genome.fa.s68.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  11  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3514555--3514595	22	1.9	21	90	5	64	31	0	4	63	1.15
3514993--3515020	14	2.0	14	100	0	56	57	0	0	42	0.99
3515617--3515668	20	2.6	18	80	17	50	9	13	3	73	1.23
3516047--3516076	3	10.3	3	92	7	53	70	0	0	30	0.88
3519004--3519054	18	2.7	18	75	18	50	31	11	19	37	1.88
3521657--3521856	109	1.8	109	84	2	276	44	13	5	38	1.65
3526216--3526295	42	1.9	42	89	5	126	27	16	36	20	1.93
3537596--3537633	2	19.0	2	100	0	76	50	0	50	0	1.00
3539257--3539297	18	2.3	19	79	12	50	43	0	0	56	0.99
3551846--3551892	22	2.1	22	88	7	69	21	6	0	72	1.07
3555932--3555965	3	11.3	3	100	0	68	64	0	0	35	0.94
3574570--3574626	21	2.6	22	75	5	62	45	0	0	54	0.99
3575668--3575710	16	2.8	16	82	3	52	30	0	13	55	1.39
3575763--3575809	21	2.2	21	100	0	94	8	4	34	53	1.51
3575763--3575816	21	2.6	21	93	0	81	9	3	31	55	1.49
3576040--3576078	20	2.1	19	86	13	55	28	2	0	69	1.02
3576168--3576236	3	22.7	3	76	14	61	26	4	1	68	1.17
3576169--3576206	19	2.0	20	89	5	60	28	5	0	65	1.14
3576170--3576236	25	2.7	24	78	17	66	25	4	1	68	1.17
3578343--3578384	19	2.2	20	83	12	52	52	4	0	42	1.22
3578991--3579039	20	2.5	20	90	6	73	51	2	0	46	1.12
3585049--3585162	52	2.2	52	83	0	138	42	7	21	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3588595--3588643	25	2.0	25	88	8	73	36	8	10	44	1.68
3588885--3588924	21	1.9	21	85	10	55	72	2	5	20	1.15
3595334--3595364	2	15.5	2	93	0	53	54	0	0	45	0.99
3596006--3596074	26	2.7	26	82	10	79	42	1	0	56	1.08
3600273--3600307	18	1.9	18	88	0	52	54	11	0	34	1.37
3601359--3601404	12	4.0	12	75	11	51	34	2	0	63	1.07
3601355--3601401	22	2.1	22	92	0	76	29	2	0	68	1.02
3602774--3602806	10	3.3	10	91	8	50	15	0	3	81	0.80
3602795--3602836	15	2.9	15	80	16	52	16	2	14	66	1.35
3602800--3602838	15	2.7	15	88	4	53	17	2	15	64	1.41
3603214--3603740	48	10.9	49	74	9	359	40	19	11	28	1.86
3603240--3603743	96	5.2	97	78	7	452	40	19	10	29	1.85
3603215--3603743	194	2.7	193	81	7	563	40	19	11	28	1.86
3603282--3603738	242	1.9	242	82	8	572	41	19	10	28	1.85
3603649--3603739	46	2.0	45	82	2	110	48	18	7	25	1.75
3604547--3604581	8	4.4	8	86	13	54	14	0	2	82	0.77
3604547--3604579	15	2.1	16	94	5	59	12	0	3	84	0.72
3608050--3608109	31	1.9	31	83	6	77	63	3	20	13	1.43
3615707--3615755	22	2.3	22	82	3	64	67	2	0	30	1.02
3617033--3617064	2	16.0	2	100	0	64	50	0	0	50	1.00
3618968--3619135	86	2.0	86	81	2	203	44	13	9	33	1.76
3621663--3621717	11	5.1	11	74	10	51	20	0	1	78	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3621815--3621876	18	3.3	18	75	18	63	66	6	1	25	1.25
3622008--3622048	3	13.7	3	100	0	82	68	0	0	31	0.90
3622327--3622384	15	3.9	15	76	10	57	51	24	0	24	1.48
3624698--3624767	33	2.1	33	86	5	97	61	4	1	32	1.24
3634080--3634279	101	2.0	101	94	0	355	36	15	17	31	1.90
3634269--3634294	2	13.0	2	100	0	52	50	0	0	50	1.00
3636120--3636199	34	2.5	31	77	8	79	65	0	0	35	0.93
3636669--3636715	16	2.9	16	87	9	69	34	0	0	65	0.93
3636662--3636715	22	2.5	22	84	0	72	35	0	0	64	0.94
3636662--3636715	6	9.7	6	76	15	53	35	0	0	64	0.94
3641233--3641264	15	2.0	17	88	11	50	28	12	0	59	1.34
3643521--3643545	13	1.9	13	100	0	50	44	0	0	56	0.99
3646385--3646434	3	16.7	3	87	0	73	60	34	2	4	1.27
3648582--3648650	16	4.3	17	75	17	67	62	0	0	37	0.96
3648582--3648630	8	6.1	8	82	17	66	63	0	0	36	0.95
3648580--3648636	24	2.4	25	91	8	100	63	0	0	36	0.95
