genome.fa.s68.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  20  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6879682--6879836	78	2.0	78	91	2	249	23	32	25	18	1.97
6879732--6879955	119	1.9	117	94	1	394	23	33	24	18	1.97
6879849--6880115	80	3.3	80	95	0	480	22	32	25	18	1.97
6880010--6880233	119	1.9	118	98	0	430	22	34	25	17	1.96
6879684--6880337	279	2.4	278	92	2	1104	23	34	24	17	1.96
6880128--6880337	79	2.6	79	94	0	366	22	35	24	17	1.95
6880312--6880387	25	3.0	25	100	0	152	15	44	23	15	1.85
6883730--6883779	22	2.2	22	82	3	55	26	0	2	72	0.96
6883788--6883844	23	2.5	22	94	5	105	68	0	0	31	0.90
6885726--6885766	22	1.9	22	85	5	57	56	12	14	17	1.68
6889573--6889671	24	4.2	23	74	14	76	36	1	4	58	1.24
6893317--6893346	14	2.1	14	93	0	51	36	30	3	30	1.74
6895264--6895713	222	2.0	222	99	0	882	31	11	19	37	1.88
6901794--6901855	12	5.3	12	79	11	67	59	0	0	40	0.97
6901794--6901860	22	3.0	23	75	20	70	61	0	0	38	0.96
6901770--6901861	34	2.9	30	76	16	87	60	0	0	39	0.97
6902189--6902219	2	15.5	2	100	0	62	51	0	0	48	1.00
6904362--6904398	18	2.1	18	89	0	56	27	13	18	40	1.88
6911228--6911530	151	2.0	151	97	0	570	38	15	16	30	1.89
6917074--6917143	30	2.4	28	75	13	70	35	24	4	35	1.75
6932448--6932483	17	2.1	17	89	5	54	77	2	16	2	1.00
6944858--6944892	17	2.0	17	88	5	52	8	5	0	85	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6948067--6948100	3	11.3	3	100	0	68	67	0	32	0	0.91
6957173--6957199	14	1.9	14	100	0	54	66	18	7	7	1.40
6966540--6966583	21	2.1	21	86	0	61	47	9	2	40	1.48
6968412--6968485	34	2.3	31	77	11	78	55	1	0	43	1.08
6968436--6968534	17	5.7	17	72	15	78	51	0	2	46	1.12
6968561--6968639	5	16.0	5	72	17	58	43	0	2	54	1.14
6968561--6968608	20	2.4	20	100	0	96	39	0	4	56	1.19
6968582--6968640	14	4.0	14	79	16	57	45	0	1	52	1.10
6968607--6968662	18	3.1	19	80	15	55	51	0	1	46	1.11
6968563--6968661	16	6.0	16	76	18	64	47	0	3	49	1.17
6968578--6968663	45	1.9	45	85	4	120	47	0	2	50	1.14
6972600--6972633	2	17.0	2	100	0	68	50	0	0	50	1.00
6982943--6982991	2	25.0	2	91	4	82	51	2	0	46	1.12
6987677--6987701	2	12.5	2	100	0	50	48	0	0	52	1.00
7004721--7004818	29	3.5	29	78	5	96	54	5	7	33	1.50
7013285--7013334	23	2.2	23	85	0	64	46	2	0	52	1.12
7017049--7017080	6	5.3	6	96	0	55	46	34	18	0	1.49
7019637--7019672	3	12.0	3	100	0	72	66	0	0	33	0.92
7020570--7020628	14	4.1	14	72	16	50	72	5	1	20	1.12
7021741--7021770	10	3.1	10	95	4	53	36	0	0	63	0.95
7021743--7021772	9	3.2	9	95	4	51	36	0	0	63	0.95
7026641--7026793	76	2.0	77	94	2	272	45	9	12	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7039578--7039620	19	2.3	19	88	11	63	41	0	0	58	0.98
7070221--7070267	2	23.5	2	95	0	85	0	46	0	53	1.00
7074647--7074710	21	3.0	22	76	15	62	37	3	3	56	1.31
7074761--7074803	15	2.9	15	85	0	59	51	0	0	48	1.00
7077973--7078016	16	2.8	16	79	10	54	47	0	0	52	1.00
7078029--7078070	13	3.3	13	86	3	59	52	0	0	47	1.00
7078034--7078081	13	3.6	14	81	13	57	58	0	0	41	0.98
7079060--7079090	6	5.2	6	96	0	53	48	22	16	12	1.80
7085552--7085589	18	2.1	19	90	5	60	47	2	0	50	1.15
7085552--7085595	19	2.2	20	84	11	56	43	2	0	54	1.12
7085763--7085801	19	2.0	20	85	5	53	51	2	0	46	1.14
7089926--7089978	17	3.3	15	82	10	61	50	1	0	47	1.12
7094259--7094283	7	3.6	7	100	0	50	84	0	16	0	0.63
7096712--7096769	27	2.2	26	84	3	71	46	5	6	41	1.53
7096891--7096941	23	2.1	23	85	7	75	49	0	0	50	1.00
