genome.fa.s68.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  40  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11500714--11500752	7	5.4	7	90	6	51	20	0	0	79	0.73
11502182--11502241	27	2.3	26	80	8	68	48	0	16	35	1.47
11503130--11503169	2	20.0	2	94	0	71	52	0	0	47	1.00
11503221--11503280	29	2.0	30	90	3	95	51	8	5	35	1.54
11504428--11504464	17	2.2	17	90	0	56	24	13	8	54	1.66
11504548--11504591	19	2.4	18	78	10	54	59	11	0	29	1.32
11504786--11504831	22	2.0	23	87	4	67	56	2	2	39	1.24
11510710--11510781	15	4.8	15	73	19	60	55	0	0	44	0.99
11510733--11510772	13	2.9	14	81	7	55	57	0	0	42	0.98
11510733--11510786	27	2.0	27	85	7	74	55	0	0	44	0.99
11513540--11513634	46	2.1	46	93	0	163	21	10	23	45	1.82
11513717--11513767	25	2.0	25	100	0	102	23	3	23	49	1.67
11517081--11517141	22	2.6	22	80	14	61	45	1	6	45	1.39
11517301--11517364	25	2.6	26	74	23	66	53	0	0	46	1.00
11517991--11518042	26	2.0	26	88	3	77	51	0	0	48	1.00
11518009--11518043	18	2.0	17	88	5	52	54	0	0	45	0.99
11520015--11520048	17	2.1	17	94	5	61	38	8	5	47	1.59
11520465--11520544	30	2.7	30	78	7	83	48	1	12	37	1.49
11523488--11523530	18	2.4	17	81	11	50	60	0	0	39	0.97
11523847--11523877	7	4.4	7	95	0	53	22	0	0	77	0.77
11525312--11525371	27	2.3	26	80	8	68	48	0	16	35	1.47
11526342--11526400	29	2.0	29	86	0	82	52	6	5	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11527646--11527689	19	2.4	18	78	10	54	59	11	0	29	1.32
11528844--11528928	31	2.8	30	78	3	107	34	3	4	57	1.37
11529228--11529268	20	2.0	22	85	9	59	36	2	2	58	1.24
11536162--11536254	46	2.0	46	93	0	159	21	10	22	45	1.83
11542124--11542158	2	17.5	2	100	0	70	51	0	0	48	1.00
11542627--11542730	52	2.0	52	90	0	163	32	19	18	29	1.95
11552155--11552199	22	2.0	22	95	0	81	26	15	22	35	1.94
11554164--11554197	15	2.2	16	89	5	52	52	0	0	47	1.00
11554278--11554357	28	2.8	28	77	14	83	45	1	2	51	1.22
11554294--11554340	18	2.5	19	86	6	69	44	0	2	53	1.12
11554277--11554357	31	2.8	28	83	12	94	44	1	2	51	1.22
11554308--11554383	23	3.3	23	75	12	77	43	2	0	53	1.14
11554331--11554383	20	2.8	18	86	10	79	43	3	0	52	1.19
11555375--11555431	21	2.9	19	80	14	62	33	0	3	63	1.12
11557581--11557884	150	2.0	150	97	0	572	36	15	18	28	1.92
11575359--11575446	37	2.4	37	75	7	88	47	0	0	52	1.00
11575372--11575423	13	4.2	13	80	9	54	48	0	0	51	1.00
11575360--11575488	42	3.0	42	78	16	115	50	0	0	48	1.06
11579381--11579426	23	2.0	23	100	0	92	26	17	17	39	1.91
11582186--11582218	15	2.2	15	94	0	57	36	0	3	60	1.12
11582273--11582316	22	2.0	22	86	8	63	56	2	2	38	1.24
11582364--11582400	14	2.6	14	91	4	56	35	0	5	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11589722--11589754	15	2.2	15	94	0	57	36	0	3	60	1.12
11589885--11589921	14	2.6	14	95	4	65	37	0	5	56	1.22
11595222--11595284	27	2.3	27	94	0	108	34	9	33	22	1.86
11596826--11596852	2	13.5	2	100	0	54	51	0	0	48	1.00
11599782--11599815	17	2.0	17	100	0	68	17	23	11	47	1.81
11599802--11599871	34	2.1	34	88	0	104	22	12	22	41	1.88
11600170--11600243	33	2.2	32	90	4	112	33	6	10	48	1.64
11600354--11600387	15	2.3	15	90	5	52	67	2	0	29	1.05
11603588--11603642	23	2.3	24	76	14	60	45	5	1	47	1.36
11603978--11604012	14	2.6	14	86	4	54	31	0	22	45	1.53
11612005--11612041	10	3.9	10	82	13	51	0	10	2	86	0.67
11612005--11612041	18	2.1	18	94	0	65	0	10	2	86	0.67
11613210--11613275	32	2.0	35	85	8	93	46	1	1	50	1.20
11615258--11615362	54	1.9	55	88	1	158	35	17	8	39	1.80
11616782--11616853	34	2.2	32	82	9	83	59	0	0	40	0.97
11620406--11620444	3	13.0	3	100	0	78	33	0	0	66	0.92
