genome.fa.s68.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  87  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18119506--18119741	117	2.0	117	92	0	391	38	20	9	31	1.85
18122988--18123023	18	2.0	18	89	10	56	25	0	2	72	0.98
18123161--18123202	17	2.5	17	88	3	59	50	0	0	50	1.00
18123218--18123262	19	2.2	22	84	11	60	53	4	2	40	1.33
18124096--18124152	24	2.3	24	77	19	64	59	0	1	38	1.08
18124289--18124329	17	2.3	18	84	16	59	29	0	0	70	0.87
18124289--18124329	18	2.4	17	88	12	57	29	0	0	70	0.87
18125776--18125814	6	6.5	6	96	0	60	61	0	33	5	1.18
18129520--18129566	24	2.0	24	84	16	62	42	2	0	55	1.12
18137147--18137185	14	2.8	14	84	0	60	20	5	0	74	1.01
18137283--18137319	17	2.2	18	85	9	51	35	0	8	56	1.29
18137488--18137527	18	2.2	18	86	8	55	70	0	15	15	1.18
18138407--18138469	5	13.0	5	83	6	76	41	15	1	41	1.57
18138395--18138449	28	2.0	28	88	0	83	45	10	1	41	1.50
18140127--18140156	11	2.6	11	94	5	51	3	6	0	90	0.56
18144641--18144679	14	2.8	14	76	0	51	20	7	0	71	1.10
18145790--18145893	3	36.3	3	88	7	65	69	10	0	19	1.23
18145869--18145929	9	6.9	9	72	10	54	54	1	9	34	1.44
18146650--18146819	61	2.7	62	82	8	204	30	15	14	40	1.86
18146616--18146839	63	3.6	61	76	13	181	33	15	13	38	1.86
18147576--18147717	63	2.3	61	80	8	153	35	11	14	38	1.84
18146901--18148293	559	2.5	553	82	7	1672	34	12	13	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18148133--18148534	171	2.3	171	77	8	397	35	11	14	38	1.83
18152437--18152463	14	1.9	14	100	0	54	44	0	7	48	1.31
18152661--18153465	64	13.0	62	71	14	261	34	14	14	36	1.87
18152703--18152994	126	2.3	128	82	6	362	33	17	14	35	1.90
18152933--18153045	52	2.2	52	90	0	172	32	10	16	39	1.83
18153008--18153362	62	5.7	62	74	9	220	35	12	13	38	1.83
18153130--18153459	126	2.6	124	80	4	374	36	12	15	35	1.85
18153130--18153467	127	2.7	124	79	4	372	36	12	15	35	1.85
18153336--18153601	136	2.0	137	80	8	312	34	13	16	35	1.88
18153907--18153933	14	1.9	14	100	0	54	48	7	0	44	1.31
18155815--18155886	29	2.4	30	79	4	83	40	23	5	30	1.77
18158697--18158803	20	5.3	20	73	12	85	6	2	40	50	1.43
18159832--18159861	14	2.1	14	93	0	51	0	10	0	90	0.47
18159832--18159861	15	2.1	14	93	6	51	0	10	0	90	0.47
18161529--18161572	14	3.1	15	80	9	56	54	2	0	43	1.12
18161658--18161730	25	3.1	24	77	12	73	68	1	6	23	1.21
18161684--18161738	28	2.1	24	83	12	65	67	3	9	20	1.34
18162635--18162692	24	2.4	24	85	5	82	24	1	3	70	1.12
18162656--18162698	16	2.8	15	79	6	50	30	0	4	65	1.13
18163699--18163813	16	7.2	16	73	18	64	67	0	17	14	1.23
18163713--18163811	9	10.2	9	70	19	58	69	0	16	14	1.19
18163720--18163796	21	3.7	22	67	22	67	68	0	16	14	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18163704--18163812	40	2.8	39	83	8	143	68	0	16	14	1.21
18163704--18163803	8	12.8	8	71	17	68	70	0	17	13	1.18
18165026--18165097	25	3.1	24	78	9	78	45	4	8	41	1.53
18165100--18165243	21	6.9	21	82	0	164	37	6	19	36	1.77
18165254--18165294	20	2.0	20	85	0	55	34	14	19	31	1.92
18165208--18165415	107	1.9	108	86	0	292	37	13	16	32	1.88
18165623--18165700	18	4.5	17	67	17	54	32	14	15	38	1.87
18166008--18166059	4	12.8	4	76	11	52	23	3	1	71	1.13
18167943--18168046	49	2.2	47	84	8	138	57	7	10	24	1.58
18168891--18168968	38	2.1	38	100	0	156	34	25	16	23	1.95
18172061--18172087	2	13.5	2	100	0	54	51	0	0	48	1.00
18172188--18172337	75	2.0	75	98	0	291	40	11	20	28	1.87
18172379--18172440	2	31.0	2	83	0	61	48	9	1	40	1.46
18172573--18172603	12	2.6	12	94	0	53	32	29	12	25	1.93
18172589--18172661	26	2.8	26	93	2	121	36	24	17	20	1.94
18177958--18177986	2	15.0	2	92	7	51	51	0	0	48	1.00