7097720--7097759	2	20.0	2	100	0	80	50	0	0	50	1.00
7100803--7100844	11	3.8	11	75	12	50	28	0	2	69	1.01
7101529--7101579	27	2.0	25	88	7	75	62	0	0	37	0.95
7105611--7105652	11	3.8	11	75	12	50	26	0	4	69	1.08
7106903--7106946	14	3.1	14	93	3	70	61	4	0	34	1.16
7112002--7112055	23	2.3	22	78	12	54	59	3	5	31	1.38
7118424--7118456	2	16.5	2	93	0	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7141254--7141281	14	2.0	14	100	0	56	42	14	14	28	1.84
7142683--7142721	2	19.5	2	94	0	69	48	0	0	51	1.00
7145525--7145549	2	12.5	2	100	0	50	52	0	0	48	1.00
7151404--7151429	2	13.0	2	100	0	52	50	0	0	50	1.00
7153904--7154045	11	13.5	10	71	15	90	36	3	9	50	1.51
7153904--7154014	21	5.2	21	83	3	107	36	3	9	50	1.53
7153904--7154001	42	2.4	42	84	1	126	36	4	10	48	1.56
7154361--7154592	22	10.5	22	73	7	148	38	8	6	46	1.61
7154522--7154662	74	1.9	74	84	8	189	41	8	4	46	1.54
7154630--7154693	22	2.9	22	86	6	85	46	10	3	39	1.55
7154792--7154857	21	3.1	20	79	12	69	37	10	4	46	1.59
7154793--7155065	22	12.3	22	70	11	155	38	9	4	47	1.56
7158949--7158992	20	2.1	21	88	12	65	59	0	2	38	1.10
7168919--7169087	84	2.0	84	100	0	338	34	14	26	24	1.93
7170867--7170926	28	2.1	28	84	0	75	43	10	23	23	1.83
7190032--7190085	2	26.5	2	85	14	67	50	5	0	44	1.25
7192259--7192356	36	3.0	30	72	18	79	65	2	2	30	1.15
7196681--7196723	19	2.1	21	87	8	63	44	2	0	53	1.13
7196804--7196878	18	3.9	18	78	18	80	50	2	0	46	1.15
7196927--7196963	17	2.1	19	90	10	60	56	0	0	43	0.99
7197673--7197716	9	4.9	9	86	8	63	63	2	0	34	1.07
7197673--7197716	19	2.4	18	88	7	63	63	2	0	34	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7197679--7197743	24	2.6	25	76	11	62	61	1	1	35	1.15
7198786--7198820	17	2.1	17	89	5	54	31	0	2	65	1.07
7200134--7200162	2	14.5	2	100	0	58	51	0	0	48	1.00
7229165--7229196	3	10.7	3	93	0	55	68	0	0	31	0.90
7234299--7234398	45	2.2	46	83	1	121	42	6	5	47	1.50
7234647--7234697	9	5.3	9	78	15	50	21	0	1	76	0.88
7234645--7234709	31	2.2	29	81	10	69	24	3	1	70	1.10
7236652--7237234	294	2.0	293	96	0	1085	29	21	12	36	1.90
7251047--7251073	12	2.2	12	100	0	54	92	7	0	0	0.38
7256784--7256834	24	2.1	24	100	0	102	7	7	19	64	1.44
7258117--7258141	7	3.6	7	100	0	50	16	0	0	84	0.63
7258767--7258829	33	1.9	32	87	9	92	42	6	6	44	1.55
7266565--7266599	17	2.1	17	100	0	70	40	11	34	14	1.82
7277074--7277098	3	8.3	3	100	0	50	0	36	0	64	0.94
7287061--7287089	12	2.3	13	94	5	51	72	0	0	27	0.85
7291302--7291330	8	3.6	8	100	0	58	34	0	0	65	0.93
7292241--7292306	21	3.0	23	77	20	77	50	0	0	50	1.00
7292297--7292349	22	2.4	23	81	12	67	50	7	0	41	1.30
7292371--7292410	21	1.9	21	85	10	55	55	5	0	40	1.22
7293169--7293208	17	2.4	17	87	8	55	45	2	0	52	1.14
7295027--7295094	30	2.3	29	80	7	73	48	5	2	42	1.42
7295073--7295132	22	2.7	22	84	2	75	45	1	3	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7299437--7299461	9	2.8	9	100	0	50	20	0	0	80	0.72
7300557--7300599	14	3.2	13	83	9	59	83	0	16	0	0.64
7303053--7303234	91	2.0	92	93	2	312	41	12	8	37	1.73
7311335--7311392	20	2.8	22	82	10	77	29	0	0	70	0.87
7311341--7311391	26	2.0	26	85	14	70	29	0	0	70	0.87
7311338--7311393	21	2.7	22	76	20	66	28	0	0	71	0.86
7315860--7315885	7	3.7	7	100	0	52	0	0	26	73	0.84
7319935--7320084	75	2.0	75	98	0	291	20	15	34	30	1.93
7320592--7320635	22	2.0	22	90	4	70	47	2	2	47	1.27
7320588--7320633	15	3.0	15	77	3	56	43	2	2	52	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113