genome.fa.s68.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  65  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15357795--15357955	82	1.9	81	90	7	252	26	22	18	32	1.97
15358752--15358784	14	2.3	15	89	5	50	54	0	0	45	0.99
15358794--15358840	19	2.5	19	78	0	58	53	2	0	44	1.12
15363237--15363296	29	2.1	29	93	0	102	33	18	8	40	1.80
15367165--15367216	13	3.8	13	80	9	59	28	23	9	38	1.86
15367176--15367222	15	3.3	15	79	11	62	34	23	6	36	1.80
15367165--15367222	28	2.1	28	90	0	89	31	22	8	37	1.84
15367841--15367930	43	2.1	42	85	2	117	26	6	20	46	1.75
15368138--15368273	44	3.0	45	73	10	118	32	10	16	40	1.83
15368258--15368310	19	2.8	19	80	13	65	28	13	13	45	1.80
15368303--15368352	17	2.9	17	87	0	82	28	8	12	52	1.66
15368443--15368797	18	19.8	18	67	19	97	29	10	11	48	1.73
15368481--15368663	18	9.9	18	71	15	106	27	9	13	49	1.72
15368629--15368686	28	2.2	26	87	6	80	27	8	13	50	1.71
15368655--15368706	19	2.7	20	82	11	63	32	13	9	44	1.76
15368695--15368816	53	2.3	53	80	6	149	31	9	12	47	1.72
15368725--15368794	35	2.0	36	97	2	133	30	10	11	48	1.72
15368734--15368823	18	5.1	18	77	17	100	27	10	12	50	1.72
15368735--15368849	18	6.6	17	73	9	90	28	9	11	50	1.69
15368735--15368849	35	3.3	34	84	11	128	28	9	11	50	1.69
15373733--15373762	8	3.6	8	91	8	51	76	10	3	10	1.12
15376824--15376872	24	2.1	22	82	17	55	81	4	8	6	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15381382--15381410	15	1.9	15	100	0	58	6	27	24	41	1.80
15383389--15383453	6	11.4	5	87	11	58	72	1	7	18	1.17
15383392--15383453	11	5.4	11	83	16	65	72	1	8	17	1.17
15384627--15384772	41	3.6	39	78	9	134	44	13	16	25	1.84
15384775--15385039	133	2.0	131	91	1	431	34	15	15	34	1.89
15385030--15385138	34	3.1	34	80	5	110	40	14	13	31	1.85
15388355--15388401	22	2.1	22	100	0	94	51	8	12	27	1.69
15392332--15392618	142	2.0	142	94	0	502	33	22	9	34	1.87
15393487--15393521	18	1.9	18	94	0	61	31	17	14	37	1.89
15396661--15396693	13	2.4	14	85	10	50	39	15	6	39	1.72
15399700--15399742	22	2.0	22	90	9	70	48	11	4	34	1.60
15404511--15404576	34	1.9	34	81	6	80	50	1	0	48	1.10
15405692--15405733	16	2.4	18	80	11	52	23	4	0	71	1.05
15410968--15411000	13	2.4	14	85	10	50	39	15	6	39	1.72
15414005--15414047	22	2.0	22	90	9	70	48	11	4	34	1.60
15418907--15418958	21	2.5	21	81	6	61	38	0	0	61	0.96
15429805--15429846	15	2.7	16	89	10	61	16	11	0	71	1.14
15435192--15435246	20	2.8	19	91	5	83	50	7	1	40	1.40
15435341--15435380	11	3.6	11	82	0	53	37	5	5	52	1.45
15435462--15435561	21	4.9	20	72	20	66	55	9	2	34	1.43
15435462--15435538	38	2.0	39	82	10	95	54	10	2	32	1.48
15435482--15435561	10	8.1	10	72	13	58	56	8	1	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15435524--15435560	9	3.5	11	82	17	51	64	2	0	32	1.07
15435551--15435622	27	2.7	26	77	12	74	58	1	4	36	1.26
15435735--15435803	20	3.4	19	80	13	75	59	4	4	31	1.37
15435735--15435810	21	3.7	20	81	12	82	59	5	5	30	1.42
15436022--15436056	18	1.9	18	88	0	52	28	0	2	68	1.04
15436161--15436196	18	2.0	18	88	0	54	27	0	11	61	1.30
15436188--15436285	32	3.2	30	76	20	87	33	5	3	58	1.36
15436188--15436311	9	12.0	11	66	22	56	36	4	2	56	1.34
15436147--15436305	20	7.9	19	69	14	79	35	3	4	56	1.37
15436189--15436311	21	5.9	20	76	13	90	36	4	2	56	1.34
15436294--15436368	31	2.5	29	76	8	69	40	0	6	53	1.27
15436295--15436370	32	2.4	30	77	16	75	39	0	6	53	1.27
15436356--15436507	9	16.4	9	66	16	62	30	3	3	63	1.26
15436406--15436451	21	2.2	21	84	7	58	30	4	6	58	1.43
15436426--15436491	29	2.3	29	78	5	71	31	3	1	63	1.19
15441051--15441123	37	1.9	38	81	8	87	41	4	1	53	1.28
