genome.fa.s68.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  98  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19813125--19813231	22	5.1	22	79	8	100	69	2	2	25	1.16
19813130--19813245	53	2.1	55	80	12	125	67	3	3	25	1.22
19813127--19813245	55	2.1	55	80	10	123	68	3	3	25	1.21
19813181--19813255	25	3.1	25	76	17	70	65	4	1	29	1.19
19813126--19813259	21	6.8	19	74	21	84	66	3	3	26	1.25
19813320--19813373	18	3.1	18	76	7	58	77	3	1	16	1.00
19813333--19813371	16	2.4	17	87	8	55	79	2	0	17	0.84
19820920--19820945	13	2.0	13	100	0	52	76	7	0	15	0.99
19820982--19821229	59	4.1	61	87	7	326	35	12	6	45	1.68
19821249--19821299	8	5.9	8	78	19	50	80	1	3	13	0.94
19821249--19821314	21	3.3	21	78	17	54	78	1	6	13	1.00
19821332--19821372	10	4.2	10	81	6	57	78	2	2	17	0.98
19822200--19822299	31	3.2	30	75	9	94	70	3	9	18	1.27
19822201--19822270	23	2.8	25	82	10	81	70	2	10	17	1.28
19822200--19822299	30	3.2	31	75	12	98	70	3	9	18	1.27
19822324--19822357	3	11.7	3	93	6	61	67	0	0	32	0.91
19822325--19822353	14	2.1	14	100	0	58	65	0	0	34	0.93
19822611--19822647	4	9.8	4	82	11	51	0	0	18	81	0.70
19822608--19822667	8	7.8	8	83	12	54	3	0	11	85	0.72
19822608--19822668	12	4.8	12	77	16	52	3	0	11	85	0.72
19822676--19823165	41	12.0	41	90	3	756	35	24	17	22	1.95
19824375--19824430	20	2.8	21	86	7	73	7	14	0	78	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19828203--19828228	13	2.0	13	100	0	52	76	7	0	15	0.99
19828266--19828516	59	4.1	63	80	10	243	35	10	6	48	1.63
19828266--19828491	122	1.9	118	82	9	287	34	11	6	46	1.66
19828522--19828660	10	13.8	10	67	17	56	72	2	5	18	1.17
19828511--19828554	23	1.9	23	86	9	63	75	0	9	15	1.05
19828535--19828602	19	3.3	21	78	13	54	77	2	5	13	1.06
19828750--19828781	5	6.4	5	92	0	55	0	37	40	21	1.54
19831530--19831567	18	2.1	18	100	0	76	50	5	15	28	1.66
19832969--19833312	50	6.9	50	71	12	183	27	9	18	44	1.80
19833766--19833868	36	2.8	36	86	1	134	19	23	10	46	1.81
19835627--19835663	17	2.1	18	90	5	58	70	0	0	29	0.88
19841852--19841894	20	2.1	20	82	4	50	39	0	6	53	1.28
19842466--19842741	85	3.3	84	81	6	308	47	6	3	42	1.48
19843618--19843723	18	6.7	16	79	17	100	59	0	0	39	1.04
19843622--19843722	15	7.7	13	68	23	61	58	0	0	40	1.05
19843638--19843737	46	2.1	45	85	9	128	62	1	1	36	1.09
19843727--19843851	16	7.4	16	67	14	63	44	1	1	52	1.20
19843809--19843851	17	2.7	15	75	10	50	44	0	0	55	0.99
19845887--19845936	11	4.7	10	81	18	57	82	2	2	14	0.86
19845892--19845943	19	2.7	20	82	5	63	80	3	0	15	0.85
19845903--19845936	9	3.6	9	88	11	50	88	0	0	11	0.52
19845892--19845938	16	3.0	16	78	12	53	82	2	0	14	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19846825--19846886	20	3.1	20	79	9	81	62	0	8	29	1.23
19846882--19846967	3	26.7	3	73	17	50	65	1	4	29	1.20
19846833--19846967	20	6.8	20	68	15	75	63	0	5	29	1.23
19846874--19846982	29	3.9	29	76	7	100	66	0	4	27	1.17
19846921--19846977	12	4.3	13	71	20	55	70	0	1	28	0.98
19846949--19847019	16	4.7	15	78	10	65	76	1	1	21	0.95
19846920--19846996	19	4.1	18	75	15	66	74	0	1	24	0.90
19846920--19847027	40	2.8	39	78	13	98	74	0	1	23	0.98
19846957--19847019	8	8.1	8	77	10	60	76	1	1	20	0.96
19846949--19847022	7	10.0	7	79	5	58	77	1	1	20	0.92
19847309--19847471	41	3.9	41	81	7	168	39	21	12	26	1.88
19848503--19848563	11	5.4	11	81	18	72	8	11	0	80	0.91
19848493--19848563	11	6.3	11	78	13	56	7	11	0	81	0.86
19848494--19848563	9	7.8	9	72	12	54	7	11	0	81	0.87
19848488--19848538	21	2.5	20	87	6	68	7	11	0	80	0.90
19848481--19848543	30	2.1	29	82	11	74	9	12	0	77	0.98
