genome.fa.s68.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  16  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5308966--5309081	56	2.1	56	83	1	144	43	16	12	26	1.84
5312834--5312876	17	2.7	15	83	16	59	51	2	0	46	1.13
5312854--5312919	23	2.8	24	81	9	64	59	0	3	37	1.13
5314660--5314787	64	2.0	65	80	14	149	46	7	6	39	1.56
5325141--5325175	13	2.6	13	90	4	52	48	5	8	37	1.58
5330548--5330828	150	1.9	150	79	3	323	25	24	13	35	1.93
5333560--5333591	16	1.9	17	93	6	57	84	3	0	12	0.74
5335032--5335092	20	3.1	20	65	11	54	50	18	14	16	1.78
5335005--5335117	39	2.9	39	89	1	165	46	20	15	17	1.83
5353342--5353369	2	14.0	2	100	0	56	0	50	0	50	1.00
5368722--5368797	29	2.6	29	81	10	100	67	2	1	28	1.12
5378319--5378349	2	15.5	2	100	0	62	48	0	51	0	1.00
5382401--5382432	2	16.0	2	100	0	64	50	0	0	50	1.00
5386308--5386334	2	13.5	2	100	0	54	48	0	0	51	1.00
5386876--5386903	2	14.0	2	100	0	56	50	0	0	50	1.00
5388544--5388596	23	2.3	23	83	6	63	47	0	1	50	1.12
5388874--5388965	45	2.0	45	87	0	130	28	16	21	33	1.95
5391617--5391674	2	29.5	2	82	3	64	46	5	3	44	1.42
5396167--5396196	15	1.9	16	93	6	53	56	0	6	36	1.26
5396895--5396921	13	2.1	13	100	0	54	40	7	7	44	1.60
5397770--5397814	14	3.2	14	80	0	63	62	0	2	35	1.08
5405240--5405266	14	1.9	14	100	0	54	7	40	29	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5414274--5414316	5	8.2	5	97	2	68	58	0	0	41	0.98
5414275--5414319	2	25.0	2	79	20	55	55	0	0	44	0.99
5414574--5414617	20	2.2	20	84	8	54	47	0	0	52	1.00
5414623--5414659	20	1.9	19	89	10	58	54	0	0	45	1.00
5414632--5414685	28	1.9	28	81	7	65	53	1	1	42	1.22
5414763--5414823	18	3.0	18	72	25	50	54	0	0	45	1.00
5421569--5421613	21	2.1	21	84	8	56	35	6	0	57	1.25
5423165--5423189	13	1.9	13	100	0	50	60	0	0	40	0.97
5423533--5423576	20	2.2	20	84	8	54	47	0	0	52	1.00
5435478--5435533	28	2.0	28	82	6	69	32	16	3	48	1.63
5436057--5436086	13	2.4	12	94	5	51	40	0	53	6	1.27
5442195--5442250	27	2.1	27	82	0	67	39	0	3	57	1.16
5442264--5442338	37	2.0	38	84	5	98	41	2	8	48	1.47
5442693--5442753	32	1.9	31	83	9	79	40	18	1	39	1.60
5442774--5442858	29	3.0	28	74	8	75	57	2	3	36	1.29
5455500--5455549	17	2.8	18	72	6	57	62	8	0	30	1.24
5455739--5455800	15	3.9	15	75	12	52	54	0	1	43	1.09
5455750--5455807	31	1.9	29	82	6	71	62	0	0	37	0.96
5456580--5456610	1	31.0	1	100	0	62	0	0	0	100	0.00
5457332--5457370	17	2.2	18	86	4	53	35	17	2	43	1.63
5457332--5457370	18	2.2	17	86	13	53	35	17	2	43	1.63
5457386--5457456	14	4.9	14	72	10	54	49	26	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5457386--5457471	43	2.0	44	81	6	104	51	29	0	19	1.48
5458763--5458808	24	1.9	24	86	0	65	80	6	6	6	1.02
5460095--5460130	19	1.9	19	94	5	65	11	0	2	86	0.68
5460170--5460199	15	2.0	15	93	0	51	0	16	0	83	0.65
5467564--5467588	9	2.8	9	100	0	50	16	0	0	84	0.63
5473153--5473179	2	13.5	2	100	0	54	51	0	0	48	1.00
5479305--5479336	3	10.7	3	93	0	55	65	0	3	31	1.08
5489643--5489690	12	4.0	12	82	15	55	83	12	4	0	0.79
5489646--5489680	18	1.9	18	88	0	52	85	11	2	0	0.69
5490351--5490397	18	2.7	17	78	15	51	21	0	6	72	1.07
5490758--5490936	14	12.2	14	66	14	58	48	28	1	21	1.60
5490916--5490967	22	2.5	20	82	14	61	48	32	0	19	1.49
5492967--5492992	13	2.0	13	100	0	52	15	0	0	84	0.62
5508292--5508341	24	2.1	23	82	14	57	64	2	4	30	1.23
5508948--5508975	12	2.3	12	100	0	56	64	0	7	28	1.20
5509566--5509629	21	3.0	21	77	15	60	34	4	0	60	1.17
