genome.fa.s68.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  99  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19886260--19886424	82	2.0	84	84	2	217	44	15	10	29	1.80
19890197--19890460	113	2.3	113	79	4	264	49	15	12	22	1.78
19890500--19890625	28	4.6	28	83	4	132	46	14	6	32	1.69
19890509--19890625	55	2.1	55	81	7	139	46	12	6	34	1.69
19890522--19890644	55	2.3	55	80	4	133	47	13	7	31	1.71
19894941--19894978	2	19.0	2	89	10	60	50	2	0	47	1.15
19895110--19895210	50	2.0	50	98	0	193	25	20	15	37	1.93
19897269--19897294	2	13.0	2	100	0	52	50	0	50	0	1.00
19899938--19899969	10	3.1	11	91	8	50	65	0	6	28	1.16
19900586--19900652	30	2.2	29	80	15	73	65	1	4	28	1.21
19906044--19906115	31	2.3	31	82	0	90	30	22	19	27	1.98
19908532--19908778	63	3.9	64	72	9	191	47	14	16	21	1.81
19908698--19908862	65	2.5	65	79	3	163	45	16	18	20	1.86
19913696--19913727	16	1.9	17	93	6	57	12	37	0	50	1.41
19922759--19922855	32	3.1	32	83	5	117	25	20	6	47	1.73
19923600--19923655	16	3.4	17	69	18	55	21	17	5	55	1.62
19923555--19923650	32	3.0	32	87	0	138	27	15	5	52	1.64
19924973--19925008	19	1.9	18	88	5	54	13	5	5	75	1.17
19926068--19926109	21	2.0	21	100	0	84	28	9	28	33	1.88
19928991--19929065	37	2.0	37	87	5	107	37	10	13	38	1.79
19929158--19929195	18	2.1	19	90	5	60	15	0	2	81	0.80
19929159--19929209	16	3.2	16	80	5	59	15	1	1	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19929451--19929501	21	2.5	20	87	9	77	76	5	1	15	1.07
19929451--19929501	11	4.6	11	78	7	50	76	5	1	15	1.07
19929463--19929509	21	2.2	21	88	7	69	78	2	2	17	0.94
19929914--19929960	21	2.2	21	100	0	94	57	19	0	23	1.41
19930396--19930459	15	4.1	16	74	8	60	73	4	0	21	1.01
19930431--19930565	3	48.0	3	71	17	94	61	4	1	32	1.25
19930508--19930555	16	3.1	16	82	11	64	68	0	0	31	0.90
19930729--19930827	37	2.7	37	75	0	108	39	9	27	24	1.85
19931212--19931469	121	2.1	121	80	4	270	48	11	18	21	1.80
19931255--19931544	121	2.4	122	82	1	332	47	10	18	23	1.80
19932411--19932751	58	5.7	58	80	10	348	36	13	7	42	1.72
19933636--19933793	44	3.7	41	73	13	126	70	1	3	24	1.14
19933624--19933708	24	3.6	22	77	17	91	71	1	3	23	1.08
19933678--19933758	26	3.3	23	66	17	56	72	1	4	20	1.10
19933714--19933813	12	8.0	12	69	15	53	72	2	3	23	1.09
19934212--19934247	10	3.7	10	85	7	56	0	13	0	86	0.58
19934214--19934267	9	5.9	9	82	8	65	3	11	0	85	0.73
19934212--19934259	19	2.5	19	86	0	69	2	14	0	83	0.74
19934575--19934625	22	2.5	19	84	12	66	0	13	7	78	0.96
19938857--19938910	7	7.7	7	83	8	65	20	1	0	77	0.86
19939171--19939204	15	2.3	15	90	10	52	82	2	2	11	0.89
19939181--19939219	20	2.0	20	89	0	60	82	0	5	12	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19940084--19940110	3	9.0	3	100	0	54	66	0	0	33	0.92
19940176--19940222	16	2.9	16	81	15	53	68	2	0	29	1.02
19940176--19940227	26	2.0	26	85	7	70	69	1	0	28	0.99
19941428--19941495	21	3.1	21	72	14	66	36	13	8	41	1.75
19941415--19941525	44	2.5	44	86	1	161	31	13	13	41	1.83
19941501--19941545	22	2.0	22	86	0	63	28	6	22	42	1.79
19941597--19941648	22	2.3	23	74	9	54	26	7	15	50	1.71
19941620--19941775	81	1.9	81	84	7	210	35	7	11	45	1.68
19941738--19941875	21	6.3	21	67	9	55	31	8	13	46	1.73
19941950--19942007	17	3.4	17	73	4	55	29	17	12	41	1.85
19942103--19942141	21	1.9	20	84	5	51	33	15	10	41	1.81
19942314--19942629	84	3.8	84	79	7	320	31	12	17	39	1.86
19942328--19942629	168	1.8	167	83	3	401	31	12	17	39	1.87
19943815--19944125	102	3.1	100	82	3	349	44	8	9	37	1.68
19948975--19949021	21	2.3	20	88	3	67	78	2	17	2	0.94
19950703--19950860	46	3.5	46	81	2	176	32	8	16	42	1.79
