genome.fa.s68.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  27  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9269262--9269313	15	3.3	15	82	15	68	80	1	1	15	0.88
9269275--9269312	9	4.3	9	83	6	51	84	2	0	13	0.73
9269259--9269305	18	2.6	18	86	3	58	80	2	2	14	0.89
9269264--9269332	26	2.7	26	76	0	75	73	1	2	21	1.04
9269346--9269393	24	1.9	26	87	8	73	64	2	6	27	1.28
9269441--9269498	20	2.8	21	78	7	55	63	3	6	25	1.35
9269587--9269721	64	2.1	65	80	6	150	27	2	3	65	1.23
9269703--9269799	24	3.9	24	71	20	83	26	0	7	65	1.18
9276661--9276693	2	16.5	2	100	0	66	48	0	0	51	1.00
9277607--9277634	2	14.0	2	100	0	56	50	0	0	50	1.00
9283127--9283202	38	2.0	39	84	7	102	55	0	1	43	1.08
9283139--9283193	27	2.1	27	86	3	76	56	0	1	41	1.10
9285518--9285651	58	2.3	57	82	6	153	35	9	5	50	1.58
9285518--9285651	57	2.3	57	81	8	146	35	9	5	50	1.58
9285505--9285836	130	2.6	130	84	8	428	33	10	5	50	1.59
9285763--9285799	16	2.4	16	83	16	51	24	2	5	67	1.25
9285865--9285908	19	2.3	19	84	4	52	79	0	2	18	0.83
9285863--9285913	26	1.9	27	84	11	70	76	0	3	19	0.94
9286841--9287091	45	5.6	44	85	2	306	45	19	11	22	1.83
9288160--9288193	15	2.3	15	90	5	52	5	14	0	79	0.91
9288128--9288189	21	3.1	21	82	8	69	8	17	0	74	1.06
9294177--9294230	18	2.9	18	83	5	63	81	1	1	14	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9294176--9294231	9	6.0	9	76	14	51	80	1	1	16	0.88
9294188--9294237	10	5.0	10	79	15	50	82	0	4	14	0.82
9294350--9294481	58	2.3	56	81	7	149	34	11	4	50	1.59
9294568--9294597	9	3.2	9	95	4	51	66	0	0	33	0.92
9295655--9295721	21	3.2	20	73	18	57	59	2	2	34	1.28
9299142--9299191	25	2.0	25	84	7	66	48	6	0	46	1.27
9302468--9302503	19	1.9	19	88	5	56	52	0	5	41	1.24
9303738--9303786	16	3.1	16	81	0	62	63	0	0	36	0.95
9303737--9303781	8	5.8	8	81	2	56	62	0	0	37	0.96
9303741--9303789	24	2.0	24	88	7	73	59	0	0	40	0.98
9310983--9311068	42	2.0	42	100	0	172	46	12	11	29	1.77
9313652--9313687	2	18.0	2	100	0	72	50	0	0	50	1.00
9315400--9315456	30	1.9	30	100	0	114	42	14	8	35	1.76
9317792--9317823	3	10.7	3	100	0	64	0	34	0	65	0.93
9339062--9339113	27	1.9	27	84	0	68	50	0	0	50	1.00
9339039--9339250	95	2.2	94	79	8	225	43	3	3	49	1.37
9339084--9339261	95	1.9	93	85	2	248	44	3	4	47	1.40
9339305--9339350	21	2.1	23	88	8	69	45	0	0	54	0.99
9343789--9343821	14	2.3	15	89	5	50	27	15	9	48	1.74
9349894--9349919	2	13.0	2	100	0	52	50	0	50	0	1.00
9350590--9350655	32	2.1	32	85	5	89	45	9	1	43	1.44
9350658--9350692	10	3.6	10	88	7	54	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9351214--9351288	28	2.6	29	81	14	84	33	1	1	64	1.11
9358890--9358918	2	14.5	2	100	0	58	48	0	0	51	1.00
9366243--9366270	2	14.0	2	100	0	56	50	0	0	50	1.00
9372111--9372545	217	2.0	217	99	0	852	30	12	17	39	1.87
9373154--9373557	201	2.0	202	99	0	792	34	14	17	33	1.90
9385516--9385544	5	6.0	5	92	8	51	20	0	0	79	0.74
9385906--9385957	17	3.1	16	78	13	52	32	0	1	65	1.04
9385953--9385977	13	1.9	13	100	0	50	32	4	8	56	1.47
9387636--9387670	2	17.5	2	100	0	70	51	0	0	48	1.00
9390288--9390324	2	18.5	2	100	0	74	48	0	0	51	1.00
9391764--9391794	7	4.4	7	91	0	53	54	0	0	45	0.99
9397565--9397604	16	2.5	16	83	0	53	40	5	0	55	1.22
9398627--9398704	27	2.7	29	76	15	81	56	0	2	41	1.13
9399008--9399049	17	2.7	16	79	13	52	50	2	0	47	1.14
9399041--9399079	15	2.6	16	92	8	64	69	0	0	30	0.89
9399547--9399580	17	2.0	18	88	11	54	76	0	0	23	0.79
