genome.fa.s68.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  51  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13302539--13302595	27	2.1	27	80	3	62	38	10	5	45	1.61
13302442--13302958	119	4.4	117	81	11	570	34	10	6	48	1.63
13302441--13302957	179	2.9	174	83	8	612	34	10	6	48	1.64
13302989--13303054	18	3.6	18	76	10	62	74	1	7	16	1.12
13303626--13303650	10	2.5	10	100	0	50	60	16	0	24	1.36
13303900--13304010	22	5.1	21	70	16	66	67	8	5	18	1.36
13306483--13307099	249	2.5	248	84	4	769	32	8	11	47	1.71
13306483--13307113	124	5.1	124	82	4	691	32	8	11	47	1.71
13307187--13307228	22	1.9	22	85	0	57	26	19	7	47	1.74
13308196--13308254	27	2.3	25	86	13	84	77	0	11	10	0.98
13308237--13308265	14	2.0	15	93	6	51	82	3	6	6	0.93
13310606--13310698	32	2.9	32	79	1	107	33	20	13	32	1.92
13311535--13311861	126	2.6	126	83	2	381	33	12	14	39	1.84
13313636--13313696	29	2.1	28	82	8	70	73	14	8	3	1.19
13314821--13314863	14	3.0	14	83	13	52	69	0	4	25	1.07
13319455--13319488	4	8.8	4	93	6	61	52	20	0	26	1.46
13320243--13320306	22	3.0	21	70	19	53	32	0	1	65	1.02
13320276--13320309	11	3.1	11	82	0	50	26	0	0	73	0.83
13320273--13320323	22	2.3	22	76	6	59	35	0	0	64	0.94
13321646--13321691	18	2.7	16	81	15	56	28	2	0	69	1.00
13322476--13323039	279	2.0	280	91	1	916	49	6	10	33	1.63
13324459--13324521	22	3.0	21	77	13	58	19	0	31	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13324530--13324596	30	2.2	30	84	5	82	25	0	26	47	1.52
13324549--13324647	14	6.9	14	69	10	56	23	0	25	51	1.48
13325084--13325108	6	4.2	6	100	0	50	84	0	0	16	0.63
13327044--13327077	18	1.9	17	88	5	50	44	0	5	50	1.26
13327471--13327561	4	22.8	4	71	14	64	74	4	0	20	0.98
13327479--13327537	17	3.7	16	78	19	61	72	5	0	22	1.03
13327495--13327567	9	8.3	9	78	21	68	79	2	0	17	0.85
13327504--13327583	23	3.4	23	75	20	76	80	3	0	16	0.86
13327471--13327577	48	2.2	48	83	9	130	74	4	0	20	0.99
13327499--13327571	28	2.6	28	82	8	87	79	2	0	17	0.85
13327499--13327581	24	3.3	24	77	13	87	79	3	0	16	0.87
13327485--13327580	17	6.1	15	75	16	70	77	4	0	18	0.93
13327499--13327583	14	6.3	12	71	18	53	80	3	0	16	0.86
13328611--13328646	2	18.0	2	94	0	63	47	2	0	50	1.15
13329063--13329091	4	7.2	4	100	0	58	75	0	24	0	0.80
13330077--13330114	19	2.0	19	100	0	76	36	5	15	42	1.70
13331974--13332044	32	2.2	31	80	11	81	28	7	23	40	1.81
13336418--13336480	32	2.0	32	81	6	74	57	3	6	33	1.40
13345699--13346212	56	8.8	57	76	12	397	43	8	14	34	1.74
13347672--13347722	8	5.7	9	84	11	61	78	0	11	9	0.97
13348740--13349036	41	7.1	41	79	6	269	25	15	20	37	1.93
13348740--13349036	83	3.6	82	83	4	319	25	15	20	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13348901--13349036	42	3.2	43	77	4	107	27	16	21	35	1.94
13348776--13348999	124	1.8	124	84	0	304	26	14	21	37	1.92
13349224--13349308	11	8.0	11	68	16	63	20	3	1	75	1.02
13349228--13349275	25	2.0	24	88	12	71	20	2	2	75	1.02
13349225--13349300	5	14.8	5	72	15	57	19	3	1	75	1.04
13350247--13350306	25	2.4	25	83	10	70	21	0	6	71	1.08
13350241--13350291	4	12.8	4	87	8	77	21	0	1	76	0.88
13350326--13350373	19	2.5	18	83	10	51	14	4	2	79	0.98
13350315--13350393	5	15.4	5	72	15	63	16	6	2	74	1.13
13350417--13350865	59	7.7	58	81	6	500	44	7	12	34	1.72
13353316--13353734	60	7.1	58	81	7	463	35	12	6	45	1.69
13353316--13353704	177	2.2	177	85	4	534	34	13	6	45	1.70
13353729--13353770	22	1.9	22	85	9	59	71	2	11	14	1.24
13353725--13353821	45	2.2	43	77	15	101	74	2	9	14	1.16
13353752--13353879	17	7.2	17	70	21	61	73	4	3	17	1.16
