genome.fa.s68.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  63  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15090956--15090997	14	2.9	15	86	13	54	38	0	4	57	1.20
15090893--15091039	71	2.1	70	94	1	258	34	7	5	53	1.52
15090961--15091330	58	6.3	58	79	9	378	35	9	5	48	1.60
15090893--15091173	132	2.2	129	75	8	275	34	7	5	51	1.55
15090962--15091362	177	2.2	177	81	10	469	35	8	6	49	1.59
15090979--15091330	119	3.0	115	82	5	438	35	9	5	48	1.61
15091371--15091403	6	5.8	6	92	7	52	84	0	0	15	0.61
15091436--15091470	3	11.7	3	93	0	52	68	5	0	25	1.11
15093701--15093813	60	1.9	59	87	1	163	30	13	8	46	1.73
15093800--15093833	15	2.3	15	89	0	50	26	0	2	70	1.01
15093813--15093946	56	2.4	56	83	5	173	32	11	5	50	1.60
15093757--15093897	74	1.9	73	82	5	178	34	9	6	50	1.60
15093700--15094053	128	2.7	130	81	8	405	33	11	6	47	1.67
15094152--15094194	7	6.6	7	84	10	56	69	0	0	30	0.88
15094480--15094522	15	2.9	15	78	0	59	0	46	0	53	1.00
15095002--15095090	3	30.3	3	72	18	55	71	2	1	24	1.04
15095001--15095087	7	12.4	7	75	14	74	72	2	1	24	1.03
15095000--15095077	27	2.9	25	76	12	75	71	2	1	24	1.06
15095000--15095124	11	10.7	11	72	15	67	72	2	1	24	1.06
15096714--15096766	14	3.6	14	75	24	56	83	3	11	1	0.87
15096714--15096773	16	3.9	15	79	16	70	80	5	13	1	0.96
15097777--15098036	120	2.2	119	78	5	256	23	25	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15098406--15098520	5	22.8	5	74	11	76	39	1	6	53	1.36
15098407--15098529	8	13.9	9	72	17	66	39	2	5	52	1.38
15098407--15098477	18	3.8	18	78	17	74	43	0	7	49	1.29
15098487--15098535	3	17.0	3	79	8	57	32	6	0	61	1.21
15098482--15098535	28	1.9	28	84	0	72	31	5	1	61	1.30
15099449--15099511	19	3.3	19	88	8	92	17	6	1	74	1.10
15099459--15099532	39	1.9	38	86	8	105	17	5	4	72	1.19
15099541--15099578	19	2.1	19	85	9	53	36	0	5	57	1.21
15103105--15103141	18	2.1	18	89	0	56	56	13	0	29	1.37
15103138--15103177	20	2.1	19	90	4	62	70	0	0	30	0.88
15103302--15103337	18	1.9	19	94	5	65	75	0	2	22	0.94
15103298--15103344	18	2.6	17	80	12	58	70	0	2	27	0.99
15108745--15108773	15	1.9	15	100	0	58	20	0	10	68	1.18
15108752--15108797	20	2.3	20	85	3	67	26	0	4	69	1.07
15109094--15109118	4	6.2	4	100	0	50	24	0	0	76	0.80
15109950--15109991	14	2.9	14	80	16	50	35	0	7	57	1.26
15111822--15111867	21	2.1	22	96	4	85	34	10	13	41	1.79
15112272--15112603	41	8.1	41	77	7	228	26	12	18	43	1.85
15112530--15112617	45	2.0	45	81	0	104	25	10	18	46	1.80
15113500--15113553	21	2.6	21	76	2	65	18	0	1	79	0.82
15113856--15113911	27	2.1	27	83	3	69	39	12	8	39	1.75
15117986--15118020	10	3.4	10	84	7	52	65	0	2	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15120772--15121088	111	2.7	113	80	14	335	47	6	10	35	1.63
15120875--15121101	66	3.7	64	80	11	235	49	7	9	33	1.63
15122442--15122860	59	7.1	57	82	9	418	47	7	11	33	1.67
15122466--15122863	118	3.4	118	84	5	511	46	7	12	33	1.69
15122607--15122642	19	1.9	19	88	5	56	41	11	5	41	1.64
15122466--15122863	177	2.2	176	88	5	590	46	7	12	33	1.69
15123865--15123906	22	1.9	22	85	9	59	26	0	7	66	1.17
15133400--15133579	57	3.1	55	75	14	159	56	11	15	17	1.67
15133451--15133578	62	2.1	61	85	4	168	58	10	14	16	1.62
15134653--15135098	85	5.2	85	80	4	366	22	17	13	46	1.82
15134725--15135104	171	2.2	170	81	4	424	23	17	13	46	1.83
15136145--15136191	3	16.0	3	91	4	78	0	2	31	65	1.04
15136262--15136504	118	2.0	120	88	6	359	46	5	11	36	1.64
15136262--15136504	58	4.1	59	88	7	339	46	5	11	36	1.64
15137845--15138111	58	4.5	59	81	8	301	47	7	10	34	1.66
15137847--15138108	121	2.2	118	83	8	327	48	6	10	33	1.65
