genome.fa.s68.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  44  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12038155--12038198	12	3.8	12	85	8	65	36	0	2	61	1.09
12045758--12045791	16	2.2	15	89	5	50	55	5	0	38	1.24
12046751--12046778	14	2.0	14	100	0	56	35	21	0	42	1.53
12050164--12050205	11	3.8	11	75	12	50	23	0	23	52	1.47
12050231--12050361	52	2.5	52	81	4	149	46	8	17	27	1.77
12050492--12050518	13	2.1	13	100	0	54	14	0	37	48	1.45
12058612--12058645	16	2.1	16	88	0	50	17	0	14	67	1.23
12060883--12061322	57	7.7	57	82	8	437	36	12	6	44	1.69
12060884--12061315	171	2.5	171	85	3	539	37	12	6	43	1.69
12061731--12061768	17	2.2	18	90	4	60	2	26	0	71	1.00
12064080--12064134	23	2.5	22	80	11	58	83	1	7	7	0.87
12067066--12067148	41	2.0	42	81	6	98	32	6	8	53	1.56
12068457--12068486	15	2.0	15	93	0	51	40	6	3	50	1.45
12087254--12087396	62	2.3	60	74	11	148	48	4	4	41	1.46
12089766--12089812	24	2.0	24	86	0	67	78	6	4	10	1.06
12090146--12090188	17	2.6	17	85	3	52	58	2	0	39	1.11
12090419--12090454	7	4.9	7	87	12	54	83	2	0	13	0.76
12098701--12098725	11	2.3	11	100	0	50	0	8	0	92	0.40
12099851--12099887	18	2.1	18	89	0	56	27	18	21	32	1.97
12103494--12103536	22	2.0	22	90	0	68	65	4	4	25	1.32
12104125--12104202	24	3.2	24	72	3	75	30	1	6	61	1.29
12104755--12104810	21	2.7	21	86	5	69	28	32	7	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12105201--12105260	6	11.0	5	87	5	57	58	3	5	33	1.36
12105426--12105498	26	2.8	26	82	0	92	28	23	24	23	1.99
12105502--12105558	19	3.0	19	87	5	80	42	31	10	15	1.81
12108675--12108710	16	2.2	16	90	9	56	83	5	11	0	0.80
12108716--12108767	13	3.8	13	74	18	52	67	1	1	28	1.12
12108733--12108780	15	3.0	16	87	6	71	58	4	6	31	1.42
12108891--12108978	45	2.0	45	81	4	106	28	27	23	20	1.99
12108932--12108996	26	2.5	25	90	5	94	27	27	24	20	1.99
12113709--12113743	5	7.0	5	90	0	52	80	17	2	0	0.84
12114182--12114526	129	2.7	127	81	6	396	40	7	6	45	1.56
12114512--12114551	15	2.7	15	88	0	53	50	10	0	40	1.36
12114827--12114880	25	2.3	23	80	6	63	62	1	3	31	1.23
12120699--12120724	13	2.0	13	100	0	52	30	23	15	30	1.95
12121893--12121924	7	4.4	7	96	4	55	71	0	0	28	0.86
12123023--12123069	24	2.0	24	91	0	76	48	0	6	44	1.28
12123030--12123090	32	1.9	32	93	3	106	52	0	4	42	1.23
12124231--12124306	28	2.7	28	78	8	82	36	3	5	53	1.42
12124236--12124315	24	3.2	24	76	16	81	37	5	5	52	1.45
12130759--12130805	24	2.0	24	91	0	76	48	0	6	44	1.28
12130766--12130826	32	1.9	32	93	3	106	52	0	4	42	1.23
12131038--12131111	23	3.2	22	78	14	69	33	1	4	60	1.24
12131053--12131117	8	7.6	8	71	19	51	36	1	1	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12131957--12132030	24	2.9	24	76	11	76	35	5	6	52	1.51
12135730--12136140	196	2.1	198	79	5	433	42	4	7	45	1.51
12147347--12147427	27	2.9	28	83	3	110	35	20	7	35	1.81
12147881--12147944	27	2.4	27	76	7	69	39	17	6	37	1.75
12148951--12148990	16	2.5	16	91	0	62	40	22	2	35	1.68
12154339--12154369	16	1.9	16	93	0	53	48	22	12	16	1.80
12155476--12155516	20	2.1	19	86	4	55	51	0	7	41	1.30
12160871--12160924	18	3.1	18	86	2	65	59	0	5	35	1.21
12161960--12162044	34	2.5	34	84	0	107	17	9	14	58	1.61
12161960--12162045	17	5.0	18	76	9	81	18	9	13	58	1.62
12162058--12162109	20	2.8	18	71	23	54	11	9	17	61	1.55
12161959--12162304	107	3.1	107	79	8	376	21	12	14	51	1.76
12167646--12167772	61	2.1	60	82	5	148	36	4	11	47	1.61
12167375--12167782	194	2.1	194	81	5	486	41	4	7	46	1.52
12181164--12181194	16	1.9	16	93	0	53	41	25	6	25	1.79
12184320--12184400	27	2.9	28	81	3	101	37	20	6	35	1.78