13353730--13353830	22	4.6	21	70	19	55	74	1	7	15	1.14
13354696--13354769	18	4.1	17	71	19	53	67	2	10	18	1.32
13354821--13354853	3	11.3	3	87	6	50	69	0	0	30	0.88
13354812--13354861	14	3.7	14	80	17	61	66	0	0	34	0.92
13360028--13360064	11	3.5	11	79	20	51	64	5	2	27	1.28
13360341--13360384	18	2.3	18	84	11	52	70	0	4	25	1.06
13360381--13360445	30	2.2	30	83	5	78	52	32	1	13	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13360402--13360566	28	5.8	28	72	9	102	47	31	1	18	1.59
13360661--13360703	15	2.9	15	82	6	52	53	25	0	20	1.46
13360656--13360703	15	3.3	14	79	5	51	56	22	0	20	1.43
13362159--13362197	19	2.1	19	95	0	69	35	17	12	33	1.88
13362569--13362610	13	2.9	14	82	13	50	42	0	0	57	0.99
13362597--13362654	21	2.5	24	84	15	79	43	0	0	56	0.99
13363434--13363526	30	3.2	30	82	11	113	48	0	2	49	1.13
13363847--13363872	2	13.0	2	100	0	52	50	0	0	50	1.00
13367792--13367908	29	4.2	29	79	6	118	32	3	4	59	1.33
13368529--13368888	136	2.6	136	84	6	467	38	17	18	25	1.93
13369028--13369097	27	2.6	27	76	8	72	42	0	2	54	1.15
13369051--13369106	19	2.8	19	76	17	60	46	0	0	53	1.00
13370350--13370376	2	13.5	2	100	0	54	51	0	0	48	1.00
13372540--13372579	16	2.4	17	83	4	55	62	0	0	37	0.95
13377310--13377350	15	2.9	14	82	10	57	31	0	0	68	0.90
13378135--13378693	279	2.0	276	90	2	888	49	6	10	33	1.62
13380316--13380451	4	34.2	4	71	14	86	72	3	1	22	1.08
13380316--13380444	21	6.0	22	70	17	67	72	3	1	22	1.10
13380345--13380444	22	4.6	21	74	15	78	74	4	2	20	1.08
13380397--13380457	11	5.2	12	78	9	56	78	4	0	16	0.91
13380340--13380466	23	5.3	22	72	22	80	75	3	1	18	1.04
13380401--13380461	12	5.3	12	77	15	67	80	4	0	14	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13380401--13380466	23	2.9	23	86	10	100	80	4	0	15	0.87
13381484--13381514	2	15.5	2	93	0	53	51	3	0	45	1.17
13381932--13381960	4	7.2	4	100	0	58	75	0	24	0	0.80
13385878--13385920	13	3.4	13	77	6	52	20	2	48	27	1.62
13386990--13387016	2	13.5	2	100	0	54	48	0	0	51	1.00
13400157--13400193	11	3.5	11	79	20	51	64	5	2	27	1.28
13400533--13400697	28	5.8	28	72	11	120	47	30	2	19	1.62
13400645--13400735	14	6.4	14	75	9	69	51	28	2	17	1.57
13400828--13400870	15	2.9	15	82	6	52	53	25	0	20	1.46
13400823--13400870	15	3.3	14	79	5	51	56	22	0	20	1.43
13402325--13402363	19	2.1	19	95	0	69	35	17	12	33	1.88
13402733--13402761	13	2.1	14	93	6	51	51	0	0	48	1.00
13402699--13402773	29	2.5	30	70	10	73	46	0	0	53	1.00
13402749--13402795	21	2.2	21	96	0	85	46	0	0	53	1.00
13404033--13404062	2	15.0	2	100	0	60	50	0	0	50	1.00
13407374--13407424	21	2.5	21	96	3	95	50	0	0	49	1.00
13408286--13408327	2	22.5	2	86	13	63	50	0	0	50	1.00
13408275--13408330	10	5.5	10	80	20	55	50	0	1	48	1.11
13408926--13408968	11	3.8	11	77	17	52	86	2	2	9	0.76
13413898--13413937	16	2.5	16	84	8	55	10	0	10	80	0.92
13414230--13414341	59	1.9	59	92	0	188	30	6	18	44	1.74
13415281--13415330	19	2.7	18	78	6	55	60	2	0	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13415347--13415402	29	2.0	28	89	6	87	57	5	1	35	1.32
13415375--13415414	20	2.0	21	90	5	64	47	5	5	42	1.47
13415439--13415481	18	2.5	17	76	3	50	25	0	6	67	1.15
13415477--13415514	17	2.2	17	86	9	51	31	0	2	65	1.06
13415650--13415702	23	2.4	22	79	17	56	30	3	1	64	1.22
13416042--13416111	21	3.5	20	75	11	63	34	0	7	58	1.25
13415999--13416090	29	3.2	29	71	10	80	39	0	6	54	1.26
13416074--13416116	22	2.0	21	86	4	59	25	0	9	65	1.22
13416126--13416163	20	1.9	20	84	10	51	34	0	10	55	1.34
13416186--13416215	13	2.4	13	94	5	53	20	0	10	70	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113