genome.fa.s68.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  43  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11929250--11929349	16	6.4	16	67	18	50	24	3	2	71	1.11
11929295--11929358	11	5.7	11	77	15	53	17	3	0	79	0.85
11929295--11929358	28	2.3	28	82	12	87	17	3	0	79	0.85
11929311--11929355	13	3.2	13	90	9	63	20	2	0	77	0.87
11929382--11929663	122	2.3	120	85	7	401	44	6	12	37	1.67
11929382--11929665	59	4.7	59	76	10	263	44	6	11	37	1.68
11933426--11933539	20	5.6	21	77	8	92	39	10	6	43	1.64
11933434--11933531	20	4.9	20	81	6	101	40	10	7	41	1.66
11933440--11933554	61	1.9	61	83	7	153	37	11	7	43	1.70
11933433--11933533	40	2.5	39	80	14	125	39	10	6	42	1.67
11933922--11933979	11	5.3	11	74	0	53	39	6	1	51	1.39
11933927--11934097	22	7.8	22	73	7	105	39	7	4	48	1.51
11933916--11934023	44	2.5	43	77	4	108	40	7	4	47	1.52
11934102--11934142	21	1.9	22	85	5	57	41	17	0	41	1.49
11934246--11934411	22	7.6	22	72	12	85	38	7	3	50	1.49
11934265--11934410	44	3.3	44	78	9	122	37	8	4	49	1.53
11934419--11934520	22	4.6	22	77	0	78	36	7	2	52	1.45
11934325--11934483	44	3.6	44	72	9	135	39	10	3	47	1.53
11934267--11934504	67	3.6	68	75	9	172	38	8	3	49	1.52
11934421--11934520	44	2.3	44	80	3	103	36	8	3	53	1.46
11934795--11935159	22	16.5	22	71	7	141	38	7	6	47	1.59
11934783--11935106	44	7.3	44	72	5	161	39	8	7	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11935334--11935397	21	3.0	21	75	11	58	35	7	4	51	1.52
11935400--11935508	22	5.0	22	81	4	96	44	3	2	48	1.34
11935404--11935488	11	7.7	11	80	5	82	43	3	2	50	1.32
11935463--11935500	19	2.0	19	85	10	51	47	5	0	47	1.24
11935422--11935516	44	2.2	44	84	3	120	41	4	3	51	1.37
11935422--11935518	22	4.4	22	80	5	79	42	4	3	50	1.37
11938665--11938705	19	2.2	20	78	13	50	24	21	14	39	1.91
11938726--11938766	19	2.1	20	86	4	57	41	14	4	39	1.67
11938852--11938890	16	2.4	16	82	0	51	71	2	25	0	0.98
11938863--11938918	20	2.6	22	78	13	64	73	0	21	5	1.03
11938861--11938902	16	2.7	16	85	3	50	78	0	19	2	0.86
11939539--11939623	37	2.4	35	79	11	91	45	8	10	35	1.69
11939607--11939640	17	2.0	18	88	11	54	44	0	8	47	1.34
11941084--11941123	13	3.2	12	83	16	55	50	0	0	50	1.00
11948530--11948637	42	2.6	42	76	8	121	48	6	22	23	1.73
11951194--11951262	27	2.7	25	76	14	70	36	28	2	31	1.72
11951234--11951263	12	2.5	12	94	0	51	36	30	0	33	1.58
11952522--11952611	37	2.4	37	85	10	114	53	22	6	17	1.67
11952540--11952635	37	2.6	37	78	6	104	58	18	7	15	1.60
11955720--11955753	14	2.4	14	95	0	59	44	2	8	44	1.50
11955832--11955871	20	2.0	21	90	5	64	32	15	10	42	1.79
11964422--11964455	17	2.0	17	88	11	52	47	8	0	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11964454--11964524	37	2.0	35	83	10	90	32	9	12	45	1.75
11964540--11964649	53	2.0	56	83	10	140	42	5	7	44	1.55
11965170--11965220	17	3.1	16	78	10	50	1	25	1	70	1.08
11965166--11965208	17	2.5	18	81	11	54	2	20	0	76	0.89
11966378--11966423	21	2.2	21	88	0	65	32	6	23	36	1.81
11966538--11966599	27	2.3	27	86	2	81	50	1	1	46	1.20
11968541--11968637	22	4.4	21	76	6	79	50	4	4	41	1.40
11968541--11968651	44	2.5	44	82	2	125	51	3	4	40	1.40
11968586--11968652	11	6.1	11	84	6	73	53	2	2	40	1.31
11968580--11968652	33	2.2	33	80	4	85	53	2	2	41	1.29
11968580--11968652	22	3.3	22	86	0	101	53	2	2	41	1.29
11968615--11968674	22	2.8	21	82	7	66	46	1	5	46	1.34
11968677--11968740	21	3.0	21	75	11	58	51	4	7	35	1.52
11968897--11968979	22	3.5	23	71	22	57	56	1	4	37	1.28
11968928--11969067	22	6.4	22	78	8	106	51	5	7	35	1.55
11968921--11969067	66	2.2	66	83	7	174	51	5	8	34	1.55
