genome.fa.s68.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  55  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13915113--13915198	30	2.8	29	84	8	109	48	1	4	45	1.30
13915451--13915494	23	2.0	22	86	4	61	31	2	0	65	1.05
13926105--13926143	21	1.9	20	84	5	51	51	17	10	20	1.74
13930042--13930075	15	2.1	17	89	10	54	29	11	0	58	1.33
13930366--13930407	10	4.2	10	82	8	50	11	2	4	80	0.95
13945915--13946834	160	5.8	159	74	6	611	43	13	8	34	1.75
13945931--13946834	477	1.9	475	81	2	1107	43	13	8	34	1.75
13947360--13947418	30	2.0	30	82	0	73	37	10	1	50	1.46
13959322--13959362	21	2.0	21	85	9	57	65	2	2	29	1.18
13959731--13959830	40	2.5	40	85	3	132	44	21	13	22	1.86
13960795--13960831	18	2.1	18	90	5	58	0	24	0	75	0.80
13960761--13960827	28	2.4	27	75	18	75	4	17	0	77	0.93
13961123--13961194	16	4.3	16	73	15	65	5	15	0	79	0.91
13961128--13961204	19	3.8	20	75	14	70	7	14	0	77	0.97
13961172--13961219	25	1.9	25	86	0	69	14	6	2	77	1.06
13961500--13961538	16	2.4	16	100	0	78	41	15	5	38	1.69
13964218--13964263	22	2.0	23	87	4	67	30	26	8	34	1.86
13966761--13966862	53	1.9	53	89	0	159	31	12	6	49	1.67
13967544--13967587	20	2.2	19	84	8	52	75	9	0	15	1.05
13968463--13968536	21	3.6	21	82	7	82	71	1	5	21	1.13
13968483--13968543	25	2.5	23	76	10	59	70	3	4	21	1.21
13971726--13971765	12	3.2	12	85	3	53	82	2	2	12	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13972044--13972081	20	2.0	20	89	5	60	23	7	21	47	1.77
13973158--13973251	44	2.1	46	84	7	122	59	6	8	25	1.50
13981549--13981579	2	15.5	2	100	0	62	48	0	0	51	1.00
13983485--13983522	20	2.0	20	89	5	60	73	0	7	18	1.06
13984321--13984361	20	2.2	18	86	8	55	65	2	0	31	1.05
13984425--13984467	22	2.0	21	83	16	54	67	2	4	25	1.22
13985060--13985160	21	4.5	21	70	12	67	34	2	7	54	1.45
13985061--13985116	27	2.1	27	93	0	94	30	0	8	60	1.27
13985061--13985101	12	3.0	14	75	17	50	29	0	7	63	1.21
13985088--13985177	42	2.1	42	84	8	112	35	6	7	50	1.58
13985108--13985197	21	4.3	20	75	10	74	37	7	7	46	1.62
13985105--13985197	42	2.2	42	81	7	109	38	7	7	46	1.61
13985513--13985789	22	12.6	22	74	4	137	37	8	8	46	1.64
13985509--13985789	44	6.4	44	71	5	174	38	8	8	45	1.64
13985513--13985789	66	4.2	66	75	1	232	37	8	8	46	1.64
13985509--13985789	88	3.2	88	77	6	228	38	8	8	45	1.64
13986067--13986121	25	2.2	25	87	9	78	36	5	3	54	1.41
13989738--13989784	23	2.0	23	95	0	85	40	0	10	48	1.38
13990450--13990492	14	3.0	15	90	6	63	41	0	16	41	1.48
13991725--13991841	22	5.4	22	70	13	71	35	8	8	47	1.65
13992038--13992095	22	2.5	23	72	5	55	32	13	1	51	1.51
13992125--13992175	22	2.4	22	80	3	59	39	11	3	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13992492--13992662	22	7.7	22	73	8	114	38	7	7	46	1.59
13992492--13992653	66	2.4	67	77	7	161	37	7	8	47	1.61
13992674--13992779	22	5.0	22	78	6	110	41	11	2	44	1.55
13992674--13992787	44	2.7	42	83	4	140	41	10	3	44	1.56
13993924--13993987	22	2.9	21	72	9	56	34	9	10	45	1.72
13993947--13994075	22	5.9	22	71	9	77	37	6	4	50	1.50
13993961--13994090	22	6.0	22	73	5	84	36	8	4	50	1.54
13994157--13994198	22	1.9	22	95	0	75	35	11	4	47	1.61
13994238--13994308	22	3.2	22	74	7	72	36	4	5	53	1.44
13994331--13994386	22	2.5	22	85	5	69	35	16	3	44	1.65
13994375--13994414	21	2.0	20	90	5	62	37	7	12	42	1.71
13994375--13994470	22	4.5	22	75	11	83	36	5	8	50	1.55
13995593--13995635	2	21.0	2	85	4	59	51	4	0	44	1.22
13995593--13995635	14	3.1	14	93	3	70	51	4	0	44	1.22
13999365--13999404	13	3.0	13	85	7	53	50	2	0	47	1.14
14003715--14003760	20	2.4	19	82	13	58	41	0	0	58	0.98
