genome.fa.s68.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  31  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9828105--9828144	19	2.1	19	85	0	53	70	0	2	27	1.01
9828438--9828571	41	3.3	41	88	5	184	48	16	12	22	1.80
9828985--9829174	91	2.1	91	89	1	290	35	12	10	42	1.76
9828985--9829176	46	4.2	46	88	2	280	34	12	10	42	1.77
9831334--9831384	23	2.4	21	81	15	61	49	21	5	23	1.71
9834579--9834629	25	2.1	24	81	3	57	37	15	7	39	1.77
9836331--9836380	26	2.0	26	92	4	84	72	6	4	18	1.22
9836411--9836457	26	1.9	23	87	12	67	76	4	0	19	0.95
9836413--9836473	17	3.4	17	72	24	54	77	3	0	19	0.91
9839134--9839303	89	1.9	89	97	0	322	26	20	20	32	1.97
9843445--9843484	20	2.0	20	95	0	71	17	15	12	55	1.70
9844195--9844236	21	2.0	21	86	9	59	28	0	7	64	1.20
9844197--9844242	24	2.0	23	91	4	74	30	2	6	60	1.34
9844197--9844252	24	2.4	24	85	11	73	32	1	5	60	1.29
9844188--9844252	24	3.0	21	77	16	69	30	3	4	61	1.31
9845603--9845654	25	2.1	25	85	7	70	46	0	1	51	1.12
9845699--9845751	5	10.4	5	76	11	54	58	0	0	41	0.98
9845699--9845785	6	14.7	6	74	16	67	56	0	0	43	0.99
9845699--9845776	30	2.6	31	82	12	99	56	0	0	43	0.99
9845734--9845781	18	2.7	17	90	9	78	54	0	0	45	0.99
9845699--9845785	30	2.9	29	80	14	97	56	0	0	43	0.99
9847732--9847760	12	2.4	12	100	0	58	13	10	48	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851564--9851613	2	25.5	2	79	4	57	42	6	0	52	1.26
9853083--9853137	28	2.0	28	96	0	101	34	0	7	58	1.26
9855478--9855584	53	2.0	53	90	0	169	47	4	7	40	1.52
9855648--9855714	22	3.1	22	78	2	73	50	5	8	34	1.58
9855664--9855750	22	4.0	22	73	10	61	43	4	10	41	1.59
9855778--9855850	22	3.3	22	76	14	78	50	1	8	39	1.41
9856128--9856207	22	3.6	22	81	0	97	46	3	10	40	1.55
9856205--9856288	22	3.8	22	75	6	71	45	7	5	41	1.56
9856199--9856410	44	4.9	44	74	8	134	47	8	6	37	1.61
9856231--9856379	22	6.8	22	71	13	85	50	10	4	34	1.56
9856720--9856983	67	4.0	65	71	14	164	47	5	7	38	1.56
9856671--9856998	22	14.9	22	69	11	163	49	6	7	36	1.57
9856671--9856999	43	7.5	43	71	11	175	48	6	7	37	1.57
9857053--9857106	22	2.5	22	87	6	74	57	3	7	31	1.44
9857066--9857152	22	4.0	22	77	8	79	55	5	4	34	1.44
9857058--9857150	11	8.5	11	66	17	59	55	4	4	35	1.39
9857079--9857172	44	2.1	44	82	3	109	52	6	6	35	1.53
9857195--9857290	22	4.4	22	77	5	79	45	6	7	40	1.57
9857341--9857380	21	1.9	21	90	10	64	52	0	10	37	1.35
9857791--9857816	2	13.0	2	100	0	52	50	0	0	50	1.00
9862009--9862050	15	3.0	14	76	10	50	40	0	0	59	0.97
9862308--9862347	20	2.2	19	86	13	57	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9863213--9863262	24	2.1	24	84	0	64	44	2	4	50	1.32
9863932--9863983	26	2.0	26	88	0	77	15	17	30	36	1.91
9867082--9867117	14	2.6	14	86	0	54	66	8	0	25	1.19
9867601--9867639	2	19.5	2	100	0	78	0	51	0	48	1.00
9878060--9878147	40	2.1	40	85	10	115	38	3	2	55	1.29
9878130--9878160	12	2.5	12	94	5	53	32	3	0	64	1.09
9881274--9881302	3	9.7	3	100	0	58	68	0	0	31	0.89
9881469--9881499	16	1.9	16	93	0	53	25	0	0	74	0.82
9882199--9882244	24	1.9	24	91	8	76	21	8	0	69	1.15
9885512--9885600	41	2.2	41	82	8	101	22	4	25	47	1.70
9889028--9889109	41	2.0	41	95	0	146	29	26	12	31	1.92
9889407--9889482	40	1.9	40	94	0	134	42	2	35	19	1.66
9893283--9893349	23	2.8	23	73	17	57	46	1	0	52	1.09
9899466--9899542	30	2.5	31	83	8	104	45	0	6	48	1.28
9913488--9913533	24	1.9	24	81	0	56	69	4	10	15	1.32
9913658--9913708	26	2.0	25	81	11	59	56	0	7	35	1.28
9914123--9914175	26	2.0	27	81	3	63	35	1	0	62	1.06
