genome.fa.s68.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  81  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17065492--17067927	890	2.7	878	78	8	1992	41	8	8	41	1.66
17067897--17068006	55	2.0	55	98	0	211	38	12	4	44	1.63
17067956--17068670	181	3.9	178	78	7	647	40	10	7	41	1.68
17070827--17071109	58	4.7	58	75	12	230	43	4	12	39	1.63
17070736--17070991	58	4.4	59	75	10	197	48	5	10	34	1.61
17070943--17071071	64	2.0	64	82	5	154	41	3	10	44	1.55
17075065--17075122	25	2.4	25	82	8	66	74	1	12	12	1.16
17076386--17076462	17	4.5	17	73	12	50	41	15	10	32	1.81
17076425--17076470	9	5.3	9	76	10	51	34	19	13	32	1.90
17076425--17076470	17	2.7	17	96	0	83	34	19	13	32	1.90
17076422--17076555	51	2.6	50	72	11	119	35	19	11	33	1.88
17076483--17076750	17	15.8	17	70	3	135	30	18	12	38	1.88
17076420--17076751	85	3.9	85	82	2	373	31	18	12	36	1.89
17076966--17077164	85	2.3	85	83	5	258	22	16	14	47	1.82
17078229--17078268	13	3.0	13	81	3	53	22	2	0	75	0.93
17078326--17078692	58	6.2	57	81	9	369	47	6	9	35	1.63
17078326--17078695	119	3.1	118	83	6	406	47	6	10	35	1.64
17078496--17078597	28	3.2	34	64	18	83	48	9	7	34	1.65
17079501--17079597	23	4.2	23	75	10	90	78	7	9	5	1.09
17079503--17079598	48	2.0	47	86	6	131	79	7	8	5	1.06
17089820--17089909	45	2.0	45	97	0	171	51	10	11	27	1.69
17089822--17089895	25	3.2	25	62	31	63	48	10	10	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17090490--17090563	30	2.5	31	78	10	91	41	6	1	50	1.37
17090954--17090984	6	5.2	6	96	0	53	32	54	0	12	1.38
17093973--17094009	2	18.5	2	100	0	74	48	0	0	51	1.00
17094411--17094896	261	1.9	258	92	1	819	36	10	12	40	1.78
17094987--17095030	23	1.9	23	85	0	61	40	2	4	52	1.34
17095112--17095147	17	2.2	17	95	5	65	27	0	0	72	0.85
17095105--17095158	24	2.2	24	90	6	83	33	0	0	66	0.92
17101196--17101324	43	2.9	44	95	2	224	24	3	20	50	1.65
17103762--17104037	137	2.0	136	91	0	444	36	17	10	35	1.84
17115862--17116694	414	2.0	416	92	0	1391	30	17	22	28	1.97
17122490--17122526	19	2.0	19	89	5	58	27	21	0	51	1.48
17128396--17128446	3	17.0	3	91	0	84	29	3	33	33	1.76
17143249--17143279	15	2.1	15	93	0	53	19	19	3	58	1.53
17147682--17147721	13	3.1	13	81	0	53	15	5	22	57	1.57
17147670--17147732	26	2.4	26	79	10	83	19	6	22	52	1.68
17147879--17147921	3	14.3	3	95	0	77	32	2	0	65	1.06
17148505--17148533	14	2.1	14	100	0	58	20	31	0	48	1.50
17150292--17150396	12	8.5	12	75	14	81	21	1	1	74	1.02
17150298--17150396	18	5.4	19	76	12	82	21	2	2	74	1.02
17150272--17150390	29	4.0	28	72	17	89	22	2	1	73	1.05
17150438--17150467	12	2.4	13	88	11	53	20	13	13	53	1.72
17151076--17151196	32	3.8	32	81	2	154	24	14	21	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17151076--17151196	64	1.9	64	86	3	172	24	14	21	39	1.90
17151170--17151224	28	2.0	27	82	3	65	27	16	21	34	1.95
17151208--17151291	32	2.6	32	76	3	87	39	17	14	28	1.89
17151496--17151622	61	2.1	59	79	2	137	35	13	17	33	1.89
17151638--17151680	22	2.0	22	90	0	68	30	27	18	23	1.98
17159060--17159097	17	2.3	17	86	4	51	42	2	0	55	1.14
17159069--17159111	17	2.6	16	82	10	50	39	2	0	58	1.11
17159182--17159267	37	2.2	38	82	10	95	38	4	1	55	1.28
17159571--17159622	20	2.5	20	81	3	59	73	3	1	21	1.10
17159776--17159826	18	2.7	18	77	14	50	45	3	5	45	1.46
17161490--17161680	99	1.9	99	92	0	319	25	12	4	57	1.54
17166652--17166706	22	2.4	23	82	14	69	41	0	1	56	1.10
17169455--17169636	63	2.9	61	78	9	186	34	12	10	42	1.76
17172465--17172498	17	2.0	17	100	0	68	41	5	41	11	1.66
17180885--17180980	34	2.9	33	78	7	106	48	10	4	36	1.57
