genome.fa.s68.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  108  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21208015--21208102	3	30.3	3	70	19	62	31	1	5	61	1.27
21208013--21208095	8	10.4	8	70	17	57	33	1	6	59	1.30
21207997--21208047	19	2.8	18	88	5	68	35	1	9	52	1.46
21208889--21208927	5	7.4	5	91	2	51	15	2	5	76	1.06
21210005--21210032	2	14.0	2	100	0	56	50	0	0	50	1.00
21211298--21211389	44	2.1	44	91	0	148	23	19	7	48	1.74
21212280--21212343	33	1.9	33	93	0	110	42	9	14	34	1.77
21227232--21227277	23	2.0	23	87	8	67	50	2	0	47	1.13
21228708--21228745	12	3.1	12	85	14	51	50	0	2	47	1.15
21228693--21228758	24	2.8	23	78	17	57	45	1	1	51	1.19
21230511--21230543	14	2.3	15	94	5	59	45	0	9	45	1.35
21230973--21231032	25	2.4	24	76	20	61	43	3	0	53	1.17
21231128--21231170	17	2.7	16	86	10	61	48	0	2	48	1.14
21231170--21231250	42	1.9	42	82	7	101	49	2	4	43	1.37
21231328--21231369	16	2.6	16	75	17	50	50	0	0	50	1.00
21231335--21231400	9	7.7	9	71	21	61	48	0	0	51	1.00
21231335--21231400	26	2.6	26	92	4	109	48	0	0	51	1.00
21231247--21231392	17	9.2	16	65	26	62	47	0	1	50	1.14
21231518--21231547	14	2.1	14	93	0	51	53	3	0	43	1.17
21236375--21236426	12	4.7	11	83	9	54	38	0	0	61	0.96
21236380--21236423	22	1.9	24	86	9	65	40	0	0	59	0.98
21239736--21239769	6	5.7	6	96	0	50	50	0	8	41	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21241788--21241828	17	2.4	18	80	12	50	36	7	2	53	1.42
21242633--21242668	16	2.2	16	90	0	54	2	11	2	83	0.86
21243407--21243515	30	3.7	29	72	16	80	39	5	6	48	1.52
21244078--21244102	2	12.5	2	100	0	50	52	0	0	48	1.00
21249858--21250063	103	2.0	103	94	0	358	27	20	29	22	1.98
21252979--21253013	2	17.5	2	100	0	70	51	0	0	48	1.00
21254191--21254233	14	2.9	15	83	16	54	9	0	39	51	1.34
21254176--21254446	45	5.8	45	75	12	156	18	1	32	48	1.57
21254168--21254326	51	3.3	50	77	13	138	15	1	33	49	1.53
21254198--21254270	35	2.1	36	82	7	87	15	0	32	52	1.43
21254171--21254297	65	2.0	64	81	10	152	14	0	32	51	1.48
21254259--21254361	15	7.0	14	75	14	82	17	1	33	46	1.59
21254171--21254447	16	17.7	15	71	17	174	18	1	31	48	1.57
21254826--21254872	20	2.3	20	79	10	51	74	8	0	17	1.05
21255521--21255554	14	2.4	14	90	9	52	5	5	11	76	1.14
21255688--21255743	24	2.4	23	96	3	103	17	10	42	28	1.83
21256126--21256410	110	2.6	110	81	0	345	37	16	20	24	1.93
21256546--21256594	23	2.1	23	88	0	71	30	20	20	28	1.98
21256800--21256860	23	2.7	23	92	2	97	27	21	26	24	1.99
21256280--21256963	133	5.2	131	78	3	647	36	17	20	24	1.94
21256933--21257029	22	4.4	22	74	7	90	29	16	24	28	1.97
21256924--21257029	44	2.4	44	82	3	133	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21257281--21257385	41	2.5	40	85	8	131	31	17	18	33	1.94
21263942--21263982	19	2.2	19	86	8	57	58	17	0	24	1.38
21265526--21265709	16	11.8	16	69	17	109	20	1	29	48	1.59
21265510--21265717	31	6.7	30	70	16	106	19	1	30	48	1.58
21265506--21265642	14	9.1	14	72	13	85	16	1	32	49	1.55
21265533--21265675	46	3.1	46	81	5	180	18	2	30	48	1.60
21267130--21267174	8	5.5	8	86	5	63	6	0	4	88	0.61
21267136--21267174	17	2.3	17	95	0	69	7	0	2	89	0.56
21269514--21269548	15	2.4	14	90	4	52	14	2	0	82	0.77
21269843--21269882	6	6.8	6	82	5	55	2	2	12	82	0.87
21269852--21269892	17	2.5	17	92	4	66	7	2	9	80	0.99
21270211--21270243	2	16.5	2	93	0	57	54	0	0	45	0.99
21271053--21271078	2	13.0	2	100	0	52	50	0	0	50	1.00
21274726--21274843	59	2.0	59	96	0	218	21	9	31	38	1.85
21277542--21277580	20	1.9	21	94	5	71	74	0	2	23	0.94
21277531--21277602	22	3.3	21	67	12	56	72	0	1	26	0.93
