genome.fa.s68.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  106  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20764734--20764788	21	2.6	21	97	0	101	25	30	25	18	1.98
20769876--20769904	4	7.5	4	92	7	51	24	0	0	75	0.80
20777625--20777655	5	6.0	5	92	7	53	80	19	0	0	0.71
20777625--20777661	11	3.5	11	92	3	58	81	16	2	0	0.81
20779398--20779597	105	1.9	107	88	2	305	36	14	13	36	1.86
20779487--20779755	127	2.1	127	82	5	321	36	18	12	33	1.88
20779841--20779892	22	2.3	23	78	15	56	36	32	11	19	1.87
20780048--20780107	7	8.7	7	94	3	104	73	15	11	0	1.10
20780062--20780135	7	10.1	7	79	13	51	77	8	14	0	0.99
20780090--20780142	17	3.1	17	86	8	63	77	3	18	0	0.92
20783250--20783320	22	3.2	22	78	11	81	36	5	15	42	1.71
20783248--20783365	23	5.2	23	76	9	98	37	3	14	44	1.62
20783248--20783764	45	11.5	45	69	12	256	37	7	14	41	1.73
20783259--20783341	22	3.7	23	80	6	91	36	4	15	43	1.68
20783428--20783499	23	3.2	23	67	25	62	36	2	16	44	1.63
20783228--20783580	180	2.0	181	81	3	417	38	9	14	38	1.77
20783240--20783764	91	5.8	90	71	11	310	37	7	14	40	1.74
20783603--20783746	44	3.2	45	78	10	134	34	5	13	46	1.66
20784016--20784059	17	2.6	17	85	0	61	34	6	9	50	1.61
20784102--20784264	17	9.6	17	71	0	110	35	13	15	35	1.87
20784087--20784281	34	5.7	34	75	0	138	37	13	13	34	1.85
20784741--20784775	6	5.8	6	93	0	52	22	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20784740--20784775	18	2.0	18	94	0	63	25	0	8	66	1.19
20785849--20785901	21	2.5	22	93	3	90	50	0	0	49	1.00
20785937--20785963	13	2.1	13	100	0	54	70	0	0	29	0.88
20786045--20786069	11	2.3	11	100	0	50	16	68	16	0	1.22
20786279--20786563	101	2.9	96	74	13	247	43	8	6	41	1.61
20788284--20788351	30	2.2	30	82	7	75	26	1	5	66	1.23
20791560--20791602	2	21.5	2	90	0	68	48	0	2	48	1.14
20796422--20796534	30	3.8	30	72	11	97	49	5	8	36	1.57
20797018--20797070	27	1.9	28	84	3	72	47	0	5	47	1.26
20797779--20797828	24	2.1	24	96	0	91	44	30	10	16	1.80
20801072--20801135	29	2.1	30	85	5	85	54	4	7	32	1.50
20810444--20812651	747	3.0	745	92	2	3576	39	14	12	33	1.84
20813628--20813679	25	2.1	25	96	0	95	57	9	7	25	1.57
20819320--20819564	119	2.0	120	99	0	483	40	3	4	51	1.40
20819524--20819660	29	4.7	30	76	11	115	54	0	8	37	1.30
20820068--20820136	12	5.8	11	73	21	59	43	1	0	55	1.08
20820072--20820130	28	2.2	26	79	8	66	44	1	0	54	1.10
20820068--20820141	37	2.0	36	82	7	87	44	1	0	54	1.08
20820298--20820354	19	3.1	18	73	17	55	78	1	12	7	1.01
20820315--20820344	15	1.9	16	93	6	53	73	3	13	10	1.21
20820305--20820346	16	2.6	16	80	3	57	78	2	11	7	1.04
20820639--20820668	9	3.2	9	95	4	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20820641--20820670	10	3.1	10	95	4	53	63	0	0	36	0.95
20821717--20821749	17	2.0	17	88	5	50	51	0	0	48	1.00
20822244--20822282	7	5.6	7	96	0	60	74	5	0	20	1.01
20822242--20822296	21	2.6	21	80	5	58	76	3	3	16	1.07
20822229--20822299	37	1.9	37	82	0	88	73	5	4	16	1.19
20823351--20823397	20	2.3	20	85	7	60	63	6	6	23	1.41
20824987--20825017	12	2.5	12	94	5	53	77	16	0	6	0.97
20835578--20835862	43	6.1	48	77	11	306	28	12	22	36	1.90
20835578--20835850	92	2.9	91	84	5	350	28	12	23	35	1.91
20835819--20835896	34	2.3	35	84	4	97	23	12	24	39	1.89
20835852--20836036	49	3.8	48	73	5	158	28	15	18	36	1.92
20836125--20836156	16	2.0	16	93	0	55	84	6	9	0	0.78
20836264--20836288	3	8.3	3	100	0	50	68	0	0	32	0.90
20836276--20836324	22	2.2	23	81	3	55	69	6	2	22	1.21
20837301--20837330	15	2.0	15	93	0	51	36	0	0	63	0.95
20837401--20837446	20	2.2	21	81	14	60	63	4	6	26	1.38
