genome.fa.s68.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  32  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10026486--10026527	4	11.0	4	80	19	54	0	23	0	76	0.79
10027987--10028034	20	2.4	20	86	6	62	37	0	6	56	1.25
10028103--10028142	21	2.0	20	85	5	53	52	0	0	47	1.00
10028115--10028169	25	2.2	25	87	3	76	43	0	3	52	1.18
10028860--10028907	24	2.0	25	95	4	89	31	0	6	62	1.20
10028976--10029068	5	17.8	5	70	19	57	74	2	4	19	1.09
10028976--10029061	16	5.5	15	77	14	70	74	2	3	19	1.07
10029897--10029956	3	22.0	3	77	16	51	66	1	1	30	1.11
10029989--10030035	3	16.3	3	84	8	53	61	2	2	34	1.20
10030210--10030700	115	4.3	115	82	1	556	44	16	21	18	1.87
10038272--10038302	15	2.0	16	93	6	55	6	9	0	83	0.79
10042043--10042087	5	8.8	5	80	4	54	75	0	6	17	1.01
10042012--10042086	15	4.9	15	75	15	66	74	1	6	17	1.10
10042060--10042093	10	3.3	10	87	4	50	76	0	5	17	0.98
10042040--10042093	21	2.6	21	80	11	65	74	0	7	18	1.05
10042044--10042094	26	1.9	27	88	4	77	74	0	7	17	1.05
10042013--10042087	16	4.6	16	74	14	64	74	1	6	17	1.10
10042902--10042930	3	10.0	3	92	7	51	68	0	0	31	0.89
10042990--10043014	13	1.9	13	100	0	50	64	0	0	36	0.94
10043337--10043410	29	2.7	27	80	16	80	54	2	2	40	1.29
10044453--10044478	3	8.7	3	100	0	52	69	0	0	30	0.89
10061154--10061224	29	2.4	29	90	4	108	57	0	5	36	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10068142--10068168	14	1.9	14	100	0	54	85	0	7	7	0.75
10071874--10071898	11	2.3	11	100	0	50	36	28	16	20	1.93
10072954--10073001	23	2.1	23	84	7	62	35	2	27	35	1.69
10078688--10078761	28	2.6	28	83	10	89	51	2	2	43	1.30
10093152--10093210	31	1.9	31	100	0	118	35	10	6	47	1.64
10095604--10095651	24	2.0	24	95	0	87	39	20	22	16	1.92
10100162--10100191	7	4.3	7	95	0	51	0	46	16	36	1.47
10100826--10100919	47	2.0	47	97	0	179	27	18	12	41	1.86
10101282--10101321	20	2.0	20	85	0	53	42	0	5	52	1.23
10102566--10102620	24	2.3	24	84	3	76	61	3	0	34	1.13
10102728--10102780	22	2.4	21	72	9	52	45	0	5	49	1.26
10102728--10102787	23	2.7	23	72	12	63	48	0	5	46	1.24
10104527--10104583	26	2.1	27	81	9	64	49	5	3	42	1.42
10105153--10105214	30	2.1	30	82	11	74	30	6	0	62	1.20
10105218--10105296	34	2.3	34	86	6	106	34	2	10	53	1.48
10105461--10105512	17	2.9	17	76	15	52	23	0	3	73	1.00
10105461--10105552	12	7.3	12	74	21	57	23	1	3	71	1.07
10105470--10105556	13	6.6	13	70	17	56	22	1	3	72	1.07
10105461--10105552	26	3.6	27	76	16	81	23	1	3	71	1.07
10107487--10107524	20	1.9	19	89	5	58	18	2	26	52	1.58
10107512--10107662	8	19.2	8	66	21	52	25	0	26	48	1.52
10107582--10107623	16	2.7	16	85	3	59	21	0	33	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10107624--10107654	15	2.1	15	100	0	62	32	0	19	48	1.49
10108201--10108244	21	2.1	21	83	8	54	15	2	4	77	1.04
10108148--10108355	104	2.0	104	99	0	407	29	6	4	59	1.44
10108305--10108348	21	2.1	21	83	8	54	15	2	4	77	1.04
10111121--10111198	34	2.3	34	84	4	104	48	8	2	39	1.48
10111913--10111965	15	3.4	16	76	5	56	54	1	1	41	1.22
10129652--10129676	5	5.0	5	100	0	50	60	0	0	40	0.97
10129966--10130009	20	2.2	20	88	8	63	72	2	4	20	1.13
10138047--10138080	17	1.9	18	88	5	52	67	0	23	8	1.18
10139817--10139856	20	2.1	19	85	4	53	2	25	12	60	1.45
10143498--10143566	33	2.1	33	91	0	111	50	10	8	30	1.66
10146934--10146985	15	3.5	15	76	10	61	48	0	1	50	1.12
10146943--10147023	24	3.3	23	79	16	85	51	0	1	46	1.08
10146977--10147027	15	3.7	15	78	21	58	54	0	0	45	0.99
10146944--10147041	27	3.8	25	78	14	85	51	0	2	46	1.12
10147242--10147284	21	2.0	22	86	4	61	55	0	4	39	1.20
