genome.fa.s68.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  49  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12996553--12996776	117	1.9	118	83	6	292	36	25	12	26	1.91
12996673--12996812	46	3.0	45	82	8	165	37	23	12	26	1.90
13001102--13001140	14	2.7	14	80	4	51	69	0	17	12	1.19
13007885--13007918	5	6.8	5	93	0	59	2	0	17	79	0.86
13009815--13009861	15	3.3	15	74	14	55	2	0	21	76	0.89
13009814--13009874	28	2.2	28	82	5	79	8	0	21	70	1.13
13010318--13010358	3	13.7	3	100	0	82	68	0	0	31	0.90
13010871--13010928	26	2.1	28	81	15	68	29	13	8	48	1.73
13012406--13012479	24	3.0	24	79	13	78	43	1	4	51	1.29
13012467--13012495	8	3.6	8	100	0	58	62	0	0	37	0.96
13016051--13016297	133	1.9	133	86	1	352	36	21	6	35	1.79
13018493--13018610	44	2.8	43	79	11	136	43	5	8	42	1.59
13021447--13021486	14	2.9	14	92	0	62	77	0	7	15	0.98
13022094--13022150	3	19.0	3	100	0	114	33	33	0	33	1.58
13022991--13023031	19	2.2	19	95	0	73	24	7	29	39	1.82
13023758--13023801	19	2.3	19	88	0	61	0	18	2	79	0.83
13023759--13023815	23	2.5	24	78	21	61	0	15	5	78	0.91
13025634--13025660	13	2.1	13	100	0	54	51	18	14	14	1.76
13026921--13026998	22	3.5	22	77	6	61	33	8	23	34	1.86
13026965--13027016	22	2.4	22	86	0	68	26	13	25	34	1.93
13027054--13027145	22	4.2	21	75	9	78	25	14	25	35	1.93
13027054--13027156	22	4.7	22	75	3	57	26	14	23	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13027170--13027268	40	2.5	40	85	9	132	41	10	8	40	1.68
13027170--13027357	41	4.6	40	76	7	132	39	10	10	39	1.74
13027240--13027397	41	3.9	41	77	8	144	40	9	12	37	1.75
13029174--13029206	16	1.9	18	88	11	52	54	12	9	24	1.66
13032480--13032550	38	1.9	38	83	8	94	30	7	25	36	1.83
13032498--13032574	38	2.0	38	82	9	95	29	7	24	37	1.84
13033582--13033763	25	7.2	25	83	3	213	51	6	10	32	1.61
13033582--13033763	50	3.6	50	85	3	240	51	6	10	32	1.61
13034497--13034529	17	1.9	17	93	0	57	51	15	0	33	1.43
13035076--13035184	7	16.3	7	69	12	50	19	0	29	50	1.54
13035082--13035157	13	5.8	13	80	9	66	19	0	26	53	1.45
13035072--13035129	26	2.2	25	77	16	64	20	0	31	48	1.50
13035095--13035157	20	3.2	20	73	13	58	19	0	25	55	1.43
13038078--13038175	40	2.4	39	83	6	115	29	14	16	39	1.88
13038436--13038478	13	3.2	13	80	9	50	18	0	6	74	1.04
13039535--13039574	20	2.0	21	95	5	73	10	0	15	75	1.05
13039541--13039585	20	2.2	20	88	0	63	8	2	13	75	1.13
13039557--13039603	24	2.0	24	82	0	58	12	6	8	72	1.27
13041999--13042224	113	2.0	113	93	0	389	43	14	14	26	1.84
13045465--13045517	18	3.1	17	84	13	65	71	3	3	20	1.17
13045470--13045534	33	2.0	33	82	11	80	73	3	6	16	1.16
13047152--13047193	18	2.3	18	95	0	75	14	0	11	73	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13048398--13048506	57	1.9	56	87	7	157	46	12	8	32	1.72
13054447--13054486	10	3.8	10	81	12	53	20	2	0	77	0.88
13054447--13054494	22	2.2	22	88	7	71	18	2	0	79	0.84
13054599--13054665	24	2.6	27	76	21	72	77	1	10	10	1.06
13056084--13056123	9	4.4	9	83	0	53	35	5	10	50	1.58
13056084--13056123	18	2.2	18	90	0	62	35	5	10	50	1.58
13056770--13056838	31	2.3	30	82	12	79	53	1	2	42	1.24
13056982--13057041	29	2.1	29	87	0	84	30	16	6	46	1.73
13064213--13064248	18	2.0	18	88	0	54	5	19	8	66	1.38
13066892--13066996	37	2.9	36	89	1	156	32	11	9	46	1.72
13067082--13067163	43	1.9	43	94	0	146	34	21	10	32	1.89
13067151--13067261	60	1.9	59	87	7	165	34	7	12	45	1.70
13068476--13068517	13	2.9	14	82	13	50	71	11	2	14	1.24
13070032--13070058	14	1.9	14	100	0	54	22	0	0	77	0.76
13075250--13075300	13	4.0	13	97	2	95	23	23	15	37	1.93
13075812--13075886	38	2.0	38	86	5	107	30	10	14	44	1.79
