genome.fa.s68.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  12  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3809861--3810064	101	2.0	101	99	0	399	32	22	12	32	1.91
3811693--3811727	18	1.9	18	88	0	52	25	8	8	57	1.57
3821030--3822167	344	3.3	340	81	4	1232	30	15	14	40	1.87
3832647--3832701	28	1.9	29	85	3	76	49	1	3	45	1.30
3836747--3836788	18	2.3	19	87	4	59	30	0	0	69	0.89
3837109--3837164	16	3.3	16	75	9	58	35	1	3	58	1.26
3837255--3837370	61	1.9	61	82	3	144	42	0	13	43	1.44
3845255--3845284	14	2.1	14	93	0	51	36	6	6	50	1.55
3851596--3851650	18	3.1	18	70	15	51	18	7	10	63	1.49
3853108--3853187	12	6.8	12	70	18	51	45	0	2	52	1.14
3853244--3853300	29	1.9	30	82	3	71	50	1	0	47	1.11
3864552--3864585	2	17.0	2	100	0	68	50	0	0	50	1.00
3864947--3864986	16	2.4	17	83	4	55	50	2	0	47	1.14
3872200--3872274	38	2.0	37	86	2	105	30	9	29	30	1.88
3874332--3874360	11	2.5	12	94	5	51	10	0	10	79	0.94
3874693--3874733	16	2.4	18	76	19	52	29	0	0	70	0.87
3874717--3874778	29	2.2	28	86	13	85	45	0	0	54	0.99
3874717--3874793	29	2.6	28	76	13	75	44	1	0	54	1.08
3879795--3879829	1	35.0	1	94	0	61	97	0	2	0	0.19
3880271--3880310	2	20.0	2	100	0	80	50	0	50	0	1.00
3882186--3882245	6	10.0	6	85	7	77	80	3	15	1	0.93
3885973--3886006	18	1.9	17	88	5	50	55	0	8	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3886381--3886449	28	2.3	30	78	17	79	37	10	2	49	1.52
3886398--3886453	28	2.0	28	96	0	103	37	14	3	44	1.62
3908352--3908387	3	12.0	3	93	0	63	2	33	0	63	1.08
3909284--3909335	21	2.6	19	79	11	59	65	1	0	32	1.04
3909284--3909335	10	5.1	10	73	13	52	65	1	0	32	1.04
3909471--3909549	21	3.8	21	76	6	79	53	7	8	30	1.60
3909650--3909701	21	2.5	22	81	15	65	48	15	5	30	1.68
3909691--3909783	21	4.3	22	79	6	102	53	4	7	34	1.49
3909692--3909783	43	2.1	43	88	4	132	54	3	7	34	1.45
3909840--3909889	20	2.4	21	80	6	57	46	10	8	36	1.67
3910006--3910054	21	2.4	20	86	6	71	57	8	0	34	1.29
3928214--3928251	19	2.0	19	94	0	67	21	23	7	47	1.77
3935949--3935986	4	9.5	4	88	0	58	31	0	21	47	1.51
3942105--3942689	291	2.0	291	99	0	1152	31	14	19	34	1.92
3961890--3961931	18	2.3	18	87	0	57	11	23	4	59	1.51
3962895--3962939	20	2.2	21	88	7	67	48	0	0	51	1.00
3964611--3964648	2	19.0	2	94	0	67	50	2	0	47	1.15
3971989--3972022	5	6.8	5	93	0	59	20	0	0	79	0.73
3973613--3973662	13	3.9	13	71	12	50	44	0	2	54	1.11
3973610--3973665	24	2.3	24	90	0	85	42	0	1	55	1.10
3976922--3976974	18	2.9	18	77	2	61	39	1	0	58	1.09
3977005--3977042	11	3.5	11	79	13	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3983747--3983794	20	2.2	21	82	14	62	52	0	0	47	1.00
3983757--3983799	20	2.2	20	91	4	70	53	0	0	46	1.00
3983794--3983875	24	3.4	24	78	11	87	64	1	1	32	1.09
3983801--3983857	12	4.8	12	79	10	55	68	0	0	31	0.90
3983810--3983861	19	2.7	19	77	14	61	67	0	0	32	0.91
3989616--3989641	6	4.3	6	100	0	52	69	30	0	0	0.89
3995579--3995628	24	2.0	25	84	3	66	62	0	0	38	0.96
3995948--3996022	12	6.1	13	73	17	54	36	1	0	62	1.04
3996418--3996467	22	2.2	23	86	10	68	62	4	2	32	1.25
3996418--3996474	21	2.6	22	82	15	66	59	3	1	35	1.25
3997010--3997034	13	1.9	13	100	0	50	88	0	12	0	0.53
4007279--4007332	20	2.7	22	83	13	64	42	1	1	53	1.22
4008630--4008679	23	2.1	23	85	10	66	38	0	2	60	1.09
4008662--4008719	18	3.2	18	75	24	59	36	0	5	58	1.20
4008651--4008719	18	3.9	17	70	27	54	36	0	4	59	1.17
4019381--4019412	2	16.5	2	93	6	57	50	0	50	0	1.00
