genome.fa.s68.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  79  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16851620--16851721	54	1.9	52	82	9	125	44	0	5	50	1.26
16851753--16851784	15	2.1	15	100	0	64	40	0	6	53	1.26
16855027--16855061	16	2.2	16	94	0	61	42	11	14	31	1.81
16858827--16859095	145	1.8	145	85	5	382	39	5	9	44	1.61
16858821--16859123	145	2.1	144	83	5	378	41	6	8	42	1.62
16859308--16859383	34	2.2	35	86	6	102	42	2	11	43	1.55
16859342--16860815	180	8.2	178	76	6	1091	39	7	10	42	1.69
16858979--16859733	395	1.9	395	81	3	912	41	7	9	41	1.66
16859341--16860815	182	8.2	179	75	8	1141	39	7	10	42	1.69
16859342--16860814	361	4.1	354	77	8	1143	39	7	10	42	1.69
16860929--16862747	180	10.2	181	77	7	1453	41	8	9	40	1.69
16860076--16861665	866	1.8	865	80	7	1913	39	7	10	42	1.68
16860935--16862747	539	3.4	531	77	8	1664	41	8	9	40	1.69
16862093--16862741	182	3.6	178	78	5	610	40	8	11	38	1.72
16862726--16862769	18	2.4	18	100	0	88	43	4	11	40	1.61
16862782--16864393	181	9.1	179	75	8	1072	42	9	8	39	1.69
16863031--16864012	343	2.8	343	81	6	868	43	9	8	39	1.67
16869605--16869640	10	3.6	10	88	0	54	8	27	11	52	1.65
16869821--16869872	21	2.5	21	81	9	63	17	30	23	28	1.97
16870989--16871413	179	2.4	178	79	7	452	46	9	6	37	1.63
16871685--16871771	42	2.1	42	84	4	113	42	12	5	39	1.67
16871505--16871927	219	1.9	221	79	6	473	43	11	7	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16871735--16872409	180	3.8	177	75	12	615	41	11	7	39	1.70
16872532--16873083	181	3.1	177	81	7	569	41	8	7	42	1.64
16873524--16873556	18	1.9	17	88	11	50	54	6	6	33	1.50
16873147--16876330	181	17.7	180	76	7	2304	40	7	9	41	1.67
16875129--16875175	18	2.7	18	80	12	53	46	4	8	40	1.54
16873147--16878274	541	9.6	538	73	10	2732	40	8	9	41	1.68
16873147--16878272	362	14.4	359	74	10	3133	40	8	9	41	1.68
16876620--16878272	179	9.2	181	74	8	1087	39	8	9	41	1.69
16876959--16878183	538	2.3	527	78	6	1218	40	9	9	40	1.69
16876683--16878183	359	4.2	358	75	8	933	40	9	9	40	1.70
16878597--16878707	52	2.2	52	96	1	206	34	7	5	53	1.52
16879075--16879115	20	2.0	20	86	9	57	46	0	12	41	1.41
16878682--16879174	181	2.7	176	78	6	461	40	6	11	41	1.66
16879405--16887193	181	43.6	176	73	10	4267	40	7	9	41	1.67
16879430--16890197	181	60.3	174	71	12	2307	40	8	9	41	1.68
16879417--16893205	538	25.7	536	73	10	7532	40	8	9	41	1.68
16879417--16893205	718	19.3	710	73	10	5621	40	8	9	41	1.68
16885039--16886751	883	1.9	880	81	5	2010	41	7	8	42	1.65
16885186--16886543	703	1.9	699	81	5	1630	40	7	8	42	1.65
16886596--16886643	18	2.7	19	81	15	66	43	4	8	43	1.53
16886657--16887117	177	2.6	175	90	3	694	42	7	7	42	1.61
16887781--16893222	181	30.2	180	73	9	2940	40	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16890215--16893205	179	16.8	179	74	9	2119	40	8	9	40	1.69
16890245--16893222	534	5.6	527	75	8	2053	40	8	9	40	1.69
16890215--16893201	360	8.4	354	74	9	1924	40	8	9	40	1.69
16893231--16901455	181	45.5	179	72	10	3697	41	9	8	40	1.68
16899728--16899782	17	3.2	17	71	2	56	36	7	9	47	1.63
16893231--16906588	723	18.4	710	71	12	5129	41	9	8	40	1.68
16901470--16905585	181	22.7	181	71	12	915	41	9	7	40	1.67
16902249--16902310	30	2.1	30	90	6	99	45	14	3	37	1.61
16902284--16905642	181	18.7	182	76	8	2363	41	9	7	40	1.68
16906485--16906712	119	1.9	118	82	4	280	35	10	10	43	1.74
16906591--16908662	180	11.5	181	76	6	1605	41	9	8	39	1.70
16906605--16908669	181	11.5	180	75	8	1453	41	9	8	39	1.70
16906608--16908371	720	2.4	718	80	5	1866	41	9	8	39	1.69
16909050--16910139	175	6.1	179	76	9	778	38	8	11	41	1.71
16910765--16910791	6	4.5	6	100	0	54	14	0	0	85	0.61