13075893--13076015	38	3.2	38	86	4	160	24	11	22	41	1.87
13076110--13076245	43	3.2	43	81	8	170	30	12	17	38	1.87
13077123--13077180	20	3.0	19	85	5	73	34	10	10	44	1.73
13077202--13077574	21	17.4	20	70	16	144	33	3	9	53	1.51
13077233--13077287	24	2.4	24	82	8	62	32	3	10	52	1.54
13077271--13077313	17	2.5	17	84	0	59	30	2	9	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13077288--13077594	24	13.8	24	74	17	245	32	2	10	54	1.49
13077233--13077577	65	5.3	64	86	7	403	33	3	9	53	1.50
13077532--13077621	18	4.7	18	70	20	65	28	2	12	56	1.47
13077677--13077781	35	3.1	35	86	2	142	29	7	14	48	1.71
13077749--13077806	22	2.6	22	91	5	91	29	5	12	53	1.59
13077771--13077942	35	5.0	36	68	16	116	31	5	12	51	1.61
13077714--13077854	56	2.5	56	85	7	180	29	6	12	51	1.65
13077805--13077855	22	2.2	24	89	6	79	33	3	9	52	1.53
13077781--13077982	101	2.0	100	96	0	368	30	5	12	50	1.63
13081783--13081825	17	2.6	17	75	17	54	79	0	6	13	0.93
13082720--13082771	23	2.3	23	100	0	104	34	19	7	38	1.80
13083082--13083106	13	1.9	13	100	0	50	32	24	4	40	1.73
13083494--13083643	43	3.5	43	77	8	153	27	14	20	38	1.91
13083867--13083892	13	2.0	13	100	0	52	23	0	0	76	0.78
13084552--13084600	20	2.6	19	83	6	64	34	4	6	55	1.44
13084634--13084724	17	5.7	17	68	29	67	31	4	10	52	1.56
13084645--13084749	21	5.1	21	74	3	106	35	4	8	51	1.54
13084644--13084971	24	13.2	24	70	22	166	32	4	10	52	1.56
13084634--13084959	62	5.2	62	76	13	285	31	5	10	52	1.58
13084644--13084971	45	7.1	45	72	18	196	32	4	10	52	1.56
13084733--13084840	55	1.9	57	87	7	159	31	5	12	50	1.62
13084671--13084889	121	1.8	119	83	9	293	32	5	10	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13084790--13084972	71	2.7	66	80	13	180	32	4	10	53	1.55
13084855--13085018	48	3.4	48	81	11	131	32	4	11	51	1.57
13085064--13085120	17	3.4	16	72	18	53	26	5	17	50	1.67
13085015--13085125	34	3.1	35	85	5	152	28	6	15	49	1.69
13085055--13085110	12	4.8	12	72	16	55	26	7	16	50	1.70
13094670--13094736	22	3.1	23	76	20	72	46	1	0	52	1.09
13094692--13094743	22	2.3	24	81	12	67	51	0	0	48	1.00
13094764--13094809	24	2.0	23	87	12	67	67	0	0	32	0.91
13095752--13095778	14	1.9	14	100	0	54	51	0	3	44	1.19
13096248--13096325	24	3.3	24	69	18	65	51	2	5	41	1.38
13096300--13096342	17	2.7	16	89	10	70	51	0	2	46	1.13
13096479--13096510	16	2.0	16	100	0	64	56	0	0	43	0.99
13099953--13100263	86	3.7	84	79	6	326	40	5	9	44	1.60
13100315--13100358	20	2.2	20	87	0	61	52	6	4	36	1.49
13101090--13101135	24	1.9	24	100	0	92	21	13	4	60	1.49
13104794--13104820	14	1.9	14	100	0	54	14	3	14	66	1.38
13104854--13104911	26	2.4	23	76	17	64	15	12	10	62	1.55
13104859--13104909	26	2.0	26	92	0	84	15	13	11	58	1.63
13107930--13107962	16	2.1	16	94	0	57	24	3	6	66	1.28
13110513--13110568	22	2.5	23	85	2	69	83	1	10	3	0.83
13110513--13110558	23	2.0	23	86	0	65	84	2	8	4	0.83
13110853--13110914	20	3.0	21	79	11	65	77	4	11	6	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13110833--13110914	21	3.8	22	73	16	64	74	4	12	8	1.20
13111968--13112064	44	2.2	45	84	1	124	43	7	10	39	1.66
13111984--13112179	92	2.2	91	83	4	236	37	4	13	44	1.64
13112138--13112202	23	3.0	22	82	8	62	33	3	10	52	1.52
13111988--13112188	46	4.4	45	76	6	156	36	3	13	45	1.63
13112147--13112207	22	2.7	23	82	12	72	32	3	11	52	1.54
13112040--13112207	46	3.7	45	71	15	123	33	4	14	48	1.63
13112178--13112269	43	2.2	43	88	5	134	34	7	11	45	1.70
13112336--13112519	53	3.5	53	75	4	165	33	15	10	40	1.81
13112375--13112432	18	3.3	18	80	4	73	27	12	13	46	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113