genome.fa.s68.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  36  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10619076--10619116	3	14.0	3	85	14	59	68	2	0	29	1.03
10619374--10619411	17	2.3	17	86	4	51	52	0	0	47	1.00
10621679--10621715	20	1.9	18	89	10	56	48	0	2	48	1.15
10622109--10622148	17	2.4	17	86	0	62	57	0	2	40	1.12
10622098--10622162	21	3.3	19	75	20	55	50	1	1	46	1.20
10626255--10626294	20	2.0	20	85	0	53	50	2	2	45	1.28
10626968--10626999	16	2.0	16	93	0	55	34	0	0	65	0.93
10627423--10627492	30	2.3	32	80	7	83	55	1	0	42	1.08
10628451--10628494	21	2.2	21	84	8	56	70	0	2	27	0.99
10629174--10629243	29	2.4	29	80	2	88	45	1	1	51	1.18
10629909--10629944	2	18.0	2	100	0	72	50	0	0	50	1.00
10631582--10631677	39	2.4	40	85	3	140	28	4	8	59	1.45
10633941--10634092	79	1.9	79	91	0	250	28	18	12	40	1.87
10637632--10637667	14	2.5	15	90	4	56	47	0	0	52	1.00
10649783--10649808	9	2.9	9	100	0	52	0	11	30	57	1.34
10655963--10656008	14	3.2	14	84	6	65	47	0	2	50	1.13
10657060--10657106	23	2.0	25	87	8	71	31	0	4	63	1.13
10657075--10657119	23	2.0	23	82	8	56	37	0	4	57	1.19
10669669--10669700	12	2.7	12	95	0	55	18	31	15	34	1.93
10672086--10672151	29	2.2	28	80	15	71	48	0	4	46	1.22
10672098--10672157	29	2.0	29	87	9	86	53	0	1	45	1.10
10672671--10672747	9	8.7	9	73	13	54	63	2	1	32	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10672663--10672733	35	2.0	36	89	5	110	64	4	0	30	1.12
10672657--10672859	109	1.9	109	80	10	245	60	5	2	31	1.33
10672987--10673037	20	2.6	19	78	6	66	27	3	3	64	1.28
10673056--10673094	18	2.1	19	90	4	62	20	2	0	76	0.90
10673389--10673444	26	2.3	24	81	9	60	12	5	7	75	1.18
10673435--10673479	20	2.4	19	85	14	58	6	6	13	73	1.24
10673438--10673487	17	2.9	17	78	3	55	8	8	16	68	1.38
10673884--10673917	17	1.9	18	88	5	52	32	2	2	61	1.26
10673939--10673974	19	1.9	19	88	5	56	36	2	5	55	1.38
10673992--10674029	18	2.1	19	90	5	60	28	0	2	68	1.03
10674034--10674096	19	3.2	20	76	10	60	30	0	4	65	1.13
10675096--10675122	2	13.5	2	100	0	54	0	48	0	51	1.00
10676911--10676935	4	6.2	4	100	0	50	24	24	0	52	1.48
10678428--10678495	19	3.4	19	69	15	64	39	8	16	35	1.79
10678415--10678495	42	1.9	42	100	0	162	38	9	17	34	1.83
10678415--10678480	23	3.0	23	65	17	68	39	10	16	33	1.83
10681468--10681624	52	3.0	52	83	5	192	40	8	25	25	1.84
10682163--10682210	25	2.0	24	83	4	60	47	6	25	20	1.73
10682291--10682326	18	2.0	18	89	10	56	38	11	27	22	1.88
10682537--10682693	52	3.0	52	82	7	185	40	8	25	25	1.84
10687059--10687124	29	2.3	28	76	7	71	54	0	4	40	1.21
10687207--10687275	29	2.4	29	85	4	97	55	2	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687192--10687275	29	2.8	30	80	8	91	55	3	0	40	1.17
10687224--10687310	31	2.9	30	80	13	90	49	3	0	47	1.18
10687273--10687322	24	2.2	23	80	13	59	52	4	0	44	1.20
10687807--10687846	18	2.3	18	86	4	55	27	0	0	72	0.85
10690926--10690983	28	2.1	28	100	0	116	44	13	17	24	1.85
10690930--10690997	28	2.4	28	87	0	82	44	13	20	22	1.86
10694592--10694623	2	16.0	2	100	0	64	50	0	0	50	1.00
10694969--10695009	11	3.8	11	87	6	66	21	0	26	51	1.48
10694968--10695007	21	1.9	21	100	0	80	25	0	25	50	1.50
10695034--10695188	53	3.0	52	80	3	170	41	9	22	26	1.83
10696925--10697071	52	2.8	52	83	6	174	27	24	8	40	1.83
10697106--10697147	11	3.8	11	93	0	75	52	30	0	16	1.44
10699494--10699538	23	2.0	23	82	8	56	17	51	2	28	1.58
10703553--10703584	14	2.3	14	100	0	64	31	12	9	46	1.73
10703708--10703737	14	2.1	15	93	6	53	0	10	0	90	0.47
10704160--10704184	3	8.3	3	100	0	50	32	0	0	68	0.90