15148557--15148717	51	3.1	51	81	7	180	53	10	16	19	1.71
15148564--15148872	58	5.4	56	77	9	256	55	11	14	19	1.69
15149885--15150403	86	6.1	86	80	1	479	20	19	14	44	1.86
15151354--15151418	6	10.3	7	94	5	65	30	1	0	67	1.00
15151363--15151433	3	23.7	3	94	0	124	29	0	2	67	1.05
15151417--15151459	3	14.3	3	85	0	50	9	0	23	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15151528--15151715	60	3.1	60	87	6	247	45	6	12	35	1.68
15154804--15154833	15	2.0	15	100	0	60	33	20	20	26	1.97
15160731--15160880	75	2.0	76	94	3	270	43	8	9	38	1.68
15178964--15179041	26	3.0	26	100	0	156	46	15	7	30	1.74
15183351--15183446	10	9.5	10	73	15	56	58	7	0	34	1.26
15183362--15183397	12	2.9	13	88	12	58	63	5	0	30	1.17
15183353--15183389	12	3.2	12	92	7	60	62	8	0	29	1.24
15183522--15183556	17	2.0	18	88	5	54	57	0	2	40	1.14
15183591--15183637	20	2.3	20	81	0	58	57	2	6	34	1.36
15183835--15183889	27	2.0	27	89	3	83	43	3	1	50	1.30
15183989--15184046	22	2.8	20	82	12	64	34	5	3	56	1.38
15183989--15184063	10	7.4	10	72	14	55	33	4	4	58	1.35
15184040--15184114	34	2.2	34	80	19	86	37	2	4	56	1.32
15184279--15184321	19	2.3	19	88	4	61	27	2	4	65	1.25
15184308--15184445	10	13.5	10	71	11	75	34	2	4	59	1.29
15184344--15184393	20	2.5	20	93	3	84	42	0	4	54	1.19
15186364--15186427	19	3.4	19	74	23	64	46	0	0	53	1.00
15186364--15186420	8	6.5	8	81	18	69	47	0	0	52	1.00
15186364--15186420	26	2.1	27	90	3	89	47	0	0	52	1.00
15189543--15189730	65	2.9	65	93	0	313	34	18	18	28	1.94
15190476--15190505	15	1.9	16	93	6	53	63	3	0	33	1.11
15191513--15191568	26	2.2	26	90	0	85	39	25	8	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15191613--15192451	424	2.0	424	84	4	1093	43	13	15	28	1.84
15192676--15193023	86	4.1	86	78	5	276	37	13	16	32	1.88
15192809--15192867	17	3.4	18	72	6	50	33	11	20	33	1.89
15192956--15193020	17	3.9	17	74	9	53	47	13	12	26	1.78
15193108--15193332	55	4.1	54	78	6	184	45	16	18	19	1.85
15193248--15193514	121	2.2	121	80	1	302	41	14	22	21	1.89
15194277--15194342	30	2.2	30	78	7	73	6	19	3	71	1.21
15198988--15199023	18	1.9	18	88	5	54	58	2	5	33	1.36
15202121--15206144	863	4.7	860	78	6	3657	34	19	9	36	1.84
15206252--15206316	28	2.3	27	80	12	69	36	1	1	60	1.16
15206511--15206553	20	2.2	20	92	8	72	48	0	0	51	1.00
15206546--15206591	24	2.0	23	87	8	67	69	0	0	30	0.89
15207505--15207572	20	3.3	20	83	6	75	55	2	1	39	1.24
15207528--15207576	20	2.5	20	93	0	80	63	2	0	34	1.06
15207667--15207860	21	9.5	21	79	6	184	43	3	4	48	1.39
15207667--15207860	41	4.8	41	78	4	142	43	3	4	48	1.39
15207689--15207860	62	2.8	62	79	3	206	43	2	4	49	1.36
15207664--15207848	82	2.3	79	80	9	203	44	3	4	48	1.38
15207718--15207853	20	6.7	19	78	9	119	45	1	3	49	1.28
15208056--15208101	10	4.5	10	77	22	51	60	2	0	36	1.09
15208027--15208101	27	2.6	27	81	14	80	58	2	0	38	1.12
15208070--15208111	20	2.1	20	86	8	59	69	4	0	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15208174--15208236	21	3.0	21	81	2	74	41	0	4	53	1.22
15208420--15208548	59	2.2	59	81	0	150	29	21	3	45	1.67
15208730--15208786	29	2.0	28	83	10	71	54	1	7	36	1.38
15209575--15209615	13	3.2	12	86	6	55	39	0	14	46	1.45
15210805--15210836	17	1.9	17	93	6	57	21	12	6	59	1.55
15216858--15216898	21	2.0	21	90	0	64	43	12	4	39	1.63
15218306--15218346	19	2.2	19	91	8	66	2	12	0	85	0.70
15218315--15218346	10	3.3	10	91	8	57	0	15	0	84	0.63
15225418--15225470	26	2.0	26	92	0	88	49	1	15	33	1.55
15225582--15225635	24	2.2	24	80	0	63	9	7	3	79	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113