19848488--19848563	24	3.6	21	80	17	79	7	13	0	78	0.94
19859018--19859257	58	4.1	56	82	12	272	40	10	7	42	1.66
19859018--19859242	119	1.9	118	87	8	332	39	10	7	43	1.67
19859254--19859331	10	8.2	9	83	7	84	79	1	2	16	0.91
19859259--19859425	19	9.4	18	69	19	86	73	2	1	22	1.04
19859266--19859331	5	13.6	5	81	12	84	80	0	3	16	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19859350--19859416	13	4.8	13	82	12	80	74	0	1	23	0.90
19859351--19859424	4	19.5	4	85	10	86	75	0	1	22	0.88
19859563--19859616	24	2.4	22	90	6	81	81	0	12	5	0.85
19859564--19859615	11	4.5	11	79	9	59	82	0	13	3	0.80
19859565--19859630	30	2.2	30	84	7	82	80	0	13	6	0.89
19860637--19860962	85	4.0	84	79	8	291	24	16	19	38	1.92
19860656--19861008	41	8.6	41	77	8	315	23	15	20	40	1.91
19860735--19860932	76	2.5	76	83	6	216	24	15	19	40	1.90
19861190--19861264	21	3.6	20	74	15	53	28	2	1	68	1.12
19861241--19861424	27	7.3	26	75	14	104	30	4	2	61	1.29
19861241--19861397	47	3.0	52	73	16	128	30	4	3	61	1.31
19861321--19861424	3	32.7	3	75	14	77	30	3	1	63	1.23
19861308--19861371	23	2.7	23	79	11	76	28	6	0	65	1.16
19862190--19862326	6	23.3	6	80	12	65	23	1	5	70	1.16
19862190--19862328	12	12.6	11	79	11	83	23	1	5	70	1.15
19862190--19862326	15	9.3	15	65	17	65	23	1	5	70	1.16
19862261--19862328	5	12.6	5	90	9	91	17	1	0	80	0.78
19862332--19862571	58	4.2	56	79	8	232	42	7	12	37	1.71
19862356--19862568	58	3.7	58	84	4	270	42	6	14	37	1.70
19864414--19864794	57	6.7	57	80	7	391	36	12	7	43	1.70
19864682--19864716	19	1.9	18	88	11	54	48	0	5	45	1.26
19864414--19864794	171	2.2	171	84	4	495	36	12	7	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19864811--19864968	5	31.8	5	66	23	59	74	3	4	17	1.11
19864841--19864901	17	3.5	17	79	16	54	80	1	4	13	0.95
19864806--19864888	40	2.1	40	84	10	109	77	2	6	14	1.07
19865825--19865903	20	3.8	20	69	22	65	69	1	5	24	1.16
19865857--19865979	26	5.2	24	70	21	91	65	4	4	26	1.28
19865862--19865978	45	2.5	46	77	14	116	64	4	4	26	1.30
19865985--19866017	8	3.7	9	88	12	50	84	0	15	0	0.61
19866052--19866129	15	5.6	15	67	26	55	71	2	3	21	1.14
19866055--19866141	19	4.6	18	72	14	68	72	3	3	20	1.14
19866439--19866481	1	43.0	1	80	0	50	0	0	9	90	0.45
19866430--19866473	20	2.2	20	95	0	79	0	2	9	88	0.59
19866430--19866481	9	5.7	9	84	11	70	0	1	9	88	0.59
19866494--19866576	43	2.0	41	88	4	121	36	20	18	25	1.95
19866576--19866654	41	1.9	41	92	0	131	39	22	16	21	1.92
19866505--19866649	73	2.0	75	80	5	170	40	20	17	21	1.91
19867654--19867699	8	5.8	8	92	0	74	8	4	0	86	0.68
19876546--19876598	27	2.0	28	88	7	83	77	0	15	7	0.98
19877606--19877886	41	6.7	41	82	5	287	24	16	21	37	1.94
19877599--19877838	83	2.9	82	84	7	288	25	18	20	35	1.95
19878067--19878288	3	71.7	3	68	19	77	29	4	1	64	1.22
19878082--19878115	17	2.0	17	88	0	50	23	2	0	73	0.97
19878149--19878205	23	2.6	21	78	10	60	28	3	1	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19878130--19878234	48	2.2	48	83	8	124	27	5	1	64	1.26
19879109--19879166	6	10.2	6	87	9	70	17	3	0	79	0.87
19879114--19879165	5	9.6	5	88	12	68	17	1	0	80	0.80
19879192--19879468	58	4.8	58	88	3	389	42	6	12	38	1.68
19879522--19879559	16	2.4	16	86	4	51	7	10	2	78	1.04
19880856--19880931	38	2.0	38	94	0	134	32	27	6	32	1.83
19883687--19883730	2	22.0	2	88	0	61	43	4	2	50	1.35
19885739--19885926	100	1.9	100	81	7	231	56	9	13	19	1.64
19886214--19886423	28	7.6	28	74	9	128	46	15	9	29	1.77
19886270--19886422	54	2.8	55	81	4	164	45	15	10	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113