genome.fa.s68.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  102  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20272194--20272235	11	3.8	11	93	0	75	50	28	0	21	1.49
20272194--20272236	22	2.0	22	100	0	86	48	27	0	23	1.51
20273109--20273265	52	3.0	51	82	3	188	27	24	8	39	1.84
20273290--20273320	11	2.8	11	100	0	62	51	29	0	19	1.47
20274607--20274728	63	2.0	63	85	3	167	36	4	13	45	1.63
20275430--20275705	58	4.8	58	92	3	459	37	13	7	41	1.74
20275729--20275797	5	13.0	5	82	8	75	75	0	5	18	1.00
20275732--20275784	6	9.5	6	85	6	60	79	0	3	16	0.88
20275820--20275870	3	16.0	3	88	8	66	70	0	0	29	0.87
20275820--20275870	15	3.2	16	86	8	77	70	0	0	29	0.87
20276289--20276351	31	2.0	31	87	6	92	46	20	11	22	1.82
20276687--20276732	23	1.9	23	82	8	56	63	0	6	30	1.20
20276710--20276885	20	9.6	18	69	17	80	67	2	3	26	1.20
20276740--20276842	4	27.0	4	74	16	62	66	0	3	30	1.10
20276748--20276835	3	26.7	3	76	19	54	65	0	3	30	1.09
20276728--20276842	32	3.8	32	76	13	91	65	0	4	30	1.12
20276710--20276851	56	2.6	55	78	5	139	66	0	4	28	1.15
20276748--20276835	27	3.2	27	78	12	106	65	0	3	30	1.09
20277082--20277244	45	3.6	45	83	8	206	41	21	13	23	1.88
20277216--20277471	41	6.1	42	79	8	222	34	19	16	29	1.94
20277171--20277401	127	1.8	128	86	5	342	36	19	15	28	1.93
20277082--20277471	84	4.5	82	75	11	257	38	20	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20278483--20278525	16	2.8	16	89	6	63	9	11	0	79	0.95
20278489--20278540	22	2.5	21	79	14	63	9	13	0	76	1.01
20285754--20285784	15	2.1	15	93	0	53	45	6	29	19	1.75
20289000--20289143	74	1.9	74	90	2	227	38	15	5	40	1.70
20289071--20289263	59	3.3	58	90	4	309	37	13	6	41	1.72
20289071--20289286	59	3.8	56	84	9	249	38	12	6	42	1.70
20289287--20289333	6	8.2	6	88	4	62	78	0	2	19	0.85
20289282--20289346	5	12.4	5	78	12	60	75	0	4	20	0.98
20289284--20289406	10	12.6	10	70	17	57	67	3	3	26	1.21
20289802--20289836	12	2.9	12	88	12	54	51	17	8	22	1.72
20290191--20290259	20	3.4	19	70	18	59	62	0	8	28	1.25
20290190--20290259	22	3.3	21	69	23	65	62	0	8	28	1.24
20290173--20290253	42	1.9	42	85	9	112	64	2	8	24	1.35
20290255--20290313	17	3.6	17	73	19	63	64	0	5	30	1.15
20291361--20291407	22	2.1	22	84	7	60	34	17	19	29	1.94
20291519--20291875	84	4.3	83	80	6	380	36	18	14	30	1.91
20291551--20291852	167	1.8	167	84	5	412	38	18	12	30	1.88
20291863--20291927	31	2.1	31	91	0	103	27	12	23	36	1.90
20295874--20296156	88	3.2	87	87	2	404	35	16	15	32	1.90
20296181--20296254	22	3.4	22	84	0	85	32	14	20	32	1.93
20296332--20296387	22	2.5	22	82	5	60	30	14	23	32	1.94
20296455--20296515	22	2.8	22	80	5	70	31	14	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20296201--20296578	127	3.0	127	86	5	537	33	15	17	32	1.92
20296967--20296991	10	2.5	10	100	0	50	0	16	0	84	0.63
20297136--20297181	18	2.6	18	78	0	56	45	13	15	26	1.82
20297344--20297422	41	1.9	41	86	0	113	31	12	22	32	1.92
20297540--20297908	33	11.3	33	68	11	159	29	13	20	36	1.91
20297540--20297941	65	6.1	66	75	10	281	29	13	19	37	1.90
20297567--20297941	67	5.7	65	72	12	216	29	13	19	37	1.90
20298125--20298149	10	2.5	10	100	0	50	0	16	0	84	0.63
20298289--20298324	18	2.0	18	100	0	72	38	11	22	27	1.88
20298772--20299024	33	7.8	33	73	10	200	28	14	20	35	1.93
20298771--20299024	65	3.9	65	77	8	221	29	14	20	35	1.93
20298949--20299053	34	3.1	34	75	15	110	29	12	18	40	1.87
20299694--20299741	12	4.3	12	76	23	52	8	14	0	77	0.99
20299695--20299734	21	1.9	21	90	10	64	10	15	0	75	1.05
20299766--20299804	19	2.1	19	95	0	69	5	12	10	71	1.28