3649049--3649107	28	2.0	30	81	12	70	47	5	3	44	1.42
3649138--3649185	21	2.3	21	85	7	62	54	0	2	43	1.12
3649472--3649496	13	1.9	13	100	0	50	92	0	8	0	0.40
3651777--3651830	15	3.9	14	76	19	51	31	1	3	62	1.23
3651801--3651834	16	2.2	15	89	5	50	32	0	5	61	1.20
3651887--3651943	26	2.2	25	93	3	96	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3655597--3655627	6	5.0	6	96	4	53	32	16	35	16	1.91
3666018--3666052	2	17.5	2	100	0	70	48	0	51	0	1.00
3667079--3667151	29	2.5	30	88	6	105	27	16	6	49	1.71
3685316--3685412	50	1.9	50	89	0	149	20	21	16	41	1.90
3686301--3686535	119	2.0	119	99	0	461	29	16	15	38	1.90
3694957--3695013	27	2.1	28	83	3	71	45	1	3	49	1.29
3695215--3695253	21	1.9	19	90	10	60	20	2	2	74	1.06
3695941--3696031	30	3.0	31	79	12	82	47	2	0	50	1.13
3695966--3696031	32	2.1	31	83	5	80	50	0	0	50	1.00
3700387--3700419	2	16.5	2	100	0	66	51	0	0	48	1.00
3700502--3700541	18	2.2	18	86	0	53	20	25	35	20	1.96
3716576--3716614	18	2.1	19	85	4	53	38	10	25	25	1.87
3718973--3719037	25	2.6	25	85	0	94	33	6	38	21	1.78
3719270--3719309	11	3.6	11	86	0	62	20	0	30	50	1.49
3719349--3719492	52	2.8	52	89	2	209	38	8	26	27	1.85
3720240--3720302	33	1.9	33	93	0	108	12	15	12	58	1.63
3721866--3721909	21	2.0	23	86	8	65	27	20	11	40	1.86
3726206--3726433	111	2.0	112	97	2	431	31	9	14	44	1.77
3730155--3730210	29	2.0	29	96	3	105	28	14	33	23	1.94
3735516--3735595	40	2.0	40	97	0	151	46	18	12	22	1.83
3740412--3740501	30	3.0	30	82	6	110	55	2	4	37	1.32
3741119--3741173	28	2.0	28	85	7	76	63	9	0	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3741133--3741216	36	2.4	37	82	9	95	67	7	0	25	1.15
3749417--3749446	3	10.0	3	100	0	60	33	0	0	66	0.92
3751586--3751622	2	18.5	2	94	0	65	51	2	0	45	1.15
3755050--3755149	50	2.0	50	94	0	173	31	9	16	44	1.78
3761597--3761623	2	13.5	2	100	0	54	0	48	0	51	1.00
3762630--3762671	15	2.8	15	76	23	52	50	0	7	42	1.30
3763463--3763499	18	2.2	18	90	9	60	43	0	0	56	0.99
3766430--3766476	3	16.0	3	91	4	51	57	0	0	42	0.98
3772421--3772532	54	2.1	55	81	5	129	56	6	10	26	1.57
3773035--3773083	26	1.9	25	83	4	62	40	0	2	57	1.10
3775562--3775647	28	2.9	30	79	10	97	52	0	0	47	1.00
3775595--3775632	14	2.5	15	87	8	51	47	0	0	52	1.00
3775562--3775647	30	2.9	29	77	10	93	52	0	0	47	1.00
3775621--3775652	15	2.0	17	88	11	50	65	0	0	34	0.93
3775515--3775886	186	2.0	186	100	0	744	46	8	5	39	1.57
3775748--3775833	28	2.9	30	79	10	97	52	0	0	47	1.00
3775781--3775818	14	2.5	15	87	8	51	47	0	0	52	1.00
3775748--3775833	30	2.9	29	77	10	93	52	0	0	47	1.00
3775807--3775838	15	2.0	17	88	11	50	65	0	0	34	0.93
3776256--3776340	41	2.1	41	82	4	109	40	9	7	43	1.64
3778942--3778967	3	8.7	3	100	0	52	34	34	0	30	1.58
3786407--3786441	3	11.7	3	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3792402--3792430	9	3.2	9	100	0	58	20	34	0	44	1.52
3792441--3793166	335	2.1	338	81	6	837	30	15	14	39	1.88
3794571--3794835	135	2.0	135	99	0	521	38	21	11	28	1.89
3794952--3794988	2	18.5	2	100	0	74	51	0	0	48	1.00
3802603--3802760	81	2.0	81	89	0	244	32	16	21	29	1.95
3802458--3802903	225	2.0	224	84	3	592	34	17	19	28	1.94
3804827--3804851	13	1.9	13	100	0	50	52	0	0	48	1.00
3804823--3804872	23	2.2	23	82	7	57	58	2	0	40	1.10
3806178--3806240	31	2.0	31	96	0	117	39	17	15	26	1.90
3807728--3807768	20	2.2	19	86	8	57	58	12	2	26	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113