17190513--17190543	2	15.5	2	100	0	62	51	0	0	48	1.00
17195230--17195274	5	9.4	5	77	18	51	77	0	22	0	0.76
17195232--17195274	23	1.9	22	90	4	68	79	0	20	0	0.74
17211979--17212032	3	18.0	3	96	0	99	31	0	1	66	1.02
17213040--17213066	1	27.0	1	100	0	54	0	0	0	100	0.00
17213923--17213988	6	11.0	6	80	6	71	66	4	0	28	1.11
17213919--17213976	18	3.2	18	85	4	80	68	3	0	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17213923--17213987	31	2.2	29	88	5	94	67	4	0	27	1.10
17215448--17215490	20	2.2	20	83	8	52	65	2	9	23	1.34
17216536--17216753	67	3.3	67	77	9	162	44	15	19	20	1.86
17216607--17216852	67	3.7	66	78	5	237	43	14	22	19	1.88
17217523--17217611	22	4.0	23	72	22	82	42	11	8	37	1.72
17217530--17217651	45	2.7	43	81	7	136	42	11	9	36	1.74
17218705--17218746	11	4.1	10	79	14	50	4	7	2	85	0.80
17218709--17218747	20	2.0	20	90	10	62	7	5	2	84	0.84
17219038--17219087	10	5.2	9	79	11	55	8	16	0	76	1.02
17219039--17219087	19	2.5	19	90	9	73	6	16	0	77	0.96
17219883--17219922	12	3.3	12	85	0	62	10	12	15	62	1.54
17219884--17219935	24	2.2	24	92	0	86	11	17	9	61	1.55
17224777--17224842	31	2.2	30	83	2	78	77	6	15	1	1.04
17226590--17226616	3	9.0	3	100	0	54	33	0	0	66	0.92
17226662--17226698	3	12.3	3	100	0	74	67	0	0	32	0.91
17226960--17226994	15	2.2	17	90	10	56	60	0	2	37	1.12
17227974--17228005	3	10.7	3	100	0	64	68	0	0	31	0.90
17228627--17228685	3	19.7	3	100	0	118	67	0	0	32	0.91
17229157--17229217	3	20.3	3	86	0	68	65	8	1	24	1.29
17234448--17234507	23	2.6	23	83	0	75	30	23	18	28	1.98
17234518--17234658	67	2.1	67	94	2	248	34	25	12	26	1.92
17234564--17234655	45	2.1	44	83	2	112	36	25	10	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17234518--17234658	22	6.3	22	72	6	104	34	25	12	26	1.92
17234734--17234824	45	2.0	46	86	2	130	30	20	17	30	1.96
17234734--17234809	23	3.3	23	72	3	73	30	22	17	30	1.96
17234762--17234824	23	2.7	23	77	0	72	30	22	19	28	1.98
17234867--17234949	23	3.6	23	80	0	94	33	21	13	31	1.92
17234741--17234924	100	1.8	100	80	4	219	32	18	16	32	1.93
17235377--17235421	23	2.0	23	95	0	81	35	33	6	24	1.82
17234950--17236277	352	3.9	330	86	8	1678	36	18	14	31	1.90
17236060--17236103	23	1.9	23	95	0	79	36	25	9	29	1.86
17236059--17236120	23	2.7	23	82	0	70	33	27	9	29	1.88
17234950--17236277	683	1.9	684	92	0	2221	36	18	14	31	1.90
17236329--17236384	23	2.4	23	84	0	76	33	30	10	25	1.90
17236776--17236969	50	3.9	49	76	14	175	35	13	13	37	1.84
17237057--17237166	17	6.7	15	77	16	78	76	6	0	16	1.04
17237092--17237161	17	4.2	17	83	7	81	78	7	0	14	0.95
17237109--17237222	9	12.9	9	73	17	78	74	11	0	14	1.07
17237057--17237177	26	4.8	26	72	13	85	76	7	0	14	1.04
17237158--17237287	11	11.9	11	71	13	63	75	13	0	10	1.09
17237157--17237273	46	2.7	43	77	15	114	75	14	0	10	1.05
17237213--17237286	5	13.8	5	74	17	60	77	13	1	8	1.06
17237192--17237302	48	2.4	47	82	10	131	76	12	0	9	1.06
17237092--17237261	63	2.8	61	77	12	165	75	11	0	12	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17237148--17237287	57	2.5	55	80	13	155	75	13	0	10	1.08
17237099--17237290	72	2.6	69	75	16	167	75	11	0	11	1.08
17237138--17237309	47	3.6	47	76	14	133	76	11	1	11	1.09
17238166--17238219	18	2.8	19	84	15	60	81	5	12	0	0.85
17238180--17238226	16	2.9	16	81	12	60	80	4	12	2	0.94
17238179--17238219	17	2.5	16	84	4	55	85	4	9	0	0.73
17240005--17240052	3	16.3	3	95	4	89	68	0	0	31	0.90
17240315--17240349	15	2.2	16	90	10	54	62	0	0	37	0.95
17240315--17240361	15	3.1	15	82	14	53	63	0	2	34	1.06
17240319--17240389	36	1.9	36	83	11	90	63	0	5	30	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113