15441881--15442252	142	2.6	140	79	6	381	30	13	12	43	1.81
15445660--15445703	21	2.1	21	86	0	61	20	6	13	59	1.57
15448321--15448354	14	2.4	14	90	0	50	50	5	11	32	1.63
15448474--15448542	24	2.8	23	77	12	75	50	1	1	46	1.19
15448632--15448787	13	11.6	14	71	19	95	42	0	1	55	1.12
15448637--15448782	23	6.6	23	74	14	146	43	0	1	55	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15448652--15448791	41	3.3	41	82	7	174	42	0	1	55	1.08
15448637--15448782	64	2.2	68	86	4	210	43	0	1	55	1.08
15448894--15448943	3	17.0	3	95	4	93	66	0	0	34	0.92
15448942--15448987	3	15.3	3	100	0	92	32	0	0	67	0.91
15454413--15454455	14	3.2	14	80	9	54	20	2	18	58	1.50
15454968--15455048	3	25.3	3	74	20	51	28	1	3	66	1.16
15456813--15456845	14	2.4	14	90	10	50	9	6	18	66	1.40
15457464--15457687	97	2.3	96	81	8	231	33	12	14	39	1.83
15457457--15457771	65	4.9	65	78	8	268	33	12	15	38	1.85
15457531--15457771	97	2.5	98	80	6	247	31	12	17	38	1.86
15457465--15457771	32	9.5	33	74	5	223	32	12	15	39	1.86
15457498--15457804	32	9.5	33	73	6	196	31	12	15	39	1.85
15458173--15458221	18	2.7	18	78	9	55	28	0	0	71	0.86
15458182--15458278	28	3.5	28	79	12	96	28	1	2	68	1.08
15458229--15458276	3	14.7	3	95	4	60	29	0	0	70	0.87
15459765--15459798	12	2.6	13	86	13	52	8	14	17	58	1.61
15466740--15467562	49	17.3	49	80	7	787	29	13	21	35	1.92
15466739--15467562	285	2.9	284	85	4	1049	29	13	21	35	1.92
15466741--15467562	334	2.5	332	81	8	946	29	13	22	35	1.92
15467862--15467909	3	15.7	3	95	4	87	33	0	0	66	0.92
15467928--15467991	13	4.7	13	81	9	74	1	20	1	76	0.95
15467929--15467992	28	2.3	27	82	10	76	1	21	1	75	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15472791--15472858	33	2.1	33	94	0	118	47	7	16	29	1.73
15476683--15476765	38	2.1	40	82	8	100	53	13	4	28	1.60
15476846--15476918	20	3.8	20	81	3	96	54	10	5	28	1.57
15476838--15476924	18	4.5	18	75	13	84	57	10	4	27	1.51
15477622--15477651	15	1.9	16	93	6	53	63	13	6	16	1.50
15478521--15478657	39	3.5	39	80	5	161	35	19	14	30	1.92
15482100--15482146	9	5.4	9	82	7	53	78	2	0	19	0.85
15482103--15482147	17	2.8	17	81	18	60	75	2	0	22	0.91
15481912--15482293	212	1.8	211	82	6	495	47	8	11	33	1.69
15489401--15489439	20	1.9	21	89	5	62	46	10	5	38	1.60
15489420--15489538	19	6.3	19	81	9	109	53	10	4	31	1.53
15495259--15495391	3	45.7	3	69	18	59	69	3	2	24	1.17
15495262--15495316	5	10.4	5	92	5	65	80	3	0	16	0.86
15495262--15495306	22	2.0	22	95	0	81	80	0	0	20	0.72
15495357--15495399	21	2.1	20	91	4	68	72	0	4	23	1.04
15495666--15495704	20	2.0	20	90	10	62	0	38	0	61	0.96
15495931--15495975	11	4.4	11	75	16	51	68	8	0	22	1.16
15496218--15496338	7	16.9	7	73	13	63	67	0	1	30	1.00
15496260--15496334	4	19.5	4	77	13	52	68	0	1	30	0.98
15496222--15496326	44	2.4	43	79	10	115	65	0	1	32	1.03
15496268--15496334	29	2.3	29	82	5	73	68	0	0	31	0.90
15501535--15501592	30	1.9	30	85	0	80	51	17	20	10	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15505741--15505778	19	2.0	19	90	10	60	65	2	5	26	1.27
15514009--15514070	8	7.5	8	84	12	81	20	0	0	79	0.74
15514009--15514076	17	4.0	17	85	11	95	22	1	0	76	0.87
15514009--15514076	26	2.7	26	84	15	97	22	1	0	76	0.87
15514250--15514643	41	9.5	41	79	5	357	46	17	12	22	1.82
15514236--15514649	82	5.0	81	79	6	393	46	17	12	23	1.83
15514233--15514575	167	2.1	166	82	6	417	46	18	12	22	1.83
15514258--15514606	126	2.8	124	78	10	372	46	16	13	22	1.82
15514889--15514928	20	2.0	20	85	0	53	32	20	12	35	1.90
15515090--15515235	21	6.8	21	82	7	168	39	14	8	36	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113