genome.fa.s68.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  26  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8957044--8957071	14	2.0	14	100	0	56	50	0	0	50	1.00
8957168--8957221	27	2.0	27	82	3	65	42	0	3	53	1.18
8962503--8962534	12	2.6	13	85	14	50	37	0	0	62	0.95
8962504--8962536	11	3.0	11	87	12	50	33	0	0	66	0.92
8975764--8975841	34	2.3	34	90	0	120	33	20	8	37	1.84
8978006--8978064	18	3.5	18	68	25	56	6	13	8	71	1.30
8981169--8981226	30	1.9	30	89	0	89	46	1	1	50	1.22
8981171--8981244	30	2.4	30	84	4	85	48	2	1	47	1.24
8985538--8985576	18	2.2	17	86	13	53	2	35	0	61	1.10
8989938--8989985	22	2.1	24	85	14	66	50	0	0	50	1.00
8991207--8991240	2	17.0	2	87	0	50	44	0	5	50	1.26
8999808--9000249	225	2.0	227	95	0	798	39	7	7	44	1.62
9001068--9001097	2	15.0	2	100	0	60	50	0	0	50	1.00
9002020--9002056	17	2.1	19	85	10	51	75	2	2	18	1.04
9003789--9003861	24	3.1	24	80	5	78	41	5	2	50	1.40
9017422--9017448	6	4.5	6	100	0	54	85	0	0	14	0.61
9017473--9017501	12	2.3	13	94	5	51	51	0	0	48	1.00
9017742--9017788	21	2.2	22	88	3	69	78	6	2	12	1.02
9030477--9030548	25	2.8	26	81	4	85	50	0	2	47	1.15
9030477--9030548	26	2.8	25	79	8	83	50	0	2	47	1.15
9030511--9030629	16	7.3	16	69	14	64	48	1	3	46	1.28
9030532--9030583	17	3.1	17	75	10	52	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9030539--9030597	17	3.4	17	77	11	57	49	0	1	49	1.11
9030648--9030848	15	13.9	15	69	19	124	42	0	2	53	1.20
9030619--9030870	28	9.4	27	72	18	140	42	0	1	54	1.17
9030698--9030733	12	3.0	12	88	11	56	47	0	0	52	1.00
9033480--9033522	15	2.9	15	86	10	61	18	2	2	76	1.00
9034039--9034083	23	2.0	23	82	8	56	37	0	0	62	0.96
9034062--9034136	29	2.6	28	82	14	100	50	1	0	48	1.09
9036148--9036191	19	2.3	19	84	7	63	65	0	6	27	1.17
9037371--9037409	20	2.0	20	90	10	62	51	20	5	23	1.67
9037545--9037590	18	2.6	18	92	0	74	50	21	6	21	1.71
9039160--9039335	87	2.0	87	93	0	298	27	10	25	37	1.88
9041183--9041238	28	2.0	28	96	0	103	46	3	12	37	1.59
9041461--9041566	56	1.9	56	86	5	153	36	5	13	44	1.67
9047992--9048033	3	14.0	3	100	0	84	66	0	0	33	0.92
9048937--9048996	32	1.9	31	83	10	77	41	1	0	56	1.09
9057329--9057370	21	2.0	21	86	4	59	30	7	0	61	1.22
9058088--9058127	20	2.0	20	90	9	64	20	2	12	65	1.38
9058593--9058658	21	3.1	21	74	8	62	51	6	6	36	1.51
9059446--9059489	10	4.3	10	82	5	52	54	6	2	36	1.40
9059457--9059554	21	4.7	21	72	19	80	48	11	6	33	1.63
9059554--9059704	78	1.9	80	82	6	191	45	7	5	41	1.56
9060315--9060383	21	3.3	21	74	11	70	44	13	8	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9060297--9060417	42	3.0	41	73	8	104	47	9	7	35	1.63
9060398--9060452	27	2.0	27	89	0	83	50	5	5	38	1.48
9060426--9060575	79	1.9	80	84	5	205	47	8	4	40	1.54
9058246--9061482	871	3.8	850	79	9	2982	44	7	8	39	1.64
9064033--9064121	42	2.1	44	85	4	119	38	16	23	21	1.93
9066241--9066275	2	17.5	2	100	0	70	51	0	0	48	1.00
9076611--9076635	2	12.5	2	100	0	50	48	0	0	52	1.00
9082594--9082668	32	2.3	32	88	0	105	41	20	10	28	1.85
9087161--9087189	2	14.5	2	100	0	58	48	0	0	51	1.00
9088077--9088101	2	12.5	2	100	0	50	52	0	0	48	1.00
9089225--9089279	28	2.0	28	82	13	69	18	18	7	56	1.64
9090320--9090349	2	15.0	2	92	0	51	46	0	3	50	1.18
9092496--9092542	18	2.7	17	77	12	51	68	6	2	23	1.24
9097012--9097062	22	2.3	22	79	3	57	47	13	1	37	1.55
9103660--9103725	19	3.5	19	72	17	50	53	1	0	45	1.09
9103749--9103808	31	2.0	30	90	3	93	55	3	0	41	1.16