10150306--10150336	4	7.5	4	96	3	53	25	0	0	74	0.82
10150316--10150373	23	2.5	23	78	10	57	36	5	0	58	1.20
10151335--10151369	3	11.7	3	100	0	70	34	0	0	65	0.93
10151510--10151579	35	2.0	35	83	5	88	44	14	5	35	1.69
10158514--10158570	30	2.0	30	82	6	73	31	21	5	42	1.75
10160296--10160348	24	2.1	27	86	10	76	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10160496--10160554	27	2.2	27	81	6	75	45	1	0	52	1.10
10160638--10160700	21	3.0	20	71	15	56	41	6	0	52	1.27
10162252--10162283	10	3.1	11	86	13	50	40	0	0	59	0.97
10172510--10172585	39	1.9	39	97	0	143	47	23	13	15	1.81
10173714--10173749	15	2.2	17	90	9	58	58	2	5	33	1.36
10174488--10174528	21	1.9	21	85	5	55	48	0	2	48	1.14
10174517--10174653	32	4.4	31	75	16	99	51	1	1	45	1.19
10176584--10176620	2	18.5	2	100	0	74	51	0	48	0	1.00
10179062--10179107	13	3.4	14	85	8	51	43	2	2	52	1.25
10179071--10179107	13	2.8	14	88	12	60	51	0	0	48	1.00
10179216--10179300	24	3.5	24	83	15	93	50	0	0	49	1.00
10179228--10179282	13	3.8	15	72	22	55	49	0	0	50	1.00
10179212--10179307	25	4.0	25	89	7	146	50	0	0	50	1.00
10179208--10179291	9	9.8	9	73	17	63	50	0	0	50	1.00
10179417--10179731	15	21.0	15	70	20	112	42	0	1	55	1.14
10179388--10179514	53	2.4	54	82	5	150	35	2	1	60	1.19
10179420--10179737	18	18.8	17	69	24	162	42	0	1	55	1.14
10179554--10179713	85	1.9	85	75	12	143	43	1	1	53	1.16
10179488--10179737	21	11.5	22	68	19	93	44	0	1	54	1.13
10179465--10179739	89	3.2	86	72	21	225	43	1	1	54	1.14
10180814--10180898	36	2.3	38	81	4	102	43	1	2	52	1.21
10180835--10180927	43	2.2	42	83	14	111	43	2	3	51	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10180917--10180955	18	2.1	19	86	13	55	33	0	0	66	0.92
10180922--10180960	21	1.9	20	89	5	60	33	0	0	66	0.92
10181045--10181108	21	3.2	21	68	22	57	51	1	1	45	1.20
10181053--10181095	17	2.7	16	89	10	70	51	0	2	46	1.13
10181075--10181162	44	2.0	44	84	6	117	50	3	2	44	1.31
10183496--10183597	52	2.0	52	86	3	143	27	19	6	46	1.75
10186584--10186633	21	2.4	22	80	6	59	58	0	0	42	0.98
10187138--10187165	2	14.0	2	100	0	56	50	0	0	50	1.00
10188929--10188973	22	2.1	21	83	4	54	57	8	0	33	1.30
10189237--10189290	2	28.5	2	82	17	71	50	0	1	48	1.11
10189326--10189399	20	3.8	19	71	7	69	58	0	0	41	0.98
10189376--10189438	17	4.0	16	68	15	51	42	1	1	53	1.19
10189410--10189461	26	1.9	28	84	7	72	42	5	0	51	1.25
10198841--10198893	26	2.0	26	85	7	70	64	9	0	26	1.24
10199112--10199163	27	1.9	26	84	7	68	44	1	0	53	1.11
10199611--10199636	10	2.6	10	100	0	52	30	0	7	61	1.24
10200850--10200882	15	2.2	15	100	0	66	42	0	15	42	1.46
10201877--10201920	2	21.0	2	81	9	52	45	9	0	45	1.35
10201979--10202056	20	4.0	20	72	9	63	47	1	1	50	1.17
10206109--10206200	44	2.1	44	83	0	112	46	6	10	35	1.65
10206109--10206200	22	4.2	22	81	0	85	46	6	10	35	1.65
10206349--10206402	22	2.5	22	84	0	72	40	0	14	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10206477--10206573	39	2.4	42	83	13	114	48	9	9	32	1.67
10206620--10206716	45	2.2	45	83	5	126	58	3	4	34	1.32
10206611--10206716	22	4.8	22	71	6	70	56	2	4	35	1.35
10206640--10206799	44	3.7	43	74	9	128	49	5	8	36	1.57
10206719--10206777	22	2.7	21	73	17	57	40	8	11	38	1.72
10206830--10206910	22	3.7	23	73	9	69	46	8	7	37	1.63
10206945--10207008	22	2.9	22	80	0	74	48	4	7	39	1.53
10207270--10207346	22	3.6	21	73	5	55	54	3	9	32	1.50
10207284--10207382	44	2.3	44	85	1	137	52	4	8	35	1.50
10207284--10207382	22	4.5	22	76	1	101	52	4	8	35	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113