genome.fa.s68.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  30  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9727103--9727401	83	3.5	83	80	5	298	26	14	19	39	1.90
9727645--9727686	12	3.6	12	77	6	50	19	0	2	78	0.86
9727667--9727795	31	4.5	28	73	18	99	31	4	0	63	1.20
9728663--9728706	4	11.8	4	90	9	51	29	0	0	70	0.88
9728724--9728764	6	7.0	6	86	8	50	17	4	0	78	0.93
9728724--9728764	17	2.4	17	88	12	57	17	4	0	78	0.93
9728784--9728916	57	2.3	58	97	1	250	39	6	12	42	1.67
9729716--9729751	15	2.4	15	100	0	72	38	5	11	44	1.63
9729909--9729949	21	2.0	21	85	0	55	43	4	14	36	1.67
9731415--9731479	14	4.7	14	77	11	55	20	3	1	75	1.02
9731428--9731479	21	2.6	19	75	19	52	21	3	1	73	1.10
9731681--9731714	18	1.9	18	88	5	52	14	2	5	76	1.09
9731685--9731732	24	1.9	26	87	8	73	14	6	2	77	1.06
9732040--9732098	23	2.4	23	75	16	57	50	1	0	47	1.11
9733877--9733949	6	12.3	6	72	13	53	16	4	0	79	0.88
9733872--9733918	18	2.5	18	86	13	60	12	8	0	78	0.95
9733889--9733946	8	6.9	8	77	13	55	15	3	0	81	0.83
9733872--9733943	10	7.4	9	79	16	65	15	5	0	79	0.91
9733982--9734265	59	4.7	59	87	7	382	46	7	12	33	1.71
9733982--9734265	120	2.4	118	88	6	410	46	7	12	33	1.71
9743026--9743455	59	7.3	59	85	6	568	46	7	12	34	1.69
9743026--9743455	120	3.6	116	86	7	571	46	7	12	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9743026--9743453	179	2.4	175	87	6	621	46	7	12	34	1.69
9746745--9746930	98	1.9	98	95	0	336	38	10	9	41	1.73
9748861--9748925	12	5.4	13	77	22	63	33	0	0	66	0.92
9748869--9748924	18	3.1	17	80	14	60	32	0	0	67	0.91
9748913--9748960	19	2.5	19	90	6	71	45	0	2	52	1.12
9750192--9750227	17	2.1	17	89	0	54	69	2	25	2	1.15
9753413--9753468	23	2.6	23	81	18	75	44	1	1	51	1.22
9754543--9754593	25	2.1	25	92	7	88	11	7	0	80	0.90
9754677--9754714	17	2.3	17	90	4	60	63	0	2	34	1.09
9754950--9754990	21	1.9	21	85	14	57	21	9	0	68	1.18
9754950--9754991	22	1.9	23	85	9	61	21	9	0	69	1.17
9757733--9758125	199	2.0	199	84	6	519	43	7	5	43	1.55
9758428--9758485	14	4.2	14	78	8	57	20	3	1	74	1.06
9758434--9758485	21	2.6	19	75	19	52	21	3	1	73	1.10
9758689--9758722	18	1.9	18	88	5	52	14	2	5	76	1.09
9758693--9758740	24	1.9	26	87	8	73	14	6	2	77	1.06
9761683--9761977	59	4.8	58	84	12	355	45	8	12	33	1.73
9761690--9761977	60	4.7	58	85	10	382	45	8	13	33	1.73
9765847--9765902	23	2.4	24	85	5	71	75	0	17	7	1.03
9765844--9765897	16	3.5	15	74	20	58	74	0	16	9	1.07
9767131--9767828	41	16.9	40	89	5	897	22	16	22	38	1.93
9767131--9767828	124	5.6	121	86	6	910	22	16	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9767150--9767828	83	8.2	82	90	4	978	22	16	22	37	1.93
9767837--9767909	7	10.6	7	88	5	105	87	10	0	1	0.60
9767837--9767937	28	3.7	27	85	6	114	84	8	0	6	0.79
9767837--9767909	1	73.0	1	75	0	65	87	10	0	1	0.60
9767835--9767938	14	7.6	14	77	15	85	82	9	0	7	0.84
9768728--9768797	31	2.2	32	82	7	90	25	24	22	27	2.00
9768850--9768899	20	2.6	19	87	6	73	32	26	20	22	1.98
9768858--9768915	20	2.9	20	92	0	89	32	22	18	25	1.97
9769354--9769639	60	4.7	59	87	10	402	45	8	12	34	1.72
9771993--9772039	3	15.7	3	100	0	94	31	0	0	68	0.90
9777146--9777329	98	1.9	98	94	0	323	40	9	7	42	1.65
9779269--9779333	12	5.4	13	77	22	63	33	0	0	66	0.92
9779277--9779332	18	3.1	17	80	14	60	32	0	0	67	0.91
9779325--9779355	16	2.0	16	93	6	55	51	0	0	48	1.00
9779316--9779365	21	2.4	21	83	12	59	48	0	0	52	1.00