20300121--20300160	20	2.0	20	90	0	62	2	2	15	80	0.93
20300270--20300317	16	2.8	17	84	15	64	2	16	2	79	0.93
20300269--20300312	15	2.8	16	82	6	54	4	15	2	77	1.04
20301155--20301190	18	1.9	19	88	5	56	2	13	0	83	0.76
20301152--20301191	21	2.0	21	85	5	55	5	12	0	82	0.82
20302809--20302846	4	9.5	4	88	0	58	47	0	28	23	1.52
20304478--20304980	202	2.5	202	82	2	604	42	9	13	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20307438--20307475	8	4.9	8	87	3	51	42	0	2	55	1.14
20308254--20308288	15	2.3	15	85	14	54	45	2	0	51	1.16
20308297--20308341	21	2.1	21	83	4	54	37	8	2	51	1.46
20311726--20311765	22	1.9	22	90	10	66	67	7	7	17	1.38
20311747--20311792	18	2.5	19	82	13	60	71	4	4	19	1.20
20312747--20312797	25	2.1	25	81	3	59	5	15	3	74	1.16
20318632--20318769	63	2.2	63	85	2	197	32	5	14	47	1.68
20319272--20319296	11	2.3	11	100	0	50	0	24	0	76	0.80
20319643--20319687	23	2.0	23	82	8	56	68	4	6	20	1.29
20320058--20320103	22	2.0	22	83	4	56	39	15	15	30	1.88
20320084--20320578	84	5.9	84	80	3	424	37	16	15	30	1.90
20320090--20320578	251	1.9	251	80	4	567	37	16	15	30	1.90
20321915--20321955	12	3.5	12	90	6	66	0	14	0	85	0.60
20321910--20321956	11	3.8	12	83	11	60	0	14	0	85	0.61
20325112--20325148	20	1.9	20	88	5	58	13	8	5	72	1.24
20325741--20325786	24	1.9	24	82	8	58	41	4	8	45	1.55
20326039--20326073	2	17.5	2	93	0	61	51	0	2	45	1.16
20332289--20332323	18	1.9	18	94	0	61	34	5	31	28	1.81
20332218--20332319	36	3.0	33	73	11	98	32	6	28	32	1.83
20332667--20332703	6	6.2	6	90	0	56	29	48	0	21	1.50
20332669--20332704	18	2.0	18	94	0	63	27	47	0	25	1.52
20336388--20336425	20	2.0	20	89	5	60	60	5	0	34	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20336664--20336768	38	2.7	39	84	7	108	21	62	0	14	1.37
20336681--20336768	38	2.4	38	88	9	130	22	62	1	13	1.37
20338955--20339034	38	2.1	39	81	9	103	30	23	16	30	1.96
20339139--20339171	17	1.9	17	88	11	50	21	3	3	72	1.11
20339167--20339233	13	5.0	13	73	12	55	28	1	1	68	1.07
20339240--20339369	28	4.8	27	76	16	126	31	4	1	62	1.25
20339223--20339319	28	3.7	25	82	14	115	31	5	3	59	1.35
20339249--20339327	24	3.1	24	82	14	97	35	3	0	60	1.15
20339638--20339688	24	2.1	25	82	10	61	29	1	13	54	1.50
20340255--20340313	9	6.6	8	76	19	55	15	3	0	81	0.82
20340259--20340314	5	11.0	5	81	11	53	16	3	0	80	0.85
20340258--20340308	6	8.5	6	80	20	54	13	3	0	82	0.81
20341117--20341188	4	18.5	4	77	8	53	23	2	1	72	1.06
20341135--20341188	28	1.9	28	85	7	74	27	1	1	68	1.10
20341134--20341189	24	2.3	26	87	9	82	28	1	1	67	1.10
20341206--20341265	17	3.7	15	78	14	57	13	5	0	81	0.84
20341282--20341492	114	1.8	115	89	6	338	43	8	12	36	1.73
20341282--20341492	58	3.7	58	91	3	329	43	8	12	36	1.73
20341988--20342230	127	1.9	128	84	2	328	34	13	17	34	1.89
20342343--20342495	80	1.9	80	90	2	245	39	11	13	35	1.81
20342506--20342561	22	2.4	24	79	11	71	39	10	19	30	1.86
20342423--20342658	104	2.3	104	86	4	316	36	11	18	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20342903--20342948	18	2.6	18	89	0	65	43	15	19	21	1.87
20346143--20346266	3	41.7	3	81	12	123	27	2	2	67	1.15
20346221--20346292	18	4.1	18	87	3	67	25	4	0	70	1.04
20347151--20347316	74	2.3	76	86	10	231	50	4	9	36	1.55
20348646--20348791	63	2.3	63	83	2	197	32	4	14	47	1.65
20349669--20349724	29	1.9	29	82	7	69	73	5	5	16	1.21
20350112--20350479	83	4.4	83	77	5	332	35	17	15	30	1.92
20350117--20350479	167	2.2	167	80	4	412	35	17	15	30	1.92
20350445--20350506	30	2.0	31	87	3	90	27	14	24	33	1.94
20351940--20351984	17	2.8	15	78	15	54	0	13	0	86	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113