9103762--9103825	31	2.1	29	83	16	78	54	0	0	45	0.99
9114749--9114804	29	1.9	29	92	0	94	41	7	35	16	1.75
9114932--9114974	10	4.5	10	81	18	56	32	0	0	67	0.91
9114932--9114974	20	2.3	19	92	8	70	32	0	0	67	0.91
9115000--9115036	19	1.9	19	88	0	56	54	0	0	45	1.00
9122432--9122478	18	2.7	17	77	12	51	68	6	2	23	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9123739--9123808	35	2.0	35	97	0	131	41	0	15	42	1.47
9123831--9123856	13	2.0	13	100	0	52	30	0	15	53	1.42
9131334--9131372	13	3.0	13	84	0	51	87	2	10	0	0.65
9132633--9132658	13	2.0	13	100	0	52	46	0	0	53	1.00
9132706--9132739	10	3.5	10	88	8	52	32	0	0	67	0.91
9138455--9138714	70	3.3	78	83	12	356	37	11	20	31	1.88
9144792--9144838	4	11.8	4	100	0	94	51	23	0	25	1.49
9149244--9149284	7	6.0	7	78	16	50	31	0	0	68	0.90
9149242--9149284	13	3.2	13	87	12	61	34	0	0	65	0.93
9149297--9149329	14	2.5	13	90	9	50	36	12	6	45	1.66
9158053--9158079	14	1.9	14	100	0	54	59	0	0	40	0.98
9158449--9158496	6	8.0	6	81	9	62	77	2	2	18	0.97
9165033--9165065	15	2.3	15	89	5	50	42	24	6	27	1.78
9170465--9170577	56	2.0	56	94	0	199	37	15	13	33	1.87
9175140--9175169	8	3.8	8	90	0	51	26	23	36	13	1.92
9183402--9183461	27	2.2	27	82	11	70	30	1	1	66	1.11
9183440--9183493	22	2.4	23	79	11	60	29	1	5	62	1.28
9190234--9190286	22	2.3	24	81	12	67	39	0	3	56	1.17
9191042--9191066	13	1.9	13	100	0	50	32	0	0	68	0.90
9192826--9192923	30	3.3	29	76	18	94	43	0	0	56	0.99
9192816--9192924	32	3.5	31	75	16	102	44	0	0	55	0.99
9193472--9193515	20	2.1	21	83	4	54	29	0	4	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9197561--9197587	2	13.5	2	100	0	54	48	0	0	51	1.00
9205344--9205374	2	15.5	2	93	0	53	51	0	0	48	1.00
9205955--9205989	2	17.0	2	88	5	52	48	5	0	45	1.26
9209072--9209159	29	3.0	30	73	6	90	46	1	3	48	1.26
9210690--9210735	2	23.0	2	100	0	92	50	0	0	50	1.00
9211707--9211737	4	7.8	4	100	0	62	25	22	0	51	1.48
9211735--9211765	2	15.5	2	100	0	62	48	0	0	51	1.00
9212216--9212251	3	12.0	3	100	0	72	66	0	0	33	0.92
9214166--9214190	1	25.0	1	100	0	50	100	0	0	0	0.00
9214926--9215431	252	2.0	252	100	0	1012	35	22	13	29	1.92
9218438--9218481	19	2.3	19	88	4	61	4	6	15	72	1.22
9220547--9220662	56	2.1	56	96	0	214	50	20	12	17	1.78
9244979--9245011	15	2.2	15	94	0	57	30	48	3	18	1.63
9245578--9245620	18	2.4	17	81	11	50	72	20	2	4	1.14
9247213--9247258	23	1.9	25	83	16	62	32	0	0	67	0.91
9249636--9249693	30	2.0	29	86	10	82	53	3	3	39	1.35
9249682--9249758	36	2.1	37	86	11	106	62	6	1	29	1.28
9250864--9250888	10	2.5	10	100	0	50	16	0	0	84	0.63
9250910--9251028	10	11.7	10	69	13	73	43	2	5	48	1.38
9250908--9250988	11	7.6	11	70	5	51	45	2	3	48	1.33
9250908--9250975	11	6.5	11	75	14	54	41	2	4	51	1.37
9251055--9251103	19	2.5	19	80	9	55	36	2	8	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9251654--9251699	16	2.9	16	80	0	56	39	6	2	52	1.40
9255069--9255109	21	2.0	21	85	9	57	29	0	2	68	1.03
9255178--9255220	21	2.1	20	86	4	59	65	0	2	32	1.06
9262087--9262130	11	3.5	13	78	15	56	52	15	0	31	1.44
9265123--9265172	20	2.5	21	87	6	68	30	0	6	64	1.18
9269059--9269140	29	2.9	27	80	8	101	63	1	2	32	1.15
9269098--9269146	8	5.4	9	76	23	50	69	0	0	30	0.89
9269077--9269114	20	1.9	20	84	10	51	57	2	2	36	1.26
9269060--9269146	28	3.1	27	83	6	111	65	1	1	32	1.07
9269262--9269312	8	6.2	8	80	8	59	82	1	1	13	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113