11622311--11622776	255	1.8	254	82	5	593	31	10	25	32	1.90
11623436--11623596	81	2.0	83	91	4	265	44	9	14	31	1.78
11624761--11625867	370	3.0	369	80	7	1348	38	15	19	27	1.91
11629247--11629289	23	1.9	23	90	4	70	30	11	13	44	1.80
11629656--11629690	18	1.9	18	94	0	61	22	11	25	40	1.88
11633132--11633175	22	2.0	22	95	0	79	31	11	13	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11636188--11636218	15	2.0	16	93	6	55	45	6	0	48	1.28
11645186--11645497	168	1.9	164	81	7	375	45	6	4	43	1.50
11648864--11648927	27	2.4	27	86	0	101	45	21	6	26	1.76
11648878--11648920	14	3.1	14	73	6	52	46	18	4	30	1.69
11652392--11652437	18	2.6	18	82	0	56	30	21	4	43	1.72
11652450--11652474	3	8.3	3	100	0	50	32	36	0	32	1.58
11654725--11654768	21	2.1	21	100	0	88	34	4	22	38	1.75
11656971--11657013	18	2.3	19	84	4	52	65	13	0	20	1.27
11657079--11657278	59	3.4	58	82	5	206	56	20	2	20	1.54
11657157--11657272	33	3.8	32	68	21	86	56	22	3	18	1.57
11657123--11657284	59	2.8	58	85	8	211	57	20	2	19	1.52
11660056--11660092	15	2.4	16	91	8	60	72	0	0	27	0.84
11660077--11660356	154	1.8	154	98	0	542	52	8	14	24	1.69
11660930--11661703	44	17.9	44	69	14	226	42	14	10	32	1.80
11660968--11661126	43	3.7	44	79	5	164	47	10	9	32	1.70
11660930--11661144	87	2.5	87	76	6	220	43	13	10	32	1.78
11662927--11662983	18	3.4	18	72	22	61	26	0	3	70	1.03
11662953--11662989	8	4.2	9	83	16	51	29	0	0	70	0.88
11663107--11663161	25	2.1	27	86	6	78	29	7	12	50	1.67
11663219--11663245	14	1.9	14	100	0	54	55	0	7	37	1.28
11678649--11679224	193	3.0	192	84	1	704	33	14	23	28	1.94
11683027--11683059	16	2.0	17	88	5	50	54	0	3	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11683022--11683099	41	1.9	39	87	5	111	50	1	1	47	1.17
11683068--11683125	25	2.3	25	80	11	66	50	0	0	50	1.00
11683041--11683104	19	3.2	19	74	14	58	50	1	1	46	1.20
11684949--11685057	35	3.4	31	79	12	121	27	7	11	54	1.62
11687426--11687466	21	2.0	21	90	0	64	26	9	24	39	1.86
11690913--11691431	287	1.8	287	82	5	672	34	9	12	44	1.74
11691173--11692233	162	6.6	160	78	9	862	33	8	14	43	1.75
11691173--11692227	315	3.3	316	79	8	993	33	8	14	43	1.75
11693888--11693938	3	17.0	3	95	0	93	66	1	0	31	1.03
11694856--11694885	14	2.1	15	93	6	53	40	0	0	60	0.97
11698002--11698029	2	14.0	2	100	0	56	50	0	0	50	1.00
11699799--11699823	11	2.3	11	100	0	50	32	20	20	28	1.97
11704961--11705011	7	7.6	7	83	14	63	15	0	7	76	1.00
11704957--11705012	20	2.8	19	79	15	69	16	0	7	76	0.99
11704962--11705011	13	3.8	13	87	12	75	16	0	8	76	1.02
11704961--11705018	26	2.2	27	84	9	75	17	0	6	75	1.01
11704960--11705027	27	2.5	27	79	13	77	16	1	5	76	1.05
11705101--11705180	23	3.5	22	71	18	81	26	5	10	58	1.51
11705103--11705187	25	3.5	24	74	18	86	25	4	9	60	1.48
11705151--11705221	24	3.1	23	82	9	83	26	1	9	61	1.35
11708072--11708574	199	2.5	200	82	4	550	40	14	17	27	1.89
11708566--11708597	15	2.1	15	100	0	64	46	37	0	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11712334--11712372	15	2.6	15	87	0	60	43	7	20	28	1.79
11713548--11713754	44	4.6	44	72	13	145	34	7	12	44	1.71
11713553--11713622	21	3.2	22	88	11	108	34	10	11	44	1.74
11713687--11713734	23	2.1	23	88	3	71	37	8	6	47	1.59
11713757--11713813	24	2.5	22	80	5	69	40	5	10	43	1.62
11714081--11714124	21	2.2	19	84	12	52	34	2	9	54	1.44
11714149--11714281	18	7.4	18	72	11	51	35	14	8	42	1.75
11714133--11714302	36	4.8	36	69	8	107	35	14	9	40	1.78
11714151--11714352	89	2.3	89	80	5	203	33	11	10	44	1.74
11714116--11714325	54	3.9	54	73	13	159	33	12	10	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113