5523031--5523055	2	12.5	2	100	0	50	0	48	0	52	1.00
5525064--5525096	8	4.1	8	88	11	50	75	0	0	24	0.80
5532531--5532578	24	2.0	24	88	8	71	8	16	39	35	1.79
5540478--5540512	17	2.1	17	94	0	61	74	0	2	22	0.95
5541246--5541385	74	1.9	73	85	1	190	30	24	10	35	1.89
5542899--5542931	10	3.3	10	84	16	50	81	9	0	9	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5544234--5544366	69	1.9	68	84	1	176	14	9	16	59	1.60
5558413--5558443	12	2.6	12	94	0	53	16	19	22	41	1.89
5559153--5559194	21	2.0	21	90	0	66	30	14	19	35	1.91
5563507--5563649	73	2.0	73	94	0	250	44	17	6	31	1.75
5564326--5564386	6	10.2	6	87	0	77	57	0	40	1	1.08
5564326--5564386	10	6.3	10	84	7	81	57	0	40	1	1.08
5564326--5564386	4	15.2	4	85	0	77	57	0	40	1	1.08
5566040--5566074	7	4.9	7	86	6	52	40	0	0	60	0.97
5566040--5566074	15	2.4	15	90	4	54	40	0	0	60	0.97
5566589--5566622	17	2.0	17	88	0	50	47	0	0	52	1.00
5567565--5567607	23	1.9	22	85	4	59	60	0	4	34	1.17
5575586--5575663	40	2.0	40	100	0	156	24	19	15	41	1.90
5578629--5578659	16	1.9	16	100	0	62	45	0	0	54	0.99
5578952--5578982	15	2.1	15	93	0	53	51	0	3	45	1.17
5579402--5579474	39	1.9	38	89	8	114	47	9	10	31	1.71
5589187--5589220	2	17.0	2	100	0	68	50	0	0	50	1.00
5589442--5589472	2	15.5	2	100	0	62	48	0	0	51	1.00
5596229--5596292	22	2.9	22	70	20	62	50	1	1	46	1.20
5596427--5596502	32	2.4	33	80	8	86	53	0	1	44	1.08
5603591--5603616	2	13.0	2	100	0	52	50	0	0	50	1.00
5623574--5623608	18	1.9	18	88	0	52	11	17	5	65	1.43
5634147--5634710	280	2.0	280	98	0	1101	32	16	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5636305--5636340	2	18.0	2	88	0	54	52	2	0	44	1.15
5637809--5637852	16	2.6	18	82	7	56	2	11	4	81	0.92
5652920--5652953	18	1.9	17	88	5	50	52	8	8	29	1.62
5665416--5665452	18	2.1	18	100	0	74	32	16	29	21	1.95
5669198--5669222	12	2.1	12	100	0	50	40	0	60	0	0.97
5670887--5670916	7	4.4	7	95	4	53	56	0	0	43	0.99
5672675--5672810	42	3.3	40	77	14	100	49	0	1	48	1.15
5676417--5676460	18	2.4	18	81	7	54	31	0	0	68	0.90
5680646--5680713	30	2.3	30	84	0	82	19	19	51	10	1.74
5682599--5682637	2	19.5	2	100	0	78	51	0	48	0	1.00
5685809--5685852	19	2.3	19	80	0	52	68	0	0	31	0.90
5685943--5685982	18	2.1	19	86	13	55	45	0	0	55	0.99
5686883--5686930	25	1.9	25	87	8	71	64	8	0	27	1.22
5688430--5688483	17	3.1	18	86	7	76	48	1	0	50	1.11
5688434--5688483	18	2.8	18	87	9	59	50	2	0	48	1.12
5688951--5688975	11	2.3	11	100	0	50	24	0	0	76	0.80
5689157--5689254	51	1.9	51	84	12	130	48	1	1	48	1.14
5702266--5702312	22	2.1	22	84	0	58	12	10	6	70	1.33
5704144--5704195	26	2.0	27	85	11	72	32	5	0	61	1.20
5704428--5704486	26	2.3	26	100	0	118	49	3	6	40	1.46
5704594--5704671	29	2.7	29	82	6	86	51	0	8	39	1.34
5709559--5709594	18	1.9	19	88	5	56	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5720967--5720993	3	9.0	3	100	0	54	66	0	0	33	0.92
5728394--5728499	36	3.0	36	95	2	189	26	13	16	43	1.85
5733063--5733120	19	3.2	18	76	18	66	32	15	13	37	1.87
5734487--5734527	16	2.6	16	85	14	50	34	0	7	58	1.26
5736934--5736966	2	17.0	2	93	6	59	51	0	0	48	1.00
5745344--5745376	15	2.2	15	100	0	66	69	18	6	6	1.30
5750042--5750109	31	2.2	31	91	0	109	38	5	1	54	1.34
5758633--5758658	3	8.7	3	100	0	52	69	0	0	30	0.89
5760507--5760581	29	2.7	29	78	13	70	34	1	1	62	1.12
5760504--5760565	29	2.1	29	84	6	79	32	0	1	66	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113