genome.fa.s68.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  67  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716391--15716432	5	8.8	5	84	10	61	80	2	0	16	0.81
15716396--15716434	18	2.2	17	95	4	69	82	2	0	15	0.79
15717228--15717275	13	3.8	13	77	5	53	85	2	8	4	0.80
15717233--15717275	12	3.7	11	85	11	52	88	0	6	4	0.63
15717234--15717281	17	2.8	17	81	12	53	85	0	6	8	0.74
15717255--15717284	14	2.1	15	93	6	53	83	0	0	16	0.65
15717353--15717396	3	15.0	3	86	13	65	65	0	0	34	0.93
15718955--15718995	17	2.3	18	83	8	57	19	2	4	73	1.13
15718976--15719023	17	3.1	14	81	18	60	31	0	6	62	1.20
15719781--15719818	16	2.4	16	86	0	58	31	0	2	65	1.06
15727052--15727094	3	14.3	3	100	0	86	32	0	0	67	0.91
15727434--15727481	15	3.2	14	77	11	51	22	8	27	41	1.82
15727419--15727481	30	2.1	30	82	5	74	23	7	23	44	1.80
15727436--15727492	30	1.9	30	82	13	73	24	7	26	42	1.80
15727839--15727922	5	16.4	5	71	20	59	17	3	3	75	1.10
15734135--15734235	5	20.2	5	73	15	59	21	2	2	72	1.12
15737180--15737384	61	3.4	60	75	8	182	20	20	15	43	1.87
15737950--15738052	3	34.3	3	92	0	125	25	0	7	66	1.25
15738855--15738902	19	2.5	19	90	6	71	16	6	6	70	1.28
15739856--15739898	18	2.4	18	88	0	59	4	6	9	79	1.06
15749604--15749700	44	2.2	44	85	7	126	60	13	13	12	1.59
15750419--15750605	60	3.1	60	82	5	225	18	20	14	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15750419--15750643	61	3.7	59	77	8	177	19	21	13	45	1.85
15750865--15751018	55	2.8	55	72	12	127	22	17	15	44	1.86
15752157--15752253	18	5.4	18	64	20	51	19	5	4	71	1.22
15753522--15753563	21	2.0	21	85	4	57	0	21	9	69	1.17
15756509--15756640	20	6.9	19	72	17	78	49	9	5	35	1.59
15756585--15756631	20	2.3	20	96	0	85	51	17	8	23	1.72
15756699--15756754	24	2.3	25	78	12	62	55	10	5	28	1.56
15756722--15756914	20	10.2	20	76	13	135	52	11	5	30	1.61
15756821--15756884	32	2.0	32	84	6	85	56	10	3	29	1.49
15757539--15757568	12	2.5	12	100	0	60	70	6	0	23	1.11
15757535--15757588	12	4.4	12	77	11	56	72	3	0	24	1.01
15759785--15759827	16	2.6	17	77	3	52	41	27	16	13	1.86
15759822--15759887	22	3.2	22	60	27	54	43	10	18	27	1.82
15759815--15759955	39	3.6	39	86	5	178	42	13	14	29	1.84
15759815--15760000	78	2.4	78	79	5	191	43	15	13	27	1.85
15761957--15761991	2	17.5	2	100	0	70	0	0	48	51	1.00
15765228--15765316	46	2.0	45	86	6	126	26	12	22	38	1.90
15765401--15765476	9	8.0	9	71	20	57	63	11	3	21	1.44
15772580--15772613	15	2.3	15	89	0	50	23	0	0	76	0.79
15773132--15773219	23	3.7	22	75	14	77	34	3	7	54	1.46
15773132--15773232	23	4.3	23	75	12	62	34	3	7	53	1.49
15773749--15773811	26	2.5	24	78	12	65	46	6	3	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15774418--15774456	3	13.0	3	100	0	78	33	0	0	66	0.92
15775164--15775220	30	1.9	30	88	0	87	63	3	17	15	1.45
15775854--15775913	31	1.9	31	93	0	102	46	6	0	46	1.29
15778727--15778758	2	16.0	2	93	0	55	50	3	0	46	1.17
15782148--15782173	3	8.7	3	100	0	52	69	0	0	30	0.89
15782144--15782279	75	1.9	70	83	7	173	71	5	0	22	1.11
15783958--15784333	59	6.4	58	83	6	461	33	13	6	46	1.69
15784368--15784454	6	14.7	6	71	20	58	78	1	5	14	1.00
15784357--15784454	17	5.4	18	73	17	87	77	2	5	15	1.03
15784360--15784453	5	18.4	5	73	18	70	77	2	5	14	1.04
15785344--15785454	24	4.8	22	78	15	109	65	0	6	27	1.22
15785347--15785454	47	2.3	46	81	9	121	65	0	6	26	1.23
15785514--15785583	25	2.8	26	80	6	74	65	2	4	27	1.25
15785777--15785803	12	2.2	12	100	0	54	0	0	7	92	0.38
15785769--15785803	11	3.1	11	88	8	52	2	0	8	88	0.61
15785811--15785935	41	3.0	41	90	1	178	36	22	18	22	1.95