20837610--20837652	3	14.3	3	100	0	86	67	0	0	32	0.91
20840985--20841015	16	1.9	16	93	0	53	38	12	16	32	1.86
20841282--20841400	26	4.6	26	75	17	88	29	0	4	65	1.17
20842448--20843213	61	12.7	60	86	5	1014	46	6	12	34	1.68
20842448--20843213	121	6.4	121	86	5	1027	46	6	12	34	1.68
20842448--20843213	182	4.2	180	91	3	1078	46	6	12	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20851913--20851974	20	3.3	19	84	10	74	75	3	11	9	1.14
20852749--20852834	29	2.9	30	84	10	106	51	0	6	41	1.29
20853524--20853587	24	2.7	23	77	11	76	76	0	18	4	0.95
20853529--20853577	21	2.4	20	83	10	55	75	0	18	6	1.00
20857746--20857786	20	2.0	20	100	0	82	24	4	31	39	1.76
20860452--20860481	8	3.8	8	95	0	51	43	0	0	56	0.99
20860470--20860522	22	2.4	22	87	6	72	45	1	1	50	1.23
20860990--20861408	207	2.0	207	95	0	748	34	15	14	35	1.88
20861954--20862023	25	2.8	24	76	8	68	41	31	7	20	1.79
20861963--20862023	25	2.4	25	83	0	77	42	32	6	18	1.76
20862241--20862288	23	2.0	25	84	8	64	60	8	6	25	1.49
20862596--20863727	186	6.1	185	82	4	1159	41	10	14	33	1.80
20863330--20863354	13	1.9	13	100	0	50	56	0	12	32	1.36
20868207--20878492	747	13.8	747	89	1	14381	33	12	15	38	1.86
20881153--20881286	34	3.9	34	81	1	144	36	14	11	38	1.81
20881156--20881286	68	1.9	68	88	0	199	36	12	11	38	1.80
20881169--20881300	34	3.9	34	82	0	120	36	15	11	37	1.83
20885202--20885246	22	2.1	21	83	4	54	15	2	11	71	1.24
20888466--20888513	24	2.0	24	96	4	89	43	8	4	43	1.53
20891324--20891369	24	1.9	24	86	8	67	58	2	0	39	1.10
20895969--20896011	21	2.0	21	90	0	68	37	0	2	60	1.10
20897172--20897217	18	2.5	19	75	17	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20902480--20902504	2	12.5	2	100	0	50	52	0	0	48	1.00
20908255--20908292	16	2.4	16	82	8	51	34	0	0	65	0.93
20908247--20908292	24	1.9	24	95	0	83	34	0	0	65	0.93
20908248--20908289	12	3.5	12	78	12	50	35	0	0	64	0.94
20920649--20920684	17	2.1	18	89	5	56	55	11	0	33	1.35
20920858--20920905	21	2.4	21	86	6	64	50	2	0	47	1.12
20921397--20921456	24	2.4	26	81	8	72	48	13	10	28	1.74
20921415--20921467	26	2.0	26	82	7	63	43	16	13	26	1.85
20921524--20921574	6	8.5	6	86	0	57	66	19	0	13	1.24
20921519--20921574	15	3.9	15	79	13	64	66	19	0	14	1.26
20921521--20921561	3	13.7	3	84	0	55	68	24	0	7	1.15
20921521--20921574	18	3.0	18	88	0	81	66	20	0	12	1.24
20922805--20922850	19	2.3	20	92	3	76	26	21	28	23	1.99
20922894--20922952	31	1.9	31	86	6	84	33	20	18	27	1.96
20923385--20923552	16	10.8	16	66	21	54	64	6	1	26	1.28
20923414--20923557	37	3.7	37	72	14	112	62	7	0	29	1.28
20923385--20923583	79	2.5	78	75	12	176	66	6	3	23	1.29
20923407--20923585	77	2.3	76	76	15	168	65	6	3	24	1.32
20936158--20936314	72	2.2	73	80	5	185	21	19	12	46	1.82
20936374--20936457	36	2.3	37	83	4	98	22	17	8	51	1.72
20936945--20937108	34	4.8	33	81	8	152	18	24	12	45	1.83
20936624--20937004	135	2.8	134	82	2	458	21	19	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20937442--20937479	12	3.2	12	88	0	58	50	0	5	44	1.24
20938513--20938561	18	2.8	18	84	3	64	22	2	2	73	1.04
20938666--20938705	21	1.9	21	94	0	71	67	5	0	27	1.11
20938977--20939122	16	9.7	15	70	11	95	48	31	0	19	1.54
20938978--20939122	30	4.9	31	76	10	94	48	31	0	19	1.54
20939075--20939122	14	3.3	14	75	11	51	54	29	0	16	1.43
20939045--20939145	30	3.5	28	72	12	80	47	29	0	22	1.52
20955431--20955486	5	11.0	5	79	11	51	75	5	5	14	1.16
20955437--20955517	23	3.4	23	77	6	65	76	3	7	12	1.12
20956805--20957031	43	5.3	43	82	2	267	45	14	14	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113