9914447--9914489	16	2.7	16	77	0	50	37	0	0	62	0.95
9914457--9914495	20	2.0	20	84	0	51	38	0	0	61	0.96
9914470--9914546	29	2.6	29	71	20	70	46	2	0	50	1.15
9917445--9917471	8	3.4	8	100	0	54	85	0	0	14	0.61
9920646--9920703	30	1.9	30	92	0	98	32	12	31	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9929396--9929476	37	2.2	38	91	4	130	40	1	7	50	1.38
9929498--9930043	72	7.7	72	75	9	303	38	9	6	44	1.64
9929585--9929975	143	2.8	142	76	12	340	39	8	6	44	1.63
9929801--9929928	66	1.9	66	82	3	159	44	10	3	40	1.58
9930633--9930674	7	6.1	7	80	5	50	83	9	2	4	0.88
9933812--9933841	3	10.0	3	100	0	60	66	0	0	33	0.92
9942949--9943006	29	2.0	29	93	0	98	27	13	20	37	1.91
9948655--9948741	43	2.0	43	95	0	156	42	9	18	29	1.81
9952933--9952963	16	2.0	16	93	6	55	45	0	0	54	0.99
9954389--9954465	29	2.6	29	81	4	82	55	1	5	37	1.30
9954408--9954467	29	2.0	30	87	9	88	53	1	1	43	1.20
9967897--9968016	58	2.0	60	81	12	142	54	0	0	45	1.06
9967940--9968037	30	3.2	32	73	18	93	52	1	0	46	1.07
9968157--9968213	16	3.4	16	77	15	53	57	0	0	42	0.98
9976308--9976344	19	2.0	20	89	10	60	62	0	0	37	0.96
9979880--9980042	80	2.0	80	92	0	272	23	19	23	33	1.97
9980114--9980230	60	2.0	60	96	0	216	25	17	14	42	1.87
9991283--9991315	16	2.1	16	100	0	66	69	0	0	30	0.88
9992094--9992141	24	2.1	23	84	7	62	58	4	0	37	1.18
9992660--9993025	187	2.0	186	89	1	563	26	22	14	37	1.92
9995164--9995198	2	18.0	2	94	5	63	51	0	0	48	1.00
10004629--10004724	42	2.3	40	78	19	99	69	6	4	19	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10004659--10004744	35	2.4	35	74	18	86	73	5	3	17	1.18
10004675--10004744	18	3.9	18	76	10	54	72	5	4	17	1.20
10004982--10005056	37	2.0	37	94	0	132	32	16	10	41	1.82
10008517--10008551	3	11.7	3	100	0	70	68	0	0	31	0.90
10008575--10008711	30	4.6	29	75	17	86	43	7	0	48	1.36
10008575--10008689	30	3.9	28	77	16	90	42	6	0	50	1.29
10008605--10008710	30	3.6	29	78	10	99	45	6	0	47	1.35
10009620--10009674	21	2.6	21	88	2	83	45	9	5	40	1.59
10013015--10013070	25	2.2	25	87	0	85	32	5	8	53	1.55
10013015--10013078	25	2.6	25	85	2	76	31	4	9	54	1.53
10015117--10015172	2	28.5	2	80	3	51	53	8	0	37	1.32
10017622--10017669	24	2.0	25	87	4	71	20	14	2	62	1.42
10018066--10018116	4	12.8	4	84	15	70	0	27	0	72	0.85
10018421--10018492	36	2.0	36	91	0	117	36	11	34	18	1.86
10019668--10019849	36	5.1	36	66	10	104	53	15	14	16	1.74
10020318--10020626	33	9.5	32	72	14	188	33	14	18	33	1.91
10020318--10020630	66	4.8	63	77	12	260	33	14	18	33	1.91
10020417--10020821	65	6.3	65	74	9	305	34	13	17	34	1.89
10020318--10020754	194	2.2	193	85	5	560	34	13	17	34	1.89
10020349--10020821	33	14.7	32	69	12	218	34	13	17	33	1.90
10020825--10020916	33	2.7	34	84	5	123	30	13	17	39	1.87
10020905--10021008	32	3.3	31	67	10	75	30	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10020960--10021060	52	1.9	53	85	2	141	26	23	19	29	1.98
10021026--10021096	32	2.2	32	82	2	90	32	16	16	33	1.92
10023084--10023129	12	3.7	13	80	16	53	0	13	2	84	0.71
10023084--10023129	13	3.8	12	85	11	58	0	13	2	84	0.71
10023084--10023129	23	2.0	23	86	4	65	0	13	2	84	0.71
10025000--10025099	22	4.5	22	70	17	64	23	2	26	49	1.61
10025559--10025614	21	2.6	21	77	5	58	33	3	0	62	1.12
10026047--10026103	22	2.5	22	78	16	53	29	12	1	56	1.46
10026350--10026427	37	2.1	36	83	2	93	21	11	6	60	1.53
10026460--10026517	21	2.8	21	75	17	57	1	29	0	68	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113