19950703--19950884	46	4.0	46	80	7	160	32	7	16	43	1.76
19951073--19951130	21	2.7	21	81	2	62	31	10	6	51	1.62
19951221--19951426	17	12.3	17	69	14	88	31	18	13	36	1.89
19951709--19951969	82	3.2	80	78	10	231	32	17	14	35	1.90
19952974--19953281	100	3.1	95	82	7	373	43	6	11	38	1.66
19952974--19953281	98	3.1	98	81	7	365	43	6	11	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19955607--19955794	101	1.9	101	83	4	245	55	9	14	19	1.66
19956154--19956207	28	1.9	28	88	0	81	46	14	9	29	1.76
19961266--19961296	14	2.2	14	94	0	53	12	3	3	80	0.95
19962320--19962601	113	2.5	112	75	8	279	51	13	12	23	1.75
19962640--19962776	56	2.5	55	81	7	152	47	13	8	31	1.71
19962640--19962776	28	5.0	27	76	12	118	47	13	8	31	1.71
19963765--19963803	17	2.3	16	87	12	60	38	0	0	61	0.96
19963763--19963807	15	2.9	16	84	12	58	37	0	0	62	0.96
19968796--19968822	12	2.2	12	100	0	54	55	14	7	22	1.64
19974042--19974084	22	2.0	22	90	0	68	46	2	2	48	1.27
19974582--19974627	20	2.3	19	85	7	56	36	13	10	39	1.79
19974938--19974986	26	1.9	25	88	12	73	40	2	0	57	1.10
19975680--19975757	34	2.3	35	88	4	122	50	0	7	42	1.31
19979407--19979756	194	1.8	190	84	4	479	42	7	3	46	1.49
19981383--19981458	33	2.2	36	86	6	104	27	3	2	65	1.23
19981360--19981463	55	1.9	54	80	5	120	26	4	2	65	1.27
19982201--19982226	3	8.7	3	100	0	52	30	0	0	69	0.89
19982292--19982513	59	3.7	59	80	10	231	41	4	13	40	1.63
19992964--19993000	12	3.3	12	78	21	53	81	0	8	10	0.89
19992955--19992996	9	4.8	9	77	16	52	80	0	9	9	0.89
19992955--19993025	26	2.7	28	81	16	89	77	0	12	9	0.99
19994022--19994207	83	2.3	81	85	6	241	27	13	19	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19994023--19994295	40	6.6	40	76	12	230	26	14	20	38	1.91
19994022--19994245	83	2.7	82	82	6	229	27	14	19	38	1.90
19994023--19994308	123	2.3	122	80	8	326	26	15	20	38	1.91
19994260--19994368	45	2.5	42	79	4	128	22	14	21	41	1.89
19994594--19994649	22	2.5	22	85	5	69	30	7	1	60	1.33
19994626--19994699	35	2.1	35	85	2	96	31	5	1	62	1.26
19995480--19995517	19	2.0	19	85	10	51	31	0	5	63	1.17
19995571--19995903	60	5.7	58	83	8	399	42	5	12	39	1.65
19995570--19995903	118	2.9	115	87	7	435	42	5	12	39	1.65
19995959--19996011	21	2.6	21	71	14	56	9	7	7	75	1.19
19996669--19996701	17	1.9	17	93	0	57	48	6	0	45	1.27
19996763--19996813	21	2.4	22	81	15	63	35	7	0	56	1.28
20004177--20004210	15	2.3	15	89	0	50	58	17	8	14	1.61
20005184--20005328	63	2.3	63	82	5	179	37	14	9	37	1.79
20005165--20005328	63	2.6	62	79	5	170	35	15	10	37	1.82
20005288--20005524	61	3.9	61	75	6	201	38	13	11	36	1.82
20005165--20005455	62	4.7	61	71	13	218	35	14	11	38	1.82
20005165--20005519	123	2.9	124	76	5	317	36	14	12	37	1.83
20007852--20007885	17	1.9	18	88	5	52	55	0	29	14	1.40
20009901--20009940	20	2.0	21	85	5	55	17	7	20	55	1.66
20009938--20009968	15	2.1	15	94	5	55	29	0	6	64	1.18
20013191--20013224	17	2.0	17	100	0	68	23	35	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20013944--20014093	51	3.0	49	84	6	183	35	10	10	44	1.73
20014419--20014452	16	2.2	15	89	5	50	52	0	0	47	1.00
20014830--20014874	3	15.0	3	100	0	90	66	0	0	33	0.92
20016528--20016568	19	2.2	19	86	0	55	21	4	4	68	1.28
20016731--20016816	44	2.0	43	83	4	109	44	8	6	40	1.61
20018501--20018545	17	2.5	17	78	7	54	37	13	6	42	1.70
20018617--20018673	18	3.2	18	76	0	51	49	14	5	31	1.65
20023945--20024024	27	3.1	26	80	10	92	21	37	11	30	1.88
20024551--20024609	31	1.9	31	100	0	118	38	22	6	32	1.80
20028238--20028280	21	2.0	21	95	0	77	25	11	23	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113