genome.fa.s68.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  70  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16189344--16189376	3	11.0	3	100	0	66	33	0	0	66	0.92
16192718--16192773	2	28.0	2	100	0	112	0	50	0	50	1.00
16193799--16193849	15	3.5	14	76	15	50	29	3	7	58	1.44
16193797--16193861	29	2.2	29	86	0	94	32	3	6	58	1.38
16193808--16193884	29	2.7	29	81	4	84	31	6	5	57	1.46
16195522--16195553	2	16.0	2	100	0	64	50	0	0	50	1.00
16197086--16197144	24	2.5	24	83	2	66	32	1	3	62	1.21
16197180--16197267	40	2.2	40	80	8	99	36	3	1	59	1.22
16197243--16197360	18	6.4	18	70	14	71	36	1	2	59	1.21
16197803--16197864	31	2.0	32	83	3	81	59	3	1	35	1.23
16198012--16198069	24	2.5	21	75	24	55	46	3	6	43	1.47
16201419--16201498	28	2.7	30	71	21	71	48	5	0	46	1.24
16209237--16209266	15	2.0	15	93	0	51	43	13	13	30	1.82
16214324--16214363	21	1.9	21	85	10	55	40	0	2	57	1.12
16217949--16218006	30	1.9	30	89	0	89	25	18	6	48	1.73
16218092--16218207	30	3.9	29	75	17	98	37	6	4	50	1.49
16218907--16218951	3	15.3	3	95	4	83	31	0	0	68	0.89
16219610--16219650	3	13.7	3	100	0	82	65	0	0	34	0.93
16220046--16220072	14	1.9	14	100	0	54	55	0	0	44	0.99
16221525--16221580	28	2.1	26	86	6	76	46	0	0	53	1.00
16228248--16228290	18	2.3	18	84	4	59	44	6	4	44	1.52
16233317--16233393	21	3.7	21	91	6	129	37	9	18	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16233317--16233654	42	8.4	42	69	19	213	36	7	19	35	1.81
16233347--16233628	56	4.8	56	77	10	253	36	7	19	35	1.81
16233409--16233449	21	2.0	21	100	0	82	36	9	19	34	1.85
16233489--16233570	21	3.9	21	88	6	130	41	4	14	39	1.67
16233402--16233643	121	2.0	121	90	1	387	38	7	18	35	1.80
16233594--16233649	21	2.8	20	91	2	85	37	10	16	35	1.83
16233317--16233636	177	1.8	177	86	3	464	37	8	19	35	1.81
16233924--16233989	16	4.2	16	78	5	64	28	18	16	36	1.93
16234159--16234295	43	3.2	42	83	4	150	24	10	17	46	1.80
16234286--16234390	44	2.4	44	82	6	140	27	12	16	43	1.83
16234302--16234388	44	1.9	46	90	4	142	27	12	17	42	1.85
16235696--16235728	16	2.0	17	88	5	50	45	3	3	48	1.33
16235966--16235991	13	2.0	13	100	0	52	15	0	0	84	0.62
16239842--16239892	2	26.5	2	76	7	52	43	3	3	49	1.39
16239861--16239896	17	2.1	17	100	0	72	41	5	5	47	1.50
16240094--16240125	2	16.0	2	93	0	55	50	3	0	46	1.17
16242190--16242261	37	1.9	37	94	0	126	48	2	0	48	1.16
16243034--16243088	28	2.0	27	86	6	76	47	5	9	38	1.58
16248301--16248344	15	2.9	15	84	15	63	13	6	2	77	1.07
16252025--16252376	187	1.9	187	85	2	492	34	10	13	42	1.78
16252303--16252713	215	1.9	212	88	5	614	32	10	13	43	1.78
16254036--16254115	28	2.8	28	81	7	81	28	6	20	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16254156--16254203	25	2.0	24	87	4	69	18	10	25	45	1.81
16254181--16254297	37	3.2	36	80	6	137	27	11	21	40	1.87
16254250--16254357	49	2.2	49	81	6	130	24	8	27	39	1.84
16257356--16257432	35	2.2	35	85	0	100	35	18	9	37	1.82
16257515--16257751	126	1.9	126	80	1	278	36	15	10	37	1.83
16263308--16263370	27	2.3	27	83	5	83	33	36	4	25	1.77
16263872--16267010	35	89.0	34	71	11	885	52	12	15	18	1.74
16264153--16264504	139	2.5	137	79	7	354	52	14	15	17	1.74
16265237--16265283	22	2.1	22	88	0	67	61	10	10	17	1.55
16265138--16265389	128	2.0	128	81	4	294	54	13	15	17	1.71
16265322--16265390	34	2.0	34	82	5	84	59	10	11	18	1.60
16265331--16265480	69	2.2	69	83	6	178	58	10	14	18	1.63
16265452--16265585	71	1.9	70	84	1	178	55	10	14	19	1.67
16269419--16269453	16	2.2	16	89	0	52	45	11	11	31	1.76
16273526--16402846	35	3683.7	36	69	12	20616	51	12	16	19	1.75
16274663--16274749	36	2.5	35	83	5	95	58	14	10	16	1.62
16274659--16274914	106	2.4	106	79	8	265	53	12	14	20	1.72
