genome.fa.s68.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  37  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10777456--10777487	16	2.1	16	88	11	50	71	3	0	25	1.00
10777750--10777810	26	2.3	26	83	5	79	55	4	0	39	1.21
10777750--10777818	26	2.7	25	79	4	75	57	4	0	37	1.18
10778230--10778261	1	32.0	1	93	0	55	0	3	0	96	0.20
10788488--10788518	12	2.6	12	94	0	53	22	0	3	74	0.96
10794536--10794667	15	8.7	15	72	6	79	20	1	27	50	1.57
10794556--10794680	46	2.8	46	81	4	139	21	1	28	48	1.59
10794556--10794645	16	5.9	15	72	12	67	20	1	28	50	1.55
10795142--10795185	21	2.1	21	82	0	52	65	6	0	27	1.17
10795152--10795197	21	2.2	21	84	0	56	71	8	0	19	1.11
10795716--10795740	12	2.1	12	100	0	50	0	8	0	92	0.40
10795915--10795941	2	13.5	2	100	0	54	0	0	51	48	1.00
10796440--10796484	15	3.1	14	84	9	54	31	2	0	66	1.04
10796449--10796492	15	2.9	15	83	9	54	29	2	0	68	1.02
10796444--10796493	18	2.8	17	85	8	64	30	2	0	68	1.01
10804036--10804089	23	2.3	23	78	12	58	61	1	0	37	1.07
10803227--10804142	221	4.2	217	75	8	633	51	5	11	32	1.60
10804366--10805058	214	3.2	215	77	8	684	52	6	10	30	1.61
10804434--10805088	216	3.0	214	78	8	485	52	6	9	30	1.60
10805259--10805312	20	2.6	22	80	8	60	55	3	1	38	1.28
10805906--10805953	21	2.3	20	82	10	53	62	2	2	33	1.18
10805139--10806051	217	4.2	214	76	10	701	51	6	10	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10807001--10807039	10	3.9	10	89	0	60	38	12	10	38	1.78
10807001--10807038	20	1.9	20	94	0	67	39	13	10	36	1.79
10811020--10811058	21	1.9	21	89	5	62	46	5	2	46	1.38
10811714--10811771	26	2.3	25	80	14	66	43	0	5	51	1.24
10816778--10816831	27	1.9	29	81	7	67	59	11	0	29	1.32
10817921--10817961	14	2.9	15	78	10	50	53	0	0	46	1.00
10817921--10817983	24	2.8	22	77	15	58	52	0	0	47	1.00
10821507--10821560	20	2.7	20	82	5	56	33	0	0	66	0.92
10823490--10823519	12	2.5	12	94	0	51	16	3	6	73	1.18
10823942--10824012	12	6.1	11	88	9	54	67	2	0	29	1.05
10823956--10824013	3	19.0	3	92	3	98	65	0	0	34	0.93
10835999--10836127	41	3.2	41	83	4	172	24	10	18	46	1.80
10836221--10836778	39	14.3	39	78	8	474	26	10	21	42	1.84
10836260--10836811	196	2.8	192	84	4	649	26	11	21	41	1.86
10836957--10836987	3	10.7	3	93	6	55	32	0	0	67	0.91
10837245--10837298	24	2.2	24	86	0	72	74	11	7	7	1.23
10837416--10837527	51	2.2	52	87	4	156	33	12	15	39	1.85
10837845--10837874	12	2.5	12	94	0	51	16	3	6	73	1.18
10838320--10838354	11	3.1	11	91	4	52	74	0	0	25	0.82
10838753--10838803	3	17.0	3	100	0	102	66	0	0	33	0.92
10840237--10840263	2	13.5	2	100	0	54	48	0	0	51	1.00
10841312--10841357	2	23.0	2	95	0	83	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10842567--10842604	3	12.7	3	100	0	76	65	0	0	34	0.93
10842591--10842635	16	2.9	16	83	9	58	51	0	6	42	1.28
10844161--10844289	21	6.6	19	70	21	74	27	1	3	67	1.15
10844240--10844282	17	2.3	19	84	11	54	32	2	2	62	1.20
10845326--10845394	6	11.3	6	73	18	54	14	4	1	79	0.95
10845327--10845379	27	1.9	28	88	11	83	13	5	1	79	0.99
10845328--10845401	21	3.7	20	81	12	73	14	5	1	78	1.00
10845326--10845385	11	5.5	11	76	13	61	13	5	1	80	0.96
10845373--10845406	17	2.0	17	88	0	50	17	5	0	76	0.98
10845411--10846246	58	13.9	58	84	9	963	45	7	12	33	1.71
10845409--10846246	121	7.0	119	86	8	1119	45	7	12	33	1.71
10845418--10846246	179	4.6	178	90	4	1197	45	7	12	34	1.71
10847447--10847476	14	2.1	14	93	0	51	80	0	16	3	0.85
10847650--10847684	8	4.2	8	88	3	52	88	8	0	2	0.61
10847651--10847690	16	2.5	16	79	0	53	82	10	2	5	0.91
10850113--10850154	20	2.0	21	90	4	68	50	2	0	47	1.14