9399568--9399599	16	2.0	16	93	0	55	65	0	0	34	0.93
9400038--9400095	21	2.7	21	82	12	73	46	0	1	51	1.11
9400044--9400129	39	2.3	35	75	13	84	46	0	1	52	1.08
9400038--9400113	21	3.7	21	75	16	70	47	0	1	51	1.09
9400703--9400756	17	3.2	16	75	10	63	79	5	1	12	0.98
9404779--9404911	68	2.0	64	91	5	212	44	9	28	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9405076--9405111	18	1.9	19	94	5	65	19	0	8	72	1.10
9405527--9405591	17	3.8	18	80	12	75	56	0	0	43	0.99
9407465--9407517	18	2.9	19	80	8	65	64	1	0	33	1.05
9411196--9411246	25	2.0	25	96	0	93	23	13	11	50	1.74
9418943--9418982	21	1.9	21	94	0	71	52	25	2	20	1.59
9418943--9418988	21	2.2	21	88	0	65	54	26	2	17	1.54
9418941--9418995	21	2.7	21	72	13	60	50	27	1	20	1.58
9419849--9419900	12	4.2	12	72	2	50	42	0	1	55	1.10
9421191--9421668	59	8.1	58	82	9	511	34	12	6	46	1.69
9421191--9421631	180	2.5	177	90	3	668	34	13	6	45	1.70
9421687--9421734	18	2.8	17	81	9	53	79	2	6	12	1.01
9421666--9421752	23	3.9	21	71	15	59	75	2	8	13	1.11
9422170--9422204	11	3.2	11	95	0	61	14	14	42	28	1.84
9422267--9422304	19	2.0	20	89	5	60	34	13	15	36	1.87
9422496--9422532	19	1.9	19	100	0	74	40	5	27	27	1.78
9422800--9422849	19	2.6	21	84	15	72	64	2	0	34	1.05
9422799--9422933	22	6.0	22	66	25	59	65	3	0	30	1.15
9422780--9422973	78	2.5	78	79	12	179	68	4	2	24	1.19
9422928--9422974	10	4.9	10	82	7	53	80	6	2	10	0.96
9435272--9435296	2	12.5	2	100	0	50	48	0	0	52	1.00
9436143--9436167	2	12.5	2	100	0	50	48	0	0	52	1.00
9436627--9436668	15	2.9	16	76	23	56	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9438701--9438782	4	19.2	4	70	20	51	29	2	2	65	1.18
9439763--9439813	4	13.5	4	78	12	54	21	0	1	76	0.88
9439758--9439872	16	7.6	15	71	21	64	20	0	4	73	1.05
9439831--9439885	6	9.0	6	76	11	58	16	3	0	80	0.86
9439831--9439880	13	3.9	13	77	17	52	16	4	0	80	0.87
9439856--9439901	21	2.2	20	84	3	65	19	4	2	73	1.10
9439894--9440074	56	3.2	56	81	10	208	46	7	10	34	1.67
9447245--9447326	43	1.9	42	85	7	112	36	10	17	35	1.85
9447593--9447907	43	7.1	43	82	10	361	25	16	23	35	1.95
9447718--9447825	53	2.0	53	92	3	182	29	16	23	30	1.96
9447632--9447903	137	2.0	141	88	2	417	25	16	22	35	1.95
9447675--9447868	96	2.0	95	92	4	318	27	17	22	32	1.96
9447914--9447963	6	8.7	6	88	2	68	88	10	2	0	0.61
9448079--9448204	25	5.2	25	68	14	68	23	3	3	69	1.20
9448156--9448246	4	21.8	4	71	20	62	30	0	3	65	1.08
9448295--9448329	16	2.1	16	89	5	52	14	14	8	62	1.53
9449187--9449306	16	7.5	15	71	20	75	20	4	4	70	1.21
9449186--9449228	4	10.8	4	85	9	61	20	2	2	74	1.04
9449259--9449290	13	2.5	13	95	5	57	15	0	0	84	0.63
9449341--9449985	60	10.7	59	84	5	774	47	6	11	34	1.66
9449341--9449985	122	5.3	121	87	4	792	47	6	11	34	1.66
9458480--9458614	14	9.2	14	65	25	57	30	2	4	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9458489--9458566	4	18.5	4	70	19	52	29	2	2	65	1.19
9458478--9458612	17	6.9	20	70	22	65	31	2	4	62	1.27
9459548--9459598	4	13.5	4	82	12	63	19	0	1	78	0.85
9459549--9459671	11	11.5	11	70	20	59	20	1	4	73	1.07
9459543--9459595	27	2.0	26	96	3	97	16	0	3	79	0.88
9459621--9459680	5	11.4	5	80	16	68	15	3	1	80	0.93
9459620--9459672	6	8.7	6	76	12	54	15	3	0	81	0.83
9459618--9459680	31	2.0	31	85	11	85	14	3	1	80	0.90
9459628--9459683	25	2.2	25	87	6	78	16	1	1	80	0.88
9459683--9459866	60	3.1	59	83	7	232	47	5	10	35	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113