16273526--16501316	105	2166.5	105	68	13	39406	51	12	16	20	1.76
16274599--16501316	70	3230.7	70	68	13	37658	51	12	16	20	1.76
16275634--16275694	20	3.3	20	73	21	78	54	11	13	21	1.70
16276082--16276178	36	2.7	35	73	6	88	57	15	11	15	1.65
16276114--16276388	104	2.6	107	79	7	278	52	13	14	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16276733--16276797	29	2.3	29	84	7	80	58	10	7	23	1.57
16277051--16277240	104	1.8	104	79	2	220	49	13	16	20	1.79
16277564--16277980	106	4.0	105	77	6	317	53	13	13	19	1.72
16277965--16278257	107	2.8	105	78	4	275	53	12	15	19	1.72
16278221--16278283	29	2.2	29	88	5	92	46	15	19	19	1.85
16278572--16278628	20	3.1	20	64	23	52	52	12	14	21	1.73
16278714--16291612	141	92.2	142	69	13	773	51	12	16	19	1.75
16279630--16279684	18	3.1	18	72	20	53	49	12	16	21	1.79
16280521--16280839	172	1.9	172	83	4	419	52	12	14	20	1.73
16281615--16281924	104	2.9	105	74	9	254	54	13	14	17	1.71
16281966--16282053	33	2.7	32	75	7	86	50	13	17	19	1.79
16282096--16282161	33	1.9	35	84	6	91	50	10	19	19	1.77
16282541--16282812	104	2.6	104	81	5	282	51	12	15	20	1.75
16282995--16283619	243	2.6	243	76	9	601	53	11	15	20	1.72
16285001--16285118	36	3.4	33	82	9	105	52	11	16	19	1.74
16285234--16285297	29	2.2	28	88	2	92	54	15	14	15	1.71
16286705--16286755	15	2.9	18	68	26	54	60	11	11	15	1.58
16288232--16288291	19	3.3	19	68	13	63	55	8	15	21	1.66
16290228--16290279	25	2.1	25	92	0	86	46	5	23	25	1.74
16290863--16290915	16	3.1	17	76	15	63	62	5	7	24	1.44
16290863--16290915	17	3.1	18	75	24	60	62	5	7	24	1.44
16291002--16291153	67	2.2	69	82	5	184	52	12	17	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16291013--16291209	103	1.9	102	84	7	265	49	12	18	19	1.78
16291972--16292022	25	2.0	25	88	0	75	58	11	9	19	1.60
16295194--16295436	100	2.4	99	80	6	256	52	13	12	21	1.73
16295418--16295474	19	3.2	18	71	19	57	59	10	10	19	1.59
16296122--16296205	37	2.4	36	84	9	102	58	11	13	16	1.63
16296211--16296750	139	3.9	136	74	13	383	50	13	15	19	1.77
16297515--16297583	36	1.9	36	90	0	111	53	13	15	17	1.73
16297646--16297730	42	2.0	42	84	4	109	56	8	14	21	1.64
16298602--16298716	55	2.1	55	85	3	151	52	12	13	21	1.73
16299241--16299680	240	1.8	241	81	4	548	51	11	17	19	1.76
16299887--16299971	34	2.4	35	82	7	93	56	10	15	17	1.66
16300416--16300513	36	2.8	35	78	9	101	57	15	10	17	1.65
16300303--16300778	247	1.9	245	81	6	559	52	11	15	20	1.73
16304058--16304128	37	1.9	37	85	0	97	60	12	12	14	1.59
16304839--16304874	17	2.0	19	89	10	58	66	8	8	16	1.42
16313793--16313856	30	2.1	30	85	2	83	54	14	15	15	1.71
16315327--16315462	30	4.2	30	71	19	112	50	11	20	17	1.77
16316170--16316367	67	2.9	67	79	4	184	48	17	15	18	1.81
16316589--16316638	24	2.1	24	96	0	91	52	18	18	12	1.75
16316552--16316670	59	2.0	59	91	3	195	53	15	15	15	1.73
16316289--16316824	235	2.3	233	79	7	541	52	15	15	17	1.75
16319810--16320048	123	1.9	122	83	5	309	53	12	14	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16320229--16320295	29	2.2	29	84	5	80	47	11	19	20	1.81
16320142--16320284	66	2.1	68	83	5	173	51	11	18	18	1.76
16320247--16320309	29	2.2	29	85	5	83	50	7	17	23	1.72
16324610--16324660	19	2.9	18	72	16	52	60	11	7	19	1.55
16331928--16332254	171	1.9	168	84	6	428	51	12	16	19	1.76
16333258--16333321	19	3.5	20	65	18	57	56	7	14	21	1.63
16333504--16333554	16	2.9	18	68	11	52	43	3	25	27	1.72
16332771--16334391	211	7.7	210	74	9	648	51	11	16	20	1.75
16334328--16334555	124	1.8	124	80	7	275	50	12	16	20	1.77
16339246--16339298	18	3.0	18	75	13	65	56	15	11	16	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113