12184855--12184918	27	2.4	27	76	7	69	39	17	6	37	1.75
12185925--12185964	16	2.5	16	91	0	62	40	22	2	35	1.68
12197861--12197914	18	3.1	18	86	2	65	59	0	5	35	1.21
12198174--12198559	88	4.3	90	71	13	249	46	12	7	32	1.70
12198957--12199019	17	3.7	17	75	12	58	15	9	12	61	1.55
12198944--12199032	18	5.0	19	75	14	82	17	8	13	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12199056--12199098	21	2.0	21	83	16	54	11	6	13	67	1.41
12198928--12199294	110	3.3	109	79	9	368	21	12	14	50	1.76
12206555--12206618	27	2.4	27	76	7	69	39	17	6	37	1.75
12207625--12207664	16	2.5	16	91	0	62	40	22	2	35	1.68
12219527--12219581	18	3.1	17	85	12	67	52	0	7	40	1.29
12219776--12219815	20	2.0	20	85	0	53	52	0	7	40	1.30
12219829--12220172	92	3.8	90	74	14	237	46	12	8	32	1.72
12219845--12220065	90	2.5	91	80	12	235	46	11	6	34	1.67
12219825--12220218	89	4.4	87	73	11	267	45	13	8	32	1.73
12220627--12220689	17	3.7	17	75	12	58	15	9	12	61	1.55
12220627--12220693	18	3.9	17	80	7	73	16	10	13	59	1.60
12220645--12220702	18	3.2	19	83	11	77	17	8	15	58	1.61
12220627--12220701	36	2.1	34	85	4	96	16	9	14	60	1.59
12220782--12220816	18	2.0	18	88	5	54	25	14	8	51	1.70
12220632--12220852	114	1.9	118	83	7	290	21	11	12	54	1.69
12225759--12225798	16	2.5	16	87	0	53	40	20	5	35	1.74
12231150--12231180	16	1.9	16	93	0	53	48	22	12	16	1.80
12237667--12237725	17	3.4	17	77	15	57	55	0	6	37	1.26
12237667--12237726	18	3.4	17	84	6	66	55	0	6	38	1.27
12237675--12237726	17	3.0	17	81	15	70	57	0	5	36	1.23
12237968--12238360	90	4.4	87	73	12	269	46	13	7	32	1.70
12238764--12238840	19	4.4	17	75	18	61	16	7	11	63	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12238765--12238853	18	5.0	19	75	14	82	17	7	13	60	1.56
12238765--12239116	112	3.1	110	80	9	356	21	11	14	51	1.75
12242238--12242288	24	2.1	24	85	7	68	39	15	9	35	1.81
12242242--12242411	84	2.0	85	91	1	279	40	15	5	38	1.71
12242361--12242544	94	2.0	94	100	0	368	40	10	6	41	1.66
12246230--12246285	20	2.9	20	78	5	53	58	7	3	30	1.42
12247233--12247263	15	2.1	14	94	5	53	25	0	3	70	1.02
12247314--12247374	31	1.9	32	87	9	90	52	1	6	39	1.37
12247908--12247967	25	2.4	25	75	10	61	46	3	3	46	1.35
12248534--12248600	28	2.4	28	82	9	84	31	4	5	58	1.42
12248593--12248647	23	2.4	23	81	6	58	40	1	1	56	1.21
12249592--12249654	12	5.3	12	74	14	60	65	0	0	34	0.93
12249588--12249648	16	3.5	17	76	24	65	65	0	0	34	0.93
12249591--12249656	20	3.6	20	78	17	72	66	0	0	33	0.92
12249596--12249662	35	2.1	34	81	15	81	64	0	0	35	0.94
12251998--12252082	30	3.0	29	85	11	115	41	3	1	54	1.25
12252697--12252872	61	2.9	61	79	9	182	43	2	5	48	1.39
12252660--12253077	196	2.1	195	81	4	486	42	3	6	47	1.44
12258423--12258465	18	2.4	18	84	7	52	27	4	2	65	1.25
12259817--12259884	33	2.1	33	86	10	95	17	1	7	73	1.13
12259810--12259867	7	8.6	7	78	14	52	17	0	8	74	1.06
12259817--12259884	16	4.2	16	81	9	66	17	1	7	73	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12263719--12263779	21	2.7	24	78	17	76	40	4	9	44	1.59
12263794--12263945	47	3.3	45	75	10	112	38	5	18	37	1.75
12264091--12264183	35	2.6	35	79	5	89	40	13	5	39	1.68
12264091--12264183	17	5.3	17	85	5	96	40	13	5	39	1.68
12264140--12264261	18	6.8	18	74	7	79	35	8	13	42	1.75
12264122--12264234	36	3.2	35	83	5	129	36	10	11	41	1.76
12264386--12264433	17	2.8	17	77	0	51	41	10	14	33	1.80
12265040--12265094	24	2.3	23	84	12	67	70	12	5	10	1.31
12266259--12266403	57	2.6	56	80	5	157	51	4	8	35	1.53
12266358--12266400	15	2.8	16	85	7	54	53	9	0	37	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113