genome.fa.s68.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  33  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10207573--10207651	22	3.6	22	70	11	56	44	3	8	43	1.53
10207666--10207748	22	3.7	22	81	1	85	43	3	13	39	1.61
10207801--10207858	22	2.7	22	83	2	64	44	12	6	36	1.68
10207819--10207980	22	7.1	22	69	9	83	41	8	11	38	1.70
10208344--10208453	21	5.3	21	71	4	71	45	7	6	40	1.57
10212906--10213035	21	6.1	21	69	7	93	34	6	13	46	1.68
10213332--10213373	22	1.9	22	95	0	75	28	11	7	52	1.64
10213418--10213553	22	6.2	22	70	11	82	39	5	8	47	1.55
10213418--10213561	44	3.3	44	74	13	134	38	5	8	47	1.57
10213490--10213566	22	3.5	21	77	8	82	38	3	7	49	1.50
10213535--10213591	30	1.9	30	85	7	80	40	7	5	47	1.53
10213577--10213681	22	4.9	21	79	9	86	42	9	3	43	1.55
10213644--10213716	22	3.3	22	75	9	60	34	8	8	49	1.62
10213667--10213724	22	2.6	21	73	10	53	27	8	10	53	1.64
10213804--10213845	22	1.9	22	90	9	68	42	4	4	47	1.45
10213849--10213970	44	2.7	46	72	13	117	36	10	4	47	1.60
10213923--10214099	22	8.1	22	72	15	109	35	10	7	46	1.66
10214330--10214399	22	3.2	22	78	8	63	37	8	10	44	1.69
10214361--10214575	22	9.8	22	72	7	114	36	7	7	47	1.61
10214886--10215074	22	8.9	22	68	12	83	40	5	2	50	1.40
10214886--10214996	44	2.5	43	80	7	107	39	5	1	53	1.35
10214932--10215057	61	2.1	61	86	0	171	42	5	1	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10214942--10215074	11	11.5	11	68	9	59	41	5	2	51	1.37
10216764--10216809	23	1.9	25	82	8	60	28	2	6	63	1.31
10223019--10223061	2	21.5	2	100	0	86	51	0	0	48	1.00
10225196--10225265	13	5.2	13	70	14	52	15	2	2	78	0.99
10225193--10225241	16	3.1	15	83	13	62	10	2	2	85	0.76
10225185--10225262	23	3.3	24	82	10	72	12	5	2	79	1.00
10225224--10225289	27	2.5	27	82	7	73	19	3	4	72	1.15
10225248--10225301	27	2.0	27	82	7	65	22	5	3	68	1.26
10245228--10245542	40	7.7	40	76	10	237	23	15	18	43	1.87
10245260--10245584	40	7.9	39	79	11	244	22	15	18	42	1.88
10245777--10245812	17	2.1	17	90	10	56	77	0	2	19	0.88
10246298--10246350	11	5.1	10	76	14	54	58	0	41	0	0.98
10248340--10248384	17	2.6	18	89	6	67	0	6	6	86	0.70
10253654--10253708	7	7.9	7	80	11	51	10	0	41	47	1.39
10253633--10253721	35	2.6	35	80	1	90	11	1	34	52	1.44
10253579--10253694	28	4.1	27	70	14	83	12	0	34	52	1.44
10253651--10253708	14	4.2	14	79	14	59	10	0	39	50	1.37
10253729--10253783	14	3.9	14	83	4	74	14	1	32	50	1.53
10253842--10253896	21	2.7	21	88	2	85	18	0	30	50	1.47
10253884--10253970	29	3.0	29	77	9	88	26	0	27	45	1.54
10253915--10253987	16	4.8	16	75	10	62	27	0	30	42	1.56
10254333--10254370	3	12.3	3	94	5	67	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10254427--10254469	14	3.2	14	87	6	63	69	0	0	30	0.88
10254462--10254495	12	2.8	12	81	0	50	70	14	2	11	1.27
10255640--10255717	20	4.0	20	72	9	63	50	1	1	47	1.17
10255778--10255820	12	3.6	12	82	17	54	44	0	11	44	1.40
10256813--10256845	15	2.2	15	100	0	66	42	15	0	42	1.46
10258059--10258084	10	2.6	10	100	0	52	61	7	0	30	1.24
10258535--10258568	18	2.0	17	88	11	52	52	0	2	44	1.16
10258532--10258583	27	1.9	26	84	7	68	53	0	1	44	1.11
10258592--10258672	17	4.4	19	76	17	73	60	3	1	34	1.22
10261611--10261649	5	7.8	5	88	11	62	17	0	0	82	0.68
10261657--10261838	48	3.7	48	85	5	231	35	26	12	25	1.91
10265613--10265661	16	2.7	19	78	15	59	32	0	6	61	1.21
10266117--10266170	25	2.2	25	83	6	65	38	5	18	37	1.74
10266180--10266247	31	2.2	31	81	0	82	20	23	25	30	1.98
10266792--10267186	57	6.7	57	85	9	524	45	7	12	33	1.71
10270487--10270515	3	10.0	3	92	7	51	31	0	0	68	0.89