16910762--16910816	12	3.9	14	80	19	62	21	1	0	76	0.88
16916109--16916137	14	2.0	15	93	6	51	41	0	13	44	1.44
16916151--16916314	46	3.6	46	78	8	165	34	8	15	41	1.77
16916184--16916307	24	5.3	24	68	14	80	35	8	14	41	1.75
16916166--16916390	22	10.0	22	66	16	88	34	8	16	41	1.78
16916379--16916454	35	2.2	35	90	6	120	44	13	11	30	1.79
16916521--16916595	17	4.4	17	77	9	73	29	14	14	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16916498--16916598	51	2.0	51	84	0	130	32	13	13	39	1.85
16916633--16916667	18	1.9	18	94	0	61	25	5	17	51	1.67
16916664--16916713	17	2.9	17	82	5	64	30	22	18	30	1.97
16916665--16916721	17	3.3	17	72	18	55	33	21	15	29	1.94
16916769--16916835	35	1.9	35	84	6	91	35	14	11	37	1.84
16917110--16917312	43	4.7	43	82	2	221	29	12	15	42	1.84
16918130--16918178	21	2.3	22	82	3	64	24	6	2	67	1.24
16918189--16918222	16	2.1	16	88	0	50	58	0	0	41	0.98
16919034--16923025	539	7.5	539	76	7	2898	41	8	9	41	1.68
16919034--16922677	181	20.3	181	76	6	2768	41	8	9	40	1.68
16921116--16921451	170	2.0	170	85	4	464	41	6	9	41	1.64
16928559--16928588	15	2.0	15	100	0	60	40	13	20	26	1.89
16933337--16933373	18	2.0	19	89	5	58	40	0	0	59	0.97
16933400--16933438	19	2.0	20	85	5	53	46	0	10	43	1.37
16933325--16954037	542	38.4	535	73	10	10185	40	7	9	41	1.67
16933349--16953657	181	112.7	181	74	9	11643	40	8	9	41	1.67
16940307--16942078	180	9.8	181	76	9	510	40	8	9	42	1.66
16943856--16944240	200	1.9	195	84	4	504	42	8	9	38	1.68
16933349--16954053	361	57.5	361	74	9	12179	40	7	9	41	1.67
16948732--16949031	166	1.8	165	83	4	401	38	9	9	42	1.70
16952535--16952567	18	1.9	17	88	11	50	48	6	6	39	1.53
16955945--16957188	181	6.9	177	74	8	833	39	8	9	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16957180--16957240	30	2.0	30	100	0	122	34	6	9	49	1.62
16958479--16958520	20	2.0	22	86	13	63	45	9	7	38	1.64
16957557--16960956	181	18.9	180	76	7	2523	41	8	9	41	1.68
16957557--16960909	538	6.2	538	78	7	2630	41	7	9	41	1.67
16957599--16960943	904	3.7	887	75	9	2770	41	8	9	41	1.68
16961632--16961674	14	3.2	13	83	9	59	81	0	0	18	0.69
16961596--16961676	19	4.0	19	73	17	65	77	1	2	18	0.94
16961633--16961682	19	2.6	17	82	17	55	80	0	2	18	0.82
16961647--16961688	19	2.2	19	83	12	50	78	0	7	14	0.95
16962062--16962097	10	3.6	10	96	0	63	75	22	0	2	0.94
16962062--16962104	11	3.9	11	81	6	52	69	25	0	4	1.07
16962601--16962660	26	2.3	27	80	8	70	33	21	25	20	1.97
16962814--16963064	89	2.8	86	78	5	277	44	13	22	19	1.85
16962814--16963133	176	1.8	178	81	1	401	45	13	22	19	1.85
16962991--16963317	151	2.2	152	78	7	342	45	15	21	18	1.86
16963217--16963354	64	2.2	63	81	7	167	42	13	23	21	1.88
16963557--16963655	41	2.4	41	91	0	162	35	21	12	31	1.90
16964220--16964248	10	2.7	11	94	5	51	0	10	0	89	0.48
16975617--16975670	3	18.7	3	88	3	76	68	1	1	27	1.10
16975704--16975779	38	2.0	39	85	12	104	26	23	28	21	1.99
16975800--16977105	180	7.3	179	77	7	999	41	8	8	40	1.67
16975800--16977102	361	3.6	354	76	8	1128	41	8	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16977280--16977312	18	1.9	17	88	11	50	48	6	6	39	1.53
16976854--16977397	301	1.8	300	84	3	736	40	8	7	43	1.62
16977146--16979155	181	11.4	179	73	10	979	40	8	9	41	1.68
16977764--16978182	177	2.3	178	77	6	427	42	7	8	41	1.63
16978251--16978291	20	2.1	18	80	20	55	36	0	12	51	1.40
16978347--16979552	180	6.7	179	76	7	990	40	9	8	41	1.68
16979387--16979428	18	2.4	18	81	18	54	47	4	4	42	1.45
16978347--16979555	533	2.3	534	79	6	1293	40	9	8	41	1.68
16979570--16982760	181	17.8	179	75	8	2162	39	8	10	41	1.69
16979570--17000759	537	38.8	532	68	13	3948	40	8	10	41	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113