4021229--4021258	2	15.0	2	100	0	60	0	50	0	50	1.00
4022357--4022389	2	16.5	2	100	0	66	51	0	48	0	1.00
4023536--4023589	15	3.9	14	75	20	51	24	1	1	72	1.05
4023536--4023590	26	2.2	24	87	6	74	25	1	1	70	1.06
4027487--4027520	9	3.9	9	84	7	52	88	0	2	8	0.62
4028278--4028316	13	2.9	14	85	11	55	74	0	20	5	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4028267--4028317	15	3.5	14	78	13	50	76	0	17	5	0.98
4029828--4029912	31	2.7	32	77	3	91	36	15	14	34	1.87
4030568--4030656	36	2.4	35	78	9	88	19	13	14	52	1.74
4030594--4030752	36	4.4	35	72	13	108	16	13	11	57	1.64
4030575--4030755	72	2.5	73	76	12	176	18	13	12	55	1.68
4030670--4030778	36	3.0	35	78	7	103	16	14	12	55	1.68
4031111--4031169	23	2.7	22	74	7	57	32	3	3	61	1.29
4032340--4032380	22	1.9	21	85	5	55	24	0	4	70	1.06
4032777--4032844	31	2.2	32	78	7	77	35	4	2	57	1.34
4032786--4032843	31	1.9	31	85	3	82	31	5	3	60	1.35
4032847--4032885	19	2.1	18	85	4	51	53	15	5	25	1.62
4034397--4034465	35	2.0	34	91	2	111	46	2	20	30	1.65
4036543--4036622	42	1.9	41	85	7	108	42	3	7	46	1.50
4045013--4045047	3	11.7	3	100	0	70	31	0	0	68	0.90
4045634--4045663	13	2.3	13	94	0	51	80	3	3	13	0.97
4046452--4046823	197	1.9	196	80	9	445	46	6	9	37	1.62
4047030--4047171	52	2.7	52	95	1	248	54	9	5	30	1.56
4048357--4048409	6	9.0	6	91	2	81	50	0	0	49	1.00
4048400--4048436	16	2.2	18	85	9	51	27	8	2	62	1.37
4048552--4048592	21	1.9	22	90	5	66	26	0	0	73	0.84
4048760--4048806	23	2.0	23	83	0	58	21	2	4	72	1.12
4050480--4050513	17	2.0	17	88	0	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4051174--4051218	19	2.4	19	85	7	56	71	4	4	20	1.21
4051346--4051380	2	18.0	2	88	5	54	45	0	0	54	0.99
4063946--4063995	25	2.0	25	96	0	91	36	14	8	42	1.74
4066420--4066581	84	1.9	84	83	2	209	29	18	20	31	1.97
4074860--4074884	13	1.9	13	100	0	50	40	0	0	60	0.97
4074812--4075143	168	2.0	165	87	6	474	49	5	3	41	1.41
4086618--4086660	22	1.9	23	90	4	70	41	0	0	58	0.98
4088301--4088352	21	2.5	21	96	0	95	34	25	11	28	1.91
4091309--4091382	36	2.0	37	84	7	98	40	12	28	18	1.87
4094871--4094927	28	2.0	29	90	10	91	35	1	0	63	1.05
4096977--4097006	15	2.1	15	93	6	53	20	10	0	70	1.16
4097066--4097384	59	5.3	58	78	11	277	45	4	11	38	1.60
4097194--4097234	21	2.0	20	85	9	55	58	0	4	36	1.20
4098454--4098483	4	7.5	4	92	0	51	43	0	0	56	0.99
4107903--4107939	10	3.7	10	88	0	56	89	0	8	2	0.58
4108911--4109337	41	10.4	41	84	1	514	26	14	19	40	1.89
4108919--4109337	124	3.4	123	86	2	545	26	14	19	39	1.90
4108919--4109365	165	2.7	165	86	1	590	26	14	19	39	1.91
4110336--4110638	59	5.1	59	79	10	307	44	3	10	40	1.57
4110350--4110638	120	2.4	120	83	9	333	44	3	11	40	1.58
4116818--4116875	25	2.3	26	79	8	66	63	0	6	29	1.20
4123113--4123147	2	17.5	2	93	0	61	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4127121--4127222	51	2.0	51	98	0	195	43	22	21	12	1.86
4127124--4127249	51	2.5	51	87	5	139	42	25	20	11	1.86
4130659--4130781	61	2.0	61	96	0	228	52	13	20	13	1.73
4132102--4132186	42	2.0	42	88	0	125	27	12	11	48	1.76
4132711--4132736	3	8.7	3	100	0	52	0	34	0	65	0.93
4133481--4133507	1	27.0	1	100	0	54	0	0	0	100	0.00
4143891--4143926	7	5.0	7	96	3	63	83	16	0	0	0.65
4150569--4150595	2	13.5	2	100	0	54	48	0	51	0	1.00
4155189--4155278	29	2.8	33	73	13	98	38	23	7	30	1.83
4157782--4157821	3	13.3	3	100	0	80	67	0	32	0	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113