genome.fa.s68.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  90  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18708268--18708298	16	1.9	16	100	0	62	67	0	12	19	1.22
18708279--18708364	40	2.2	37	81	8	100	56	5	11	25	1.57
18709068--18709130	20	3.1	21	75	11	60	28	14	15	41	1.87
18713008--18713049	19	2.1	20	86	8	59	9	11	0	78	0.96
18714228--18714273	17	2.8	17	81	12	51	39	0	0	60	0.97
18715044--18715084	21	2.0	21	85	0	55	51	26	4	17	1.65
18717730--18717756	2	13.5	2	100	0	54	51	0	0	48	1.00
18720090--18720143	19	2.9	19	81	5	58	29	11	0	59	1.32
18720332--18720389	3	20.0	3	81	13	68	65	3	0	31	1.09
18720385--18720441	18	2.9	19	80	15	55	73	8	3	14	1.20
18720391--18720452	18	3.3	18	82	11	63	75	6	6	11	1.17
18721563--18721764	40	5.0	40	85	2	190	42	16	12	28	1.85
18721593--18721777	40	4.6	40	88	1	226	42	16	11	29	1.83
18721593--18722107	80	6.6	80	74	11	347	41	15	13	29	1.85
18721777--18722095	39	8.0	40	80	5	308	40	14	14	30	1.86
18721669--18721884	107	2.0	108	88	2	319	43	14	10	31	1.79
18721778--18722107	40	8.3	38	79	7	266	41	14	14	29	1.86
18721592--18721963	187	2.0	189	86	3	518	43	15	12	28	1.83
18722072--18722140	33	2.1	33	83	0	84	39	18	11	30	1.87
18722227--18722322	41	2.4	39	79	8	95	44	10	12	32	1.76
18734682--18734721	16	2.5	16	91	0	62	40	22	2	35	1.68
18736556--18736593	19	2.0	20	94	5	69	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18736812--18736850	14	2.8	13	84	7	51	17	2	2	76	1.01
18737053--18737120	27	2.4	29	83	11	79	72	8	0	19	1.11
18737098--18737141	20	2.2	20	92	4	72	77	9	0	13	0.99
18737099--18737146	25	1.9	25	86	0	69	79	8	0	12	0.94
18737109--18737147	20	2.0	20	89	0	60	82	7	0	10	0.86
18737110--18737153	20	2.2	20	83	0	52	86	4	0	9	0.70
18739910--18740140	119	1.9	119	87	0	338	35	19	12	32	1.88
18740874--18740917	22	2.1	21	83	8	54	72	9	15	2	1.19
18741285--18741327	22	1.9	22	85	4	59	27	9	9	53	1.63
18749616--18749737	52	2.3	52	85	0	172	40	8	21	29	1.82
18750294--18750373	25	3.2	24	75	10	72	37	6	36	20	1.78
18750280--18750391	50	2.3	48	84	6	136	34	8	34	22	1.84
18750870--18751038	84	2.0	84	97	0	320	27	5	34	32	1.81
18755645--18755721	12	6.4	12	70	10	50	25	2	0	71	0.99
18755653--18755779	28	4.5	28	70	16	84	30	4	0	64	1.14
18755662--18755862	49	4.2	46	74	18	144	29	4	0	65	1.16
18755765--18755860	18	5.8	17	71	15	60	27	4	1	67	1.15
18755652--18755859	23	8.5	24	71	17	124	28	4	0	66	1.14
18755645--18755867	17	13.1	16	65	16	60	28	4	0	66	1.15
18756127--18756169	22	2.0	21	86	4	59	25	0	16	58	1.38
18756744--18756786	22	2.0	22	86	9	61	16	4	0	79	0.90
18756792--18757033	59	4.1	59	79	10	237	44	5	11	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18768470--18768504	18	1.9	18	88	0	52	14	0	22	62	1.31
18768989--18769069	13	6.6	11	75	20	65	11	2	3	82	0.89
18768989--18769062	12	6.0	12	74	12	51	9	2	4	83	0.86
18768994--18769069	16	4.7	17	73	14	72	10	2	3	82	0.89
18768989--18769069	25	3.3	23	80	16	76	11	2	3	82	0.89
18770204--18770252	24	2.0	24	96	0	89	61	8	14	16	1.56
18772357--18772393	19	1.9	19	88	0	56	78	5	0	16	0.93
18772354--18772450	14	6.7	14	71	16	65	77	3	3	16	1.03
18772353--18772440	5	18.0	5	71	15	51	76	3	2	18	1.04
18772354--18772440	24	3.7	25	74	21	73	77	3	2	17	1.02
18772387--18772427	21	2.0	21	85	0	55	73	2	4	19	1.13
18772354--18772452	24	4.2	23	72	19	69	77	3	3	16	1.01
18773258--18773380	3	41.3	3	78	9	128	61	3	2	32	1.25
18773615--18773851	121	2.0	118	83	2	294	47	14	20	17	1.83
18774152--18774339	69	2.8	69	82	3	220	37	11	15	34	1.85