15785912--15785959	24	2.0	24	95	0	87	39	14	20	25	1.91
15785871--15786001	65	2.0	66	91	4	212	36	19	19	24	1.95
15785936--15786105	41	4.1	42	91	4	256	35	23	18	22	1.96
15786086--15786124	19	2.1	19	95	0	69	30	38	12	17	1.88
15786002--15786208	103	2.0	103	97	0	387	33	26	17	21	1.96
15786105--15786362	41	6.1	42	87	9	346	32	25	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15786043--15786165	60	2.0	62	93	3	214	34	28	16	21	1.95
15786343--15786379	19	1.9	19	100	0	74	32	13	21	32	1.92
15786301--15786422	61	2.0	60	90	1	190	33	18	18	29	1.95
15786362--15786466	41	2.5	42	93	1	176	33	20	18	27	1.96
15786263--15786565	102	3.0	102	89	5	458	33	21	17	27	1.96
15786414--15786524	57	1.9	58	94	1	197	28	24	16	30	1.96
15786471--15786604	41	3.2	41	91	2	223	35	23	16	24	1.95
15787874--15787921	10	4.7	10	89	2	69	0	14	0	85	0.60
15787874--15787950	24	3.4	23	81	13	65	5	16	0	77	0.94
15788273--15788314	9	4.7	9	80	19	52	9	4	0	85	0.72
15788809--15788860	22	2.4	21	71	9	50	61	13	7	17	1.54
15791859--15792185	57	5.7	57	87	5	489	34	13	7	44	1.71
15791859--15792435	116	4.8	114	74	14	500	33	13	7	45	1.70
15792171--15792202	16	2.0	16	100	0	64	37	12	0	50	1.41
15792107--15792259	74	2.1	74	96	2	281	33	12	6	47	1.67
15792187--15792436	59	4.3	59	86	6	330	33	13	6	46	1.70
15792056--15792318	132	2.0	131	88	5	397	34	13	7	44	1.72
15792181--15792437	117	2.2	117	83	5	349	32	13	6	47	1.68
15792453--15792538	12	6.9	13	71	20	60	77	2	4	15	1.02
15792471--15792541	6	11.7	6	73	19	58	80	1	4	14	0.93
15792463--15792540	5	15.4	5	74	15	63	79	2	3	14	0.98
15792564--15792688	4	30.2	4	73	13	85	71	3	2	23	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15792590--15792687	21	4.6	22	71	18	82	69	3	3	24	1.17
15792590--15792691	43	2.4	41	84	11	127	69	2	2	24	1.16
15792563--15792728	22	7.8	22	71	18	104	68	3	4	24	1.22
15792791--15792871	25	3.2	25	79	6	85	69	2	3	24	1.17
15792829--15792900	11	6.2	12	78	12	62	72	4	2	20	1.15
15796184--15796245	14	4.8	13	70	21	58	69	1	0	29	0.98
15796300--15796358	31	1.9	31	86	3	84	66	10	5	18	1.40
15798902--15798972	36	2.0	36	86	5	99	45	4	18	32	1.69
15803428--15803470	17	2.6	16	82	13	59	62	0	30	6	1.21
15803964--15804003	20	2.0	20	85	9	55	47	0	15	37	1.45
15806453--15806492	22	1.9	20	85	10	53	42	2	5	50	1.37
15806617--15806655	16	2.4	16	83	8	53	61	15	5	17	1.51
15806724--15808809	787	2.6	783	78	5	2196	35	21	9	33	1.85
15811095--15811151	21	2.7	21	81	7	71	63	10	3	22	1.42
15811668--15811706	17	2.4	16	86	4	51	15	5	2	76	1.06
15811676--15811709	8	4.1	8	88	3	50	14	5	0	79	0.91
15813960--15813990	16	2.0	16	93	6	55	48	0	0	51	1.00
15815053--15815085	17	2.0	17	88	5	50	63	0	3	33	1.10
15815156--15815236	29	2.8	29	77	18	73	61	9	1	27	1.35
15815277--15815324	24	2.0	24	88	11	73	70	4	8	16	1.27
15815393--15815457	27	2.5	25	76	14	60	30	3	6	60	1.37
15815414--15815493	20	4.1	19	75	10	63	30	1	6	62	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15825056--15825345	144	2.0	144	95	0	526	43	12	14	30	1.82
15825793--15825978	95	2.0	95	82	8	227	37	8	12	41	1.72
15826194--15826238	18	2.6	17	80	19	58	71	0	6	22	1.09
15826629--15826667	20	2.0	20	90	10	62	48	30	2	17	1.61
15827398--15827508	4	28.2	4	69	17	63	20	3	3	72	1.16
15827381--15827474	34	2.8	33	79	9	102	19	3	4	73	1.14
15827385--15827492	14	7.6	13	73	19	58	20	2	3	73	1.12
15827453--15827497	15	3.3	14	87	9	58	22	4	0	73	1.01
15829181--15829211	16	1.9	16	93	0	53	61	0	3	35	1.12
15832437--15832573	70	2.0	70	86	2	195	56	4	17	21	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113