14005572--14005601	11	2.7	11	89	0	51	23	0	13	63	1.29
14005712--14005756	20	2.1	22	88	8	67	66	0	31	2	1.04
14005712--14005756	22	2.2	20	84	15	56	66	0	31	2	1.04
14006856--14006881	10	2.6	10	100	0	52	46	0	0	53	1.00
14010774--14010819	11	4.2	11	86	5	58	86	0	10	2	0.64
14010775--14010824	12	4.2	12	82	5	57	84	0	12	4	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14010776--14010806	16	1.9	16	100	0	62	90	0	9	0	0.46
14010774--14010819	23	2.0	23	87	4	67	86	0	10	2	0.64
14011972--14012131	48	3.5	48	78	7	154	22	12	21	43	1.86
14012283--14012374	42	2.2	42	80	3	105	25	11	20	42	1.86
14012630--14012779	42	3.5	42	79	14	160	24	8	24	42	1.82
14012647--14012834	48	4.0	48	79	12	212	25	11	20	42	1.86
14012615--14012837	90	2.5	90	87	0	329	25	11	21	41	1.87
14012011--14012767	316	2.4	313	84	4	1014	25	11	21	41	1.87
14013131--14013312	49	3.7	49	84	7	228	31	13	19	36	1.90
14013253--14013368	61	1.9	61	83	3	153	30	10	19	39	1.85
14013389--14013563	44	3.9	44	78	9	133	24	15	18	41	1.89
14013535--14013618	44	1.9	43	82	2	105	32	16	19	32	1.94
14013428--14013607	94	1.9	96	80	6	215	27	16	17	37	1.92
14013808--14013833	6	4.3	6	100	0	52	0	15	0	84	0.62
14014688--14014730	23	1.9	22	90	4	68	25	4	2	67	1.22
14014683--14014743	23	2.8	22	78	11	63	22	3	1	72	1.09
14015976--14016018	17	2.5	17	92	0	68	58	18	0	23	1.40
14018462--14018504	17	2.5	17	85	7	61	60	11	0	27	1.31
14020268--14020297	8	3.8	8	90	0	51	0	10	3	86	0.67
14022086--14022136	21	2.4	21	83	0	57	19	5	1	72	1.15
14022303--14022347	2	22.5	2	90	0	72	53	0	0	46	1.00
14023704--14023742	20	1.9	21	89	5	62	53	5	15	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14024217--14024269	21	2.3	23	84	12	74	79	11	3	5	1.03
14025378--14025418	12	3.2	12	83	12	55	24	0	0	75	0.80
14025379--14025422	14	3.3	14	87	12	58	22	0	0	77	0.77
14025907--14025938	12	2.7	12	100	0	64	68	0	0	31	0.90
14025993--14026373	192	2.0	191	89	2	575	36	12	15	35	1.86
14032448--14032785	187	1.8	186	83	3	446	28	18	15	37	1.91
14034187--14034283	39	2.5	39	86	5	124	26	9	17	46	1.78
14034505--14034562	30	2.0	29	82	3	71	41	25	12	20	1.87
14034605--14034645	4	10.8	4	89	10	68	24	0	0	75	0.80
14034605--14034654	18	2.9	18	85	11	61	24	0	4	72	1.02
14034699--14034736	19	2.0	20	85	15	53	26	5	0	68	1.11
14034719--14034771	21	2.4	22	84	6	63	22	7	3	66	1.34
14034719--14034759	21	2.0	21	90	0	64	21	7	2	68	1.26
14034977--14035007	11	2.7	12	90	10	55	45	0	6	48	1.28
14035924--14036007	38	2.2	39	86	4	116	61	3	5	28	1.36
14036742--14036807	34	2.0	34	87	3	98	34	16	19	28	1.94
14037829--14037863	3	12.0	3	93	6	63	68	0	0	31	0.90
14042891--14042923	13	2.6	13	90	4	50	0	18	0	81	0.68
14043573--14043622	2	25.0	2	100	0	100	50	0	50	0	1.00
14046632--14046912	59	4.7	60	86	12	395	33	12	8	45	1.73
14046934--14046971	13	2.8	14	84	8	51	78	0	5	15	0.91
14047059--14047093	5	7.2	5	87	6	54	2	40	40	17	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14047059--14047085	14	1.9	14	100	0	54	3	37	44	14	1.63
14047372--14047409	20	1.9	20	94	0	67	23	18	26	31	1.97
14047373--14047417	20	2.3	20	88	3	65	26	22	24	26	2.00
14056493--14056519	14	1.9	14	100	0	54	40	0	0	59	0.98
14056763--14056820	25	2.3	26	87	3	82	56	1	3	37	1.26
14057194--14057276	27	2.9	27	81	12	85	51	0	0	48	1.00
14057329--14057414	43	2.0	44	88	4	129	32	16	6	44	1.74
14064513--14064564	25	2.1	26	82	10	72	53	13	13	19	1.72
14066438--14066595	59	2.7	59	77	3	174	19	2	18	58	1.50
14069035--14069267	60	3.9	59	83	7	278	33	10	7	47	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113