10705071--10705116	23	2.0	22	84	12	58	17	0	4	78	0.91
10705211--10705245	18	2.0	17	94	5	61	31	5	11	51	1.61
10711048--10711120	22	3.3	21	70	12	56	35	12	9	42	1.75
10711071--10711119	23	2.1	24	84	3	64	36	10	8	44	1.68
10711048--10711174	45	2.7	45	80	9	130	33	12	13	40	1.82
10711330--10711376	19	2.6	18	80	6	67	27	8	14	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10711409--10711447	18	2.1	19	90	9	62	43	12	5	38	1.65
10712010--10712188	43	4.2	43	80	5	182	25	13	14	45	1.82
10712010--10712188	86	2.1	86	82	4	209	25	13	14	45	1.82
10712450--10712488	3	13.3	3	94	5	71	30	0	0	69	0.89
10725305--10725385	28	2.8	29	81	10	96	55	3	0	40	1.17
10725319--10725417	28	3.5	28	81	10	89	51	3	0	45	1.16
10725919--10725955	17	2.2	17	90	0	56	27	0	0	72	0.84
10729044--10729101	28	2.1	28	100	0	116	44	13	17	24	1.85
10729048--10729115	28	2.4	28	87	0	82	44	13	20	22	1.86
10734110--10734384	59	4.7	57	88	8	403	35	14	7	43	1.73
10734485--10734522	20	1.9	20	94	0	67	81	5	7	5	0.98
10734851--10734889	19	2.0	20	95	5	71	25	20	25	28	1.99
10734862--10734920	30	1.9	31	82	3	75	18	25	30	25	1.98
10734911--10734958	19	2.5	19	82	0	60	22	27	29	20	1.99
10734933--10734991	31	1.9	31	89	6	93	27	22	23	27	1.99
10735779--10735844	1	66.0	1	78	0	60	0	0	12	87	0.53
10735771--10735843	8	8.9	8	84	11	94	0	0	13	86	0.58
10735771--10735843	17	4.4	17	87	3	103	0	0	13	86	0.58
10735771--10735844	9	8.7	9	85	11	102	0	0	13	86	0.57
10735851--10736432	42	14.0	41	87	8	797	37	21	17	22	1.94
10735851--10736432	83	7.0	82	87	9	815	37	21	17	22	1.94
10737675--10737730	18	3.1	18	85	14	64	3	16	0	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10737664--10737740	28	3.0	25	83	16	97	5	15	0	79	0.91
10737694--10737741	14	3.4	14	85	11	62	4	10	0	85	0.73
10737683--10737730	9	5.3	9	80	7	53	2	14	0	83	0.74
10737666--10737741	13	5.3	14	72	15	66	5	14	0	80	0.88
10739958--10739996	16	2.4	16	82	0	51	35	0	0	64	0.94
10739951--10739999	12	3.8	13	79	20	50	36	0	0	63	0.95
10739965--10740000	18	2.1	17	89	5	54	36	0	0	63	0.94
10742020--10742233	57	3.7	57	91	4	358	35	13	7	43	1.71
10742022--10742242	115	1.9	116	98	0	426	35	13	6	44	1.70
10742334--10742371	20	1.9	20	94	0	67	81	5	7	5	0.98
10742382--10742414	12	2.8	12	100	0	66	6	33	45	15	1.70
10742700--10742745	20	2.3	20	92	3	76	23	21	28	26	1.99
10742718--10742776	30	1.9	31	82	3	75	18	25	30	25	1.98
10742787--10742856	31	2.3	31	85	12	99	24	21	24	30	1.99
10746072--10746116	23	2.0	23	82	8	56	17	51	2	28	1.58
10750703--10750747	3	15.0	3	100	0	90	33	0	0	66	0.92
10751616--10751655	16	2.5	16	87	0	53	7	0	7	85	0.76
10752952--10752980	15	1.9	15	100	0	58	58	0	20	20	1.39
10753474--10753505	16	2.0	16	100	0	64	37	31	6	25	1.81
10756368--10756438	14	4.7	14	80	16	63	83	1	14	1	0.79
10756375--10756428	10	5.3	10	82	8	65	87	0	12	0	0.56
10756368--10756438	12	6.2	12	84	11	87	83	1	14	1	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10756368--10756438	23	3.1	23	80	11	83	83	1	14	1	0.79
10757733--10757781	23	2.1	23	84	3	62	36	10	8	44	1.68
10757785--10757824	21	1.9	21	84	0	53	27	12	17	42	1.85
10758685--10758865	43	4.2	44	79	6	158	27	12	13	46	1.79
10768225--10768281	29	2.0	29	86	6	80	36	5	1	56	1.32
10768728--10768761	6	5.7	6	89	10	52	17	0	0	82	0.67
10769619--10769655	18	2.1	18	89	0	56	27	13	13	45	1.81
10773187--10773263	41	1.9	40	82	12	95	49	1	1	48	1.17
10775258--10775283	2	13.0	2	100	0	52	50	0	0	50	1.00
10775473--10775523	21	2.4	21	83	6	68	60	1	1	35	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113