18179402--18179445	24	1.9	22	86	9	61	56	6	2	34	1.38
18181884--18182297	214	1.9	216	85	4	570	30	16	15	37	1.91
18187390--18187437	2	24.0	2	91	0	78	52	0	45	2	1.12
18189418--18189497	31	2.6	31	85	0	106	35	17	6	41	1.75
18191785--18191825	20	2.0	20	86	9	57	21	4	19	53	1.63
18194008--18194058	25	2.1	25	82	7	61	45	1	3	49	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18195558--18195848	160	1.9	157	81	8	360	42	12	8	35	1.74
18195631--18196292	158	4.2	160	74	10	440	44	12	8	33	1.73
18195616--18197733	161	13.2	157	74	10	692	43	14	7	34	1.75
18195443--18197733	322	7.2	320	79	5	1751	43	14	7	34	1.75
18195996--18197744	482	3.6	479	81	4	1831	42	15	7	33	1.75
18197635--18197863	122	1.9	122	84	1	307	43	13	7	35	1.72
18197757--18198709	322	3.0	321	83	2	1173	42	15	7	34	1.75
18197757--18198696	161	5.9	161	80	3	914	42	15	7	34	1.75
18199203--18199240	20	1.9	20	89	10	60	42	5	2	50	1.39
18202717--18202747	12	2.6	12	100	0	62	48	9	16	25	1.76
18204796--18204974	94	1.9	92	87	2	259	54	10	7	27	1.61
18206560--18206756	106	1.9	107	90	1	315	32	15	10	41	1.80
18208135--18208162	13	2.2	13	100	0	56	42	14	7	35	1.73
18208528--18208594	28	2.4	28	100	0	134	56	2	0	40	1.14
18208755--18208852	33	2.9	33	81	4	106	37	19	6	36	1.77
18210683--18210759	33	2.4	32	80	8	93	45	3	1	49	1.28
18216535--18216684	7	22.6	7	70	17	88	19	0	35	44	1.56
18216537--18216611	13	5.8	14	79	17	65	21	0	34	44	1.53
18216564--18216609	12	3.8	12	88	8	58	15	0	36	47	1.45
18218107--18218511	143	2.8	144	76	7	335	43	13	11	31	1.79
18218941--18219258	41	7.8	41	73	3	219	41	11	17	29	1.84
18218973--18219258	123	2.3	123	78	0	320	41	11	17	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18220011--18220099	5	16.8	5	75	22	51	73	1	7	17	1.14
18220018--18220072	18	3.0	18	75	17	51	70	0	7	21	1.11
18220041--18220098	23	2.5	23	77	0	71	72	1	8	17	1.18
18220303--18220406	51	2.0	51	85	3	138	45	20	11	23	1.83
18220933--18221036	3	34.3	3	74	9	86	58	0	5	34	1.28
18221564--18221836	113	2.4	113	82	1	314	36	13	25	24	1.93
18232532--18232613	42	1.9	43	87	2	121	42	14	14	28	1.85
18234348--18234382	3	11.7	3	93	0	61	37	0	28	34	1.58
18234345--18234383	9	4.3	9	93	0	60	41	0	25	33	1.56
18234387--18234430	15	2.9	15	79	0	52	56	4	9	29	1.50
18234643--18234897	41	6.2	41	78	5	248	36	12	20	30	1.90
18234643--18234912	122	2.2	123	83	4	332	35	12	20	31	1.90
18237552--18237576	13	1.9	13	100	0	50	48	8	28	16	1.74
18239853--18239907	19	3.1	18	77	20	62	5	12	3	78	1.06
18249841--18249866	10	2.6	10	100	0	52	73	0	0	26	0.84
18255354--18255397	6	7.3	6	92	0	61	22	0	45	31	1.53
18255740--18255826	18	5.1	18	62	20	51	35	26	4	33	1.77
18257710--18257749	21	1.9	21	85	10	55	27	2	20	50	1.61
18263983--18264043	31	2.0	32	90	6	99	47	4	9	37	1.58
18263984--18264058	32	2.4	31	84	4	89	50	5	9	34	1.57
18264047--18264099	23	2.4	23	84	6	65	43	0	15	41	1.46
18265327--18265356	14	2.1	14	100	0	60	43	13	0	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18265563--18265621	28	2.1	28	81	9	66	8	15	6	69	1.34
18276892--18276926	12	3.0	12	91	4	54	45	0	0	54	0.99
18279706--18279889	98	1.9	98	93	0	314	24	15	16	42	1.87
18279873--18279928	20	3.0	20	71	10	55	16	23	12	48	1.80
18282525--18282748	70	3.2	70	80	5	245	37	11	6	44	1.67
18282765--18283001	119	2.0	119	79	4	255	34	10	6	48	1.63
18282905--18283273	72	5.1	71	76	11	279	37	10	6	44	1.65
18282988--18283273	145	2.0	143	82	7	346	38	10	6	43	1.66
18283000--18283314	145	2.2	143	78	8	318	39	10	6	43	1.65
18283914--18283958	20	2.3	19	85	7	63	33	13	4	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113