genome.fa.s68.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  15  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4935581--4935627	18	2.6	18	89	0	76	59	2	0	38	1.09
4935588--4935631	23	1.9	23	90	9	72	59	2	0	38	1.10
4935581--4935635	18	3.3	15	85	12	56	61	1	0	36	1.06
4935622--4935694	21	3.5	21	66	17	53	50	0	1	47	1.09
4935652--4935693	11	3.6	11	84	15	50	50	0	0	50	1.00
4935722--4935759	19	2.0	19	94	0	67	50	0	0	50	1.00
4935757--4935795	17	2.2	18	86	4	53	48	0	0	51	1.00
4935739--4935817	16	4.9	17	79	14	78	50	0	0	49	1.00
4935700--4935811	34	3.4	34	69	24	89	49	0	0	50	1.06
4935788--4935852	26	2.6	25	86	11	89	49	1	0	49	1.10
4935780--4935844	16	4.5	15	70	27	52	49	1	0	49	1.10
4937138--4937189	18	2.7	18	79	11	50	38	5	1	53	1.36
4956638--4956681	20	2.2	20	95	0	79	45	27	4	22	1.72
4960515--4960544	4	7.5	4	100	0	60	76	0	0	23	0.78
4965316--4965389	34	2.2	33	85	7	96	66	0	5	28	1.14
4984196--4984265	21	3.2	20	70	21	52	35	2	0	61	1.11
4984194--4984265	24	3.1	24	76	11	87	36	2	0	61	1.11
5016910--5016980	24	2.9	24	75	20	67	63	2	0	33	1.09
5016884--5016987	34	3.2	32	76	15	90	60	1	0	36	1.14
5020747--5020789	18	2.5	17	85	7	59	23	2	6	67	1.27
5021032--5021071	15	2.9	14	82	10	55	80	0	20	0	0.72
5021025--5021061	20	1.9	19	89	10	58	75	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5021306--5021812	46	10.6	47	78	11	428	38	19	10	31	1.86
5021385--5021812	46	9.1	46	81	7	432	38	20	10	30	1.86
5021838--5022072	49	4.8	48	81	5	247	34	19	12	32	1.90
5021838--5022072	98	2.4	98	82	2	285	34	19	12	32	1.90
5029014--5029062	19	2.5	19	81	12	55	16	16	6	61	1.53
5034312--5034358	21	2.1	23	84	7	62	68	4	0	27	1.08
5035311--5035392	19	4.0	21	76	21	77	79	0	19	1	0.80
5035326--5035395	11	5.9	12	83	9	90	82	0	15	1	0.73
5035312--5035393	18	4.8	17	81	14	80	80	0	18	1	0.78
5035328--5035395	28	2.5	27	77	20	70	82	0	16	1	0.75
5035324--5035396	13	5.7	12	78	13	74	82	0	16	1	0.75
5036719--5036792	6	12.3	6	92	4	78	0	17	8	74	1.05
5036726--5036789	6	10.8	6	96	1	94	0	17	9	73	1.08
5044611--5044640	15	2.0	15	93	0	51	56	6	3	33	1.42
5044588--5044761	13	14.9	12	68	20	68	63	2	2	31	1.19
5044640--5044715	22	3.7	20	77	16	66	67	2	2	27	1.18
5044667--5044789	23	5.4	22	72	19	83	66	4	1	27	1.19
5044667--5044723	23	2.5	23	91	2	89	70	3	1	24	1.13
5044675--5044758	28	2.9	28	77	13	73	69	2	1	27	1.09
5044818--5044857	19	2.1	19	85	4	53	42	0	7	50	1.30
5045084--5045111	14	2.0	14	100	0	56	50	7	7	35	1.57
5051503--5051564	30	2.1	30	90	3	99	56	3	1	38	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5054356--5054399	15	2.9	15	80	6	52	52	4	0	43	1.22
5054356--5054399	16	2.8	16	82	3	54	52	4	0	43	1.22
5055934--5055977	15	2.7	16	83	13	54	47	0	0	52	1.00
5055970--5056048	35	2.3	33	86	4	104	67	0	1	31	0.99
5055974--5056048	33	2.2	35	85	4	100	68	0	1	30	0.98
5061689--5061714	9	2.9	9	100	0	52	57	0	34	7	1.27
5061691--5061937	54	4.5	54	81	7	264	45	12	22	19	1.84
5061672--5061940	111	2.4	111	84	6	335	44	13	23	19	1.85
5061913--5061973	3	20.3	3	93	0	104	63	3	32	0	1.10
5067240--5067264	13	1.9	13	100	0	50	48	28	8	16	1.74
5079419--5079632	59	3.6	58	75	9	198	36	11	4	47	1.60
5079665--5079791	55	2.2	56	82	10	152	36	8	4	50	1.54
5081180--5081241	18	3.4	18	75	20	58	12	8	6	72	1.26
5081430--5081474	18	2.7	17	80	12	58	77	2	2	17	0.97
5081690--5081812	42	2.9	42	86	4	167	45	20	10	23	1.82
5081817--5081950	42	3.2	42	80	5	112	46	14	9	29	1.77