21277531--21277609	23	3.6	21	72	24	58	70	0	1	27	0.95
21281456--21281497	21	2.0	21	86	9	59	59	19	9	11	1.59
21282715--21282783	34	2.0	34	97	0	129	50	15	0	33	1.45
21282723--21282764	22	1.9	22	85	0	57	52	16	0	30	1.44
21284517--21284561	18	2.6	18	85	3	65	66	0	0	33	0.92
21284818--21284862	22	2.0	22	87	8	65	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21284808--21284889	23	3.6	22	75	19	64	36	0	0	63	0.95
21285632--21285671	14	2.9	14	81	11	55	67	0	0	32	0.91
21285613--21285672	26	2.2	26	80	14	68	65	0	0	35	0.93
21292797--21292832	18	1.9	18	94	5	63	77	2	2	16	1.00
21298670--21298758	23	3.4	26	75	20	78	57	0	1	41	1.06
21298694--21298758	12	5.3	12	79	3	60	58	0	0	41	0.98
21298697--21298758	25	2.5	23	82	10	70	56	0	0	43	0.99
21300938--21300971	14	2.4	14	85	0	50	29	2	0	67	1.05
21302540--21302589	23	2.1	24	85	10	68	28	8	10	54	1.62
21306386--21306459	34	2.1	35	90	2	114	36	2	4	56	1.32
21306906--21306941	12	2.9	12	91	4	54	41	5	2	50	1.40
21312138--21312187	23	2.1	24	85	10	68	54	10	8	28	1.62
21315193--21315227	12	2.8	12	91	4	52	51	2	5	40	1.40
21316002--21316026	13	1.9	13	100	0	50	40	16	12	32	1.84
21322259--21322290	16	2.0	16	93	0	55	50	28	12	9	1.71
21322853--21322890	4	9.5	4	88	0	58	71	0	28	0	0.87
21322853--21322890	12	3.2	12	92	0	67	71	0	28	0	0.87
21328791--21328854	28	2.3	28	84	10	78	57	0	1	40	1.08
21329253--21329328	12	6.1	12	72	14	64	81	1	10	6	0.92
21330467--21330504	16	2.4	16	86	4	51	68	2	2	26	1.16
21330491--21330542	16	2.9	18	78	18	56	82	1	9	5	0.90
21330491--21330529	8	4.8	8	84	15	53	84	0	10	5	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21333327--21333366	21	2.0	19	85	9	53	47	2	2	47	1.29
21335304--21335524	110	2.0	110	91	0	361	31	13	18	37	1.89
21338679--21338710	2	16.0	2	100	0	64	50	0	0	50	1.00
21339908--21339937	10	3.1	10	95	4	53	36	0	0	63	0.95
21340718--21340764	3	16.7	3	82	8	55	65	0	0	34	0.93
21340821--21340863	22	1.9	23	85	4	61	20	48	13	16	1.80
21342233--21342325	16	5.9	15	75	9	78	50	27	1	20	1.55
21342227--21342344	32	3.7	30	75	11	94	49	30	1	18	1.58
21342233--21342287	7	7.0	8	73	19	53	52	27	0	20	1.46
21342228--21342344	15	7.4	16	81	9	71	48	30	1	18	1.58
21342227--21342353	47	2.7	46	79	9	139	49	30	1	18	1.57
21343614--21343655	21	2.0	21	90	0	66	26	2	2	69	1.13
21347795--21347825	14	2.3	13	94	5	53	83	0	12	3	0.75
21349812--21349854	22	2.0	22	95	0	77	25	20	20	32	1.97
21350284--21350326	22	2.0	22	90	0	68	27	20	18	32	1.96
21349629--21350574	472	2.0	472	94	0	1651	26	17	17	38	1.92
21350386--21350677	110	2.7	109	80	3	307	21	19	17	40	1.91
21350423--21350715	109	2.7	110	77	6	308	21	20	18	40	1.91
21350624--21350874	88	2.9	87	84	8	285	20	17	18	43	1.89
21351194--21351520	179	1.8	179	86	2	478	25	15	9	49	1.75
21351363--21351635	102	2.7	102	89	3	390	23	15	12	47	1.80
21352118--21352443	57	5.5	55	76	14	278	38	13	6	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21352118--21352443	120	2.7	117	81	11	351	38	13	6	41	1.70
21352428--21352465	19	2.0	19	100	0	76	47	15	0	36	1.46
21352541--21352589	15	3.4	14	81	13	64	75	0	8	16	1.03
21352541--21352599	27	2.1	28	87	9	86	76	0	6	16	1.00
21352640--21352665	4	6.5	4	100	0	52	76	0	0	23	0.78
21353014--21353153	16	8.9	16	71	18	73	72	1	5	21	1.12
21353027--21353150	27	4.9	25	75	14	103	71	0	4	22	1.10
21353063--21353124	8	7.6	8	73	10	54	77	0	3	19	0.90
21353027--21353153	35	3.4	36	77	13	109	72	0	4	22	1.08
21353413--21353916	42	11.9	42	83	5	561	38	19	15	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113