80	12	71	23	1	1	73	1.00
19519765--19519845	22	3.7	22	87	11	105	23	1	2	72	1.03
19519757--19519903	28	5.1	28	72	14	102	25	2	1	71	1.05
19519758--19519857	11	8.8	11	71	9	60	23	2	2	73	1.04
19519807--19519966	4	40.5	4	67	16	50	28	3	2	65	1.22
19519831--19519961	46	2.8	47	73	17	130	29	3	3	64	1.24
19519779--19519980	14	13.9	14	69	19	87	29	2	1	65	1.18
19519986--19520016	13	2.4	13	100	0	62	16	6	0	77	0.97
19519983--19520028	15	3.1	16	82	17	55	17	6	0	76	1.00
19520305--19520337	15	2.3	15	89	5	50	15	3	15	66	1.37
19520837--19520878	4	11.5	4	90	10	56	23	0	0	76	0.79
19520911--19520949	6	6.3	6	94	5	69	15	0	0	84	0.62
19520954--19521240	58	4.9	57	80	9	294	45	6	12	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19521150--19521241	27	3.3	27	65	28	66	42	6	14	36	1.71
19520967--19521240	118	2.3	116	87	6	401	44	6	12	35	1.70
19523229--19523295	33	2.0	33	100	0	134	40	11	8	38	1.74
19527625--19527661	13	2.6	15	83	12	51	45	16	0	37	1.47
19538324--19538377	26	2.0	27	85	3	74	51	3	1	42	1.30
19538515--19538556	21	2.0	22	90	4	68	50	0	0	50	1.00
19538754--19538802	16	3.0	16	87	3	53	28	4	0	67	1.09
19539161--19539194	17	2.0	17	94	0	59	47	8	5	38	1.59
19540867--19540981	58	2.0	59	82	5	144	34	19	10	35	1.86
19543251--19543319	35	2.0	35	94	0	120	11	20	21	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113