18774160--18774355	68	2.9	68	82	2	214	37	13	15	33	1.87
18775298--18775343	14	2.8	17	75	18	53	2	6	6	84	0.84
18775295--18775345	25	2.0	25	85	7	68	1	5	7	84	0.85
18779301--18779378	31	2.6	30	80	8	86	51	20	3	24	1.64
18781178--18781505	163	2.0	163	94	1	577	37	15	13	32	1.87
18792032--18792155	3	41.3	3	75	10	112	61	3	3	32	1.28
18793065--18793109	19	2.5	18	89	7	65	42	4	4	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18793446--18793479	16	2.1	16	88	0	50	17	5	23	52	1.66
18797596--18797722	55	2.3	55	83	5	150	25	24	9	40	1.85
18798189--18798327	3	48.3	3	75	16	116	34	1	3	60	1.23
18798815--18798841	13	2.1	13	100	0	54	22	7	14	55	1.64
18799179--18799250	7	11.5	6	79	18	60	18	1	1	79	0.88
18799189--18799231	21	2.1	20	91	4	68	20	0	2	76	0.89
18800372--18800432	24	2.5	24	82	15	72	75	4	1	18	1.06
18800372--18800448	26	3.1	25	80	14	81	76	5	1	16	1.03
18800658--18800756	51	1.9	52	85	2	137	42	15	15	27	1.86
18800785--18800809	13	1.9	13	100	0	50	64	16	0	20	1.30
18801279--18801320	3	14.0	3	100	0	84	66	0	0	33	0.92
18801388--18801446	28	2.1	29	81	9	68	57	11	3	27	1.50
18801963--18802044	41	2.0	41	90	0	128	46	12	13	28	1.79
18802639--18802664	5	5.2	5	100	0	52	42	0	0	57	0.98
18804266--18804365	34	2.9	34	81	8	114	40	9	11	40	1.72
18804273--18804379	34	3.2	33	76	10	101	39	9	12	39	1.75
18810350--18810391	21	2.0	22	86	9	61	21	4	4	69	1.26
18810405--18810456	12	4.3	12	76	13	54	57	0	1	40	1.10
18810641--18810683	22	2.0	21	86	4	59	34	0	0	65	0.93
18810645--18810691	24	2.0	22	84	8	58	38	0	2	59	1.09
18811349--18811393	21	2.1	21	100	0	90	55	0	15	28	1.41
18811553--18811602	25	2.0	25	84	0	64	42	2	4	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18811760--18811818	26	2.3	27	85	8	79	49	1	0	49	1.11
18816003--18816030	2	14.0	2	100	0	56	50	0	0	50	1.00
18817911--18817971	25	2.4	25	86	8	79	50	4	0	44	1.23
18819613--18819661	25	2.0	25	95	0	89	51	10	0	38	1.36
18833805--18833856	27	1.9	27	96	0	95	13	36	3	46	1.62
18842691--18842728	19	2.0	19	94	0	67	39	21	23	15	1.92
18853159--18853233	27	2.7	29	80	13	86	37	1	4	57	1.26
18853235--18853283	13	3.8	13	86	0	62	28	0	0	71	0.86
18853237--18853300	13	5.0	13	79	7	51	32	0	0	67	0.91
18858875--18858918	23	1.9	23	85	0	61	63	20	4	11	1.44
18859207--18859265	5	12.0	5	73	10	50	71	1	3	23	1.11
18860894--18860928	18	1.9	18	88	0	52	57	0	0	42	0.99
18862565--18862624	30	2.0	30	93	0	102	43	6	10	40	1.64
18862567--18862632	30	2.2	30	88	0	96	46	6	7	39	1.57
18865103--18865161	27	2.1	27	84	9	75	35	1	3	59	1.24
18867414--18867444	13	2.3	14	94	5	55	77	0	0	22	0.77
18868475--18868530	29	2.0	29	82	10	71	32	0	8	58	1.29
18869551--18869599	3	16.3	3	100	0	98	67	0	0	32	0.91
18871650--18871683	2	17.5	2	93	6	61	47	0	0	52	1.00
18872610--18873136	263	2.0	263	100	0	1054	29	12	15	41	1.84
18881226--18881260	16	2.2	16	100	0	70	71	11	5	11	1.30
18886812--18886881	36	2.0	35	86	8	97	51	2	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18886809--18886868	17	3.5	17	68	18	52	46	3	0	50	1.18
18887125--18887163	19	2.1	19	90	0	60	23	23	5	48	1.70
18888135--18888170	18	2.0	18	88	0	54	38	11	0	50	1.38
18888316--18888381	29	2.3	29	78	7	71	34	7	7	50	1.59
18896816--18896877	23	2.7	26	72	23	66	40	0	0	59	0.97
18897203--18897264	27	2.3	28	86	10	85	48	0	1	50	1.10
18897345--18897434	45	2.0	45	80	8	103	48	1	0	50	1.08
18897918--18897975	29	2.1	28	84	9	75	41	3	1	53	1.28
18899946--18900003	27	2.1	27	90	0	89	10	18	6	63	1.47
18905286--18905310	8	3.1	8	100	0	50	40	0	36	24	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113