10270523--10270633	4	27.8	4	72	18	56	27	0	3	67	1.13
10270569--10270632	14	4.5	15	76	23	50	29	0	1	68	0.99
10270583--10270624	11	3.8	11	87	6	50	28	0	0	71	0.86
10270494--10270634	48	3.0	46	71	15	128	28	1	3	66	1.16
10271001--10271055	26	2.2	25	90	3	83	41	9	18	30	1.81
10271197--10271245	20	2.5	20	93	0	80	22	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10271488--10271529	14	3.1	15	80	19	56	7	40	21	30	1.80
10271580--10271640	17	3.6	17	75	4	61	11	3	8	77	1.11
10271661--10272100	151	2.9	152	96	0	801	30	14	18	37	1.90
10275782--10275852	13	5.1	13	73	19	54	80	0	14	5	0.89
10275779--10275854	19	4.0	20	75	24	67	77	0	15	6	0.96
10275782--10275843	11	5.0	13	76	21	62	80	0	14	4	0.87
10275807--10275835	10	2.9	10	100	0	58	93	0	6	0	0.36
10275890--10275928	1	39.0	1	94	0	69	97	2	0	0	0.17
10277096--10277709	41	15.1	40	91	4	850	23	17	23	35	1.95
10277096--10277709	122	5.0	121	92	3	920	23	17	23	35	1.95
10277716--10277788	8	9.4	8	88	8	89	84	9	0	5	0.75
10277716--10277811	30	3.2	30	81	10	115	84	9	0	6	0.78
10277717--10277812	46	2.1	45	86	7	133	83	9	0	7	0.81
10277716--10277803	1	88.0	1	74	0	59	85	9	0	5	0.75
10277998--10278026	3	10.0	3	92	7	51	31	0	0	68	0.89
10278034--10278142	4	26.8	4	73	17	50	28	0	3	66	1.14
10278093--10278133	11	3.8	11	87	9	50	29	0	0	70	0.87
10278506--10278562	27	2.2	26	90	3	87	43	8	17	29	1.79
10278703--10278751	20	2.5	20	93	0	80	22	26	26	24	2.00
10279080--10279116	1	37.0	1	100	0	74	0	0	0	100	0.00
10279121--10279548	151	2.8	152	96	0	795	29	14	18	37	1.90
10282854--10282880	1	27.0	1	100	0	54	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10283240--10283317	20	4.0	20	74	20	67	78	0	15	6	0.95
10283268--10283298	11	2.8	11	100	0	62	93	0	6	0	0.35
10283265--10283298	1	34.0	1	87	0	50	94	0	5	0	0.32
10283353--10283383	1	31.0	1	100	0	62	100	0	0	0	0.00
10284547--10285154	41	15.2	39	89	5	787	23	17	22	35	1.95
10284547--10285154	81	7.6	81	88	6	825	23	17	22	35	1.95
10284547--10285154	122	5.0	122	91	6	906	23	17	22	35	1.95
10285161--10285244	9	9.2	9	83	10	82	83	10	0	5	0.81
10285166--10285244	17	4.4	17	86	10	95	82	11	0	6	0.84
10285165--10285244	18	4.3	18	83	9	99	82	11	0	6	0.83
10285430--10285458	3	10.0	3	92	7	51	31	0	0	68	0.89
10285466--10285576	4	27.8	4	72	18	56	27	0	3	67	1.13
10285512--10285575	14	4.5	15	76	23	50	29	0	1	68	0.99
10285526--10285567	11	3.8	11	87	6	50	28	0	0	71	0.86
10285437--10285577	48	3.0	46	71	15	128	28	1	3	66	1.16
10285946--10286000	26	2.2	25	90	3	83	41	9	18	30	1.81
10286142--10286190	20	2.5	20	93	0	80	22	26	26	24	2.00
10286507--10286535	1	29.0	1	100	0	58	0	0	0	100	0.00
10286590--10287029	151	2.9	152	96	0	801	30	14	18	37	1.90
10287970--10288018	18	2.8	18	78	3	55	75	0	20	4	0.96
10289209--10289870	40	16.0	40	85	9	852	23	17	21	37	1.94
10289209--10289870	81	8.0	81	89	7	960	23	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10289209--10289870	121	5.3	120	89	7	943	23	17	21	37	1.94
10289409--10289833	212	2.0	213	95	0	771	24	17	21	37	1.94
10289877--10289976	8	12.5	8	89	9	143	88	12	0	0	0.53
10289877--10289976	15	6.2	16	88	11	143	88	12	0	0	0.53
10289877--10289976	23	4.2	24	86	12	143	88	12	0	0	0.53
10289877--10289968	1	92.0	1	78	0	94	89	10	0	0	0.50
10290015--10290099	42	2.0	42	95	2	154	23	20	23	32	1.97
10290106--10290172	9	7.3	9	83	9	82	88	10	0	1	0.59
10290106--10290172	8	8.5	8	83	6	68	88	10	0	1	0.59
10290106--10290172	17	3.9	17	86	5	82	88	10	0	1	0.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113