9781942--9782027	42	2.1	41	82	6	102	45	8	9	37	1.66
9788148--9788238	5	17.6	5	68	18	53	75	2	6	15	1.10
9788143--9788225	31	2.6	31	79	11	80	75	2	8	13	1.12
9788148--9788225	25	2.9	27	78	14	74	76	2	7	12	1.09
9788247--9788293	4	11.8	4	80	8	51	76	6	0	17	0.98
9788220--9788293	32	2.3	32	81	6	78	70	6	0	22	1.11
9788250--9788293	13	3.7	12	82	8	54	77	6	0	15	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9789195--9789335	6	22.7	6	71	25	59	65	3	0	30	1.15
9789187--9789335	24	6.8	22	70	22	82	66	3	0	29	1.12
9789528--9789582	1	55.0	1	77	0	56	7	0	3	89	0.60
9789528--9789579	9	5.7	9	82	13	70	7	0	3	88	0.62
9789528--9789583	20	2.8	19	89	5	76	8	0	3	87	0.65
9789589--9789884	43	7.0	41	88	5	387	36	21	17	24	1.95
9789589--9789884	42	7.0	41	88	4	412	36	21	17	24	1.95
9790420--9790478	22	2.7	22	81	7	66	35	16	8	38	1.80
9791555--9791594	20	2.1	19	86	13	55	7	10	0	82	0.84
9791570--9791603	16	2.2	15	89	5	50	8	11	0	79	0.94
9791928--9791963	11	3.3	11	100	0	72	0	8	0	91	0.41
9795623--9795707	9	8.8	9	71	19	55	77	1	7	14	1.03
9795627--9795666	21	1.9	21	94	0	71	77	0	7	15	0.98
9795633--9795709	11	6.9	11	69	11	50	77	1	6	14	1.02
9795628--9795689	11	6.0	10	74	18	56	80	1	4	12	0.94
9795727--9795769	4	10.8	4	80	9	52	74	4	0	20	1.00
9795734--9795781	21	2.3	22	86	10	66	77	6	0	16	0.97
9796621--9796661	20	2.0	21	90	4	66	65	4	9	19	1.40
9796731--9796859	3	42.3	3	68	28	53	65	3	1	30	1.17
9796724--9796808	23	3.8	22	76	15	70	68	2	1	28	1.09
9797394--9797429	3	12.0	3	100	0	72	33	0	0	66	0.92
9799163--9799187	12	2.1	12	100	0	50	80	0	12	8	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9805601--9805634	3	11.7	3	93	6	61	35	0	0	64	0.94
9805961--9806008	17	2.7	17	83	6	60	75	10	8	6	1.20
9805928--9806009	37	2.1	38	82	6	94	74	9	8	7	1.22
9806779--9806815	16	2.5	15	91	8	58	78	0	0	21	0.75
9807010--9807038	12	2.4	12	100	0	58	72	0	13	13	1.13
9807161--9807219	31	1.9	31	82	6	75	59	1	5	33	1.29
9808675--9808948	144	2.0	135	86	8	383	30	18	13	37	1.89
9809225--9809258	2	17.0	2	100	0	68	50	0	0	50	1.00
9809982--9810023	22	1.9	22	85	0	57	59	4	2	33	1.31
9810546--9810622	6	12.2	6	85	9	73	24	1	1	72	1.00
9810543--9810622	15	5.5	15	75	11	69	25	1	1	72	0.99
9810576--9810619	3	14.7	3	90	0	70	27	0	0	72	0.85
9812287--9812316	14	2.1	15	93	6	53	36	6	0	56	1.26
9813393--9813417	3	8.3	3	100	0	50	32	0	0	68	0.90
9814566--9814625	21	3.0	21	76	7	54	48	1	1	48	1.21
9817644--9817680	14	2.4	16	82	8	51	59	0	0	40	0.97
9818063--9818293	43	5.3	43	75	9	157	32	12	10	44	1.77
9818063--9818292	44	5.3	44	76	7	186	32	13	10	43	1.77
9818045--9818252	86	2.4	85	79	4	202	32	12	11	43	1.78
9818579--9818620	22	1.9	22	90	9	68	7	23	0	69	1.13
9818847--9818898	27	1.9	27	88	0	77	32	5	7	53	1.53
9818868--9818971	30	3.5	30	70	11	88	36	3	5	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9819413--9819482	10	7.2	10	81	10	74	25	12	8	52	1.67
9819395--9819482	39	2.3	39	86	2	124	27	11	9	52	1.67
9819395--9819482	19	4.6	19	75	10	63	27	11	9	52	1.67
9819418--9819482	29	2.2	29	84	10	96	26	12	7	53	1.64
9820820--9820863	19	2.3	21	74	22	51	13	6	2	77	1.07
9820994--9821496	236	2.1	242	83	8	627	49	6	8	35	1.60
9821271--9821318	20	2.4	20	79	6	53	43	6	6	43	1.54
9823699--9823758	27	2.2	27	93	0	102	38	23	10	28	1.87
9828054--9828136	5	16.2	5	73	18	55	73	2	1	22	1.02
9828054--9828136	18	4.6	17	81	13	78	73	2	1	22	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113