5082080--5082140	31	2.0	31	84	12	81	32	11	11	44	1.76
5082776--5082964	71	2.7	71	81	3	218	32	22	8	35	1.86
5083581--5083626	22	2.1	22	88	8	67	6	15	0	78	0.95
5086931--5087187	58	4.3	60	78	12	210	36	10	4	48	1.58
5086871--5087264	59	6.8	58	74	13	233	35	11	4	48	1.60
5087157--5087266	56	2.0	56	85	5	152	33	14	3	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5088073--5088105	17	2.0	17	88	5	50	15	15	12	57	1.65
5088867--5088903	5	7.6	5	82	17	51	75	2	0	21	0.92
5097867--5097900	2	17.0	2	93	0	59	47	2	0	50	1.16
5120284--5120310	2	13.5	2	100	0	54	48	0	0	51	1.00
5121584--5121636	24	2.3	21	81	18	54	58	0	3	37	1.16
5121718--5121747	15	2.1	14	93	6	51	50	0	0	50	1.00
5123893--5123953	30	2.0	30	96	0	113	50	4	3	40	1.40
5125253--5125291	19	2.0	20	90	5	62	48	7	12	30	1.69
5131947--5131979	17	2.0	17	88	5	50	72	0	0	27	0.85
5136507--5136540	16	2.1	16	89	10	52	41	5	0	52	1.25
5140204--5140238	18	1.9	18	88	0	52	54	0	0	45	0.99
5152160--5152198	2	19.5	2	94	0	69	0	48	2	48	1.15
5155857--5155929	32	2.3	32	95	0	128	35	13	10	39	1.80
5155870--5155941	32	2.5	29	86	13	96	44	8	6	40	1.61
5155954--5156021	20	3.0	22	79	14	61	67	0	0	32	0.91
5155974--5156021	20	2.4	20	86	13	64	68	0	0	31	0.90
5158109--5158141	7	4.7	7	96	0	57	15	0	54	30	1.41
5160534--5160598	28	2.3	28	100	0	130	6	36	10	46	1.64
5160821--5161053	126	1.8	126	90	0	376	28	26	15	29	1.96
5161610--5161646	3	12.3	3	88	0	56	64	5	29	0	1.15
5163814--5163838	2	12.5	2	100	0	50	0	52	0	48	1.00
5166218--5166470	129	2.0	129	95	0	452	24	24	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5171901--5172130	109	2.1	108	89	1	343	29	16	13	40	1.86
5181689--5181729	19	2.1	19	86	4	55	46	26	4	21	1.72
5183913--5183937	2	12.5	2	100	0	50	48	0	0	52	1.00
5184128--5184168	17	2.6	16	88	7	57	63	2	0	34	1.08
5202373--5202511	73	1.9	73	88	2	210	34	3	8	53	1.49
5208962--5208994	13	2.4	14	90	5	50	54	0	15	30	1.41
5209307--5209346	21	1.9	21	89	0	62	52	0	0	47	1.00
5210616--5210669	23	2.4	23	78	12	67	51	0	1	46	1.11
5210644--5210672	15	2.0	15	93	6	51	41	0	0	58	0.98
5211202--5211229	2	14.0	2	100	0	56	50	0	0	50	1.00
5226500--5226526	2	13.5	2	100	0	54	0	48	0	51	1.00
5226526--5226555	2	15.5	2	93	6	53	50	0	0	50	1.00
5227400--5227448	23	2.0	26	88	11	77	30	0	2	67	1.02
5227526--5227601	29	2.6	29	80	2	80	59	3	2	34	1.30
5230027--5230065	18	2.2	18	90	0	60	56	7	5	30	1.49
5245606--5245648	22	2.0	22	86	9	61	53	0	0	46	1.00
5249812--5249855	16	2.6	17	86	10	56	61	0	0	38	0.96
5252023--5252069	22	2.1	22	88	4	67	46	0	19	34	1.50
5252055--5252131	34	2.2	35	81	6	95	70	0	6	23	1.11
5252054--5252136	35	2.3	35	84	10	98	69	0	6	24	1.10
5262263--5262329	24	2.7	25	84	9	84	46	11	2	38	1.56
5262386--5262456	27	2.7	26	72	12	72	52	5	2	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5262559--5262595	13	2.8	14	84	12	51	59	0	0	40	0.97
5272449--5272490	2	21.0	2	95	0	75	50	2	0	47	1.14
5275059--5275097	16	2.4	16	82	4	51	71	7	7	12	1.29
5275731--5275771	20	2.0	21	85	4	57	46	4	0	48	1.23
5275737--5275778	20	2.0	21	81	9	50	47	4	0	47	1.23
5280282--5280364	27	3.3	24	74	14	78	50	2	0	46	1.14
5280387--5280427	20	2.0	20	90	0	64	21	12	12	53	1.70
5281158--5281186	2	14.5	2	100	0	58	51	0	0	48	1.00
5291114--5291189	37	2.1	37	100	0	152	28	18	26	26	1.98
5300002--5300051	17	2.8	18	71	17	50	58	0	0	42	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113