11968969--11969071	44	2.3	44	84	0	134	47	6	9	35	1.63
11969137--11969242	22	4.8	21	71	6	59	46	8	7	37	1.63
11969181--11969298	44	2.7	43	80	3	130	42	7	7	42	1.62
11969181--11969302	22	5.6	22	75	6	97	42	7	8	41	1.62
11969578--11969647	22	3.2	22	81	4	70	48	2	10	38	1.51
11969561--11969660	44	2.3	44	80	3	103	53	3	8	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11969606--11969664	22	2.7	22	75	0	64	52	3	8	35	1.49
11969940--11969980	21	1.9	22	90	5	66	43	0	14	41	1.45
11970006--11970155	22	6.8	22	71	8	90	49	4	6	39	1.50
11969996--11970155	44	3.6	44	75	9	121	48	4	6	40	1.50
11970547--11970651	21	5.1	20	76	12	97	42	5	11	40	1.65
11970548--11970657	41	2.6	42	79	13	129	42	5	11	40	1.65
11970527--11970644	62	1.9	63	85	5	168	43	6	11	38	1.68
11970542--11970658	21	5.6	21	73	10	96	43	5	11	40	1.62
11974862--11974913	21	2.5	21	90	6	79	50	0	0	50	1.00
11974862--11974913	22	2.5	22	93	6	90	50	0	0	50	1.00
11974886--11974942	30	1.9	30	85	0	78	52	1	0	45	1.11
11980736--11980773	19	2.0	20	85	15	53	23	2	5	68	1.23
11981678--11981704	6	4.5	6	100	0	54	29	18	18	33	1.95
11982259--11982299	20	2.0	21	86	13	59	56	0	4	39	1.21
11985372--11985405	17	1.9	18	88	5	52	20	2	0	76	0.92
11985371--11985410	21	2.0	20	90	5	62	17	5	0	77	0.94
11985164--11985464	151	2.0	148	87	5	437	35	11	8	44	1.72
11988648--11988725	39	2.0	39	85	5	104	17	8	21	51	1.73
11990131--11990238	42	2.6	42	76	8	121	48	6	22	23	1.73
11990379--11990427	24	2.0	24	84	0	62	38	8	32	20	1.82
11994145--11994221	37	2.1	37	87	4	111	54	22	7	15	1.66
11994150--11994237	37	2.4	37	80	0	95	59	18	6	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11998818--11998872	20	2.6	23	77	16	64	65	3	0	30	1.10
11999014--11999053	20	2.0	21	90	5	64	32	15	10	42	1.79
12000855--12000900	24	2.0	23	86	4	65	36	2	0	60	1.09
12004155--12004184	2	15.0	2	92	0	51	53	0	0	46	1.00
12004813--12004885	38	1.9	37	83	8	94	49	6	0	43	1.29
12009830--12009891	31	2.0	31	87	0	88	37	17	19	25	1.94
12012763--12012882	37	3.1	37	68	19	109	28	11	2	57	1.47
12014811--12014844	2	17.0	2	87	0	50	44	2	0	52	1.16
12019239--12019289	23	2.2	24	86	6	70	50	0	1	47	1.12
12020482--12020558	35	2.2	35	83	6	102	51	0	3	44	1.19
12020491--12020554	19	3.6	18	77	12	69	53	0	3	43	1.16
12020489--12020566	35	2.4	32	82	16	97	53	0	2	43	1.14
12021232--12021333	27	3.7	27	68	19	68	52	2	0	44	1.16
12021283--12021325	22	2.0	20	86	8	59	48	2	0	48	1.14
12022568--12022619	23	2.2	22	86	10	68	9	7	7	75	1.21
12028592--12028649	16	3.8	16	71	13	50	63	1	0	34	1.04
12028798--12028850	21	2.5	21	96	0	97	15	20	45	18	1.85
12030045--12030107	20	3.4	19	77	16	69	34	0	0	65	0.93
12030045--12030117	20	3.8	20	72	24	59	35	0	0	64	0.94
12032880--12032966	42	2.1	42	91	0	138	20	13	43	21	1.87
12032805--12033134	105	3.1	105	95	0	588	20	13	44	21	1.86
12033027--12033183	63	2.5	63	91	0	251	22	12	43	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12033237--12033445	36	5.5	36	63	18	91	19	15	42	22	1.88
12033231--12033550	78	4.1	78	93	0	469	19	15	43	22	1.88
12033359--12033487	42	3.2	42	66	16	128	19	15	43	21	1.88
12033481--12033808	57	5.8	55	74	13	231	21	13	40	23	1.89
12033444--12033685	60	4.2	59	72	15	227	20	14	41	22	1.89
12033439--12033793	171	2.1	171	98	0	692	21	13	41	23	1.88
12033729--12033808	18	4.4	18	65	22	51	22	8	41	27	1.83
12033768--12033856	33	2.7	33	80	3	99	25	12	37	24	1.91
12035475--12035532	31	1.9	31	96	3	109	24	17	24	34	1.96
12038153--12038198	11	4.2	11	82	17	60	34	0	2	63	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113