10852995--10853036	21	2.0	21	95	0	75	42	16	23	16	1.88
10853938--10853967	2	15.0	2	92	0	51	50	3	0	46	1.18
10855187--10855322	3	48.7	3	65	21	55	31	2	4	61	1.31
10855225--10855280	5	11.4	5	85	11	80	39	1	1	57	1.20
10855298--10855332	17	2.1	17	94	0	61	14	2	0	82	0.77
10855792--10855830	20	1.9	21	84	5	53	20	2	20	56	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10856105--10856177	19	3.9	19	76	7	69	19	1	4	75	1.04
10856116--10856190	37	2.0	37	84	5	98	20	1	5	73	1.10
10856184--10856220	14	2.5	15	86	8	58	21	5	0	72	1.04
10860940--10860982	10	4.3	9	83	16	50	81	2	11	4	0.93
10860926--10860974	21	2.3	22	82	3	64	81	6	8	4	0.97
10861725--10861837	55	2.1	55	82	0	136	23	20	13	43	1.86
10862003--10862101	8	12.1	8	68	16	60	30	6	7	56	1.50
10862901--10862931	14	2.2	14	94	0	53	22	0	0	77	0.77
10862969--10863003	14	2.4	15	90	4	54	20	8	2	68	1.29
10864132--10864261	56	2.3	56	82	0	152	33	16	23	26	1.96
10864199--10864377	83	2.2	83	79	6	193	27	15	24	32	1.95
10864431--10864547	56	2.1	55	84	7	148	32	17	17	32	1.93
10865164--10865297	72	1.9	71	82	1	169	27	14	16	41	1.88
10885632--10885735	34	3.0	34	80	4	111	48	2	2	46	1.32
10895526--10895563	19	2.0	20	84	5	51	31	0	2	65	1.06
10896175--10896211	19	1.9	19	100	0	74	35	10	16	37	1.83
10896768--10896860	28	3.2	28	83	6	96	62	0	1	36	1.03
10901730--10901793	32	2.1	30	82	11	76	45	1	6	46	1.37
10901923--10901977	18	2.9	19	76	17	60	49	0	0	50	1.00
10930592--10930630	20	2.1	18	85	9	51	48	0	5	46	1.24
10930835--10930873	19	2.1	19	85	9	53	35	2	0	61	1.10
10934722--10934767	18	2.4	20	75	7	51	45	2	2	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10936862--10936928	18	3.7	18	75	11	73	26	5	14	52	1.65
10940079--10940134	29	2.0	27	89	6	85	62	1	0	35	1.06
10944219--10944301	42	2.0	42	90	2	132	45	19	8	26	1.78
10944366--10944888	99	5.3	99	80	6	511	42	18	13	24	1.87
10944284--10944858	199	2.9	199	81	2	523	42	18	13	25	1.86
10944777--10944825	24	2.1	23	88	3	71	44	14	14	26	1.83
10944769--10945008	134	1.8	132	82	5	313	43	19	12	24	1.86
10950053--10950105	27	2.0	27	81	7	63	7	3	11	77	1.10
10950065--10950106	22	1.9	22	90	9	68	4	7	9	78	1.08
10950529--10950582	20	2.6	19	81	18	56	5	5	12	75	1.15
10951303--10951356	21	2.5	21	77	11	56	27	3	3	64	1.27
10953054--10953084	11	2.8	11	90	0	53	80	3	0	16	0.83
10953666--10953697	2	16.5	2	93	6	57	46	0	0	53	1.00
10959573--10959693	27	4.3	27	71	15	109	18	54	6	20	1.65
10959624--10959751	66	1.9	66	93	0	220	18	56	7	17	1.63
10964332--10964384	9	5.8	9	75	4	52	60	1	0	37	1.08
10968408--10968449	16	2.6	17	81	11	52	40	9	7	42	1.65
10973322--10973349	3	9.3	3	100	0	56	67	0	0	32	0.91
10973644--10973685	20	2.2	19	91	4	66	35	0	0	64	0.94
10973647--10973685	19	2.1	20	86	13	57	35	0	0	64	0.94
10973639--10973683	18	2.5	18	82	7	56	37	0	0	62	0.96
10974048--10974113	32	2.1	32	97	0	123	36	9	4	50	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10976234--10976270	2	18.5	2	88	0	56	48	2	48	0	1.15
10988467--10988503	13	2.9	13	84	15	51	59	0	0	40	0.97
10988550--10988587	18	2.0	20	85	10	53	31	0	0	68	0.90
10988853--10988902	20	2.5	20	80	9	57	42	0	4	54	1.19
10988895--10988929	18	1.9	18	88	0	52	48	0	0	51	1.00
10991114--10991155	2	21.0	2	100	0	84	50	0	50	0	1.00
10992003--10992049	3	15.7	3	88	0	67	27	0	4	68	1.08
10995197--10995236	19	2.2	19	86	4	55	55	22	10	12	1.67
10999016--10999050	17	2.1	17	100	0	70	34	14	22	28	1.93
11001239--11001283	17	2.6	17	82	0	63	46	2	2	48	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113