genome.fa.s68.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  14  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4509107--4510010	58	15.3	58	74	14	522	34	9	5	50	1.58
4509395--4509734	169	2.0	168	85	8	460	31	7	6	53	1.55
4509668--4509906	126	1.9	126	89	5	376	29	9	7	53	1.59
4509725--4509858	67	2.0	66	84	7	173	26	8	7	57	1.54
4509350--4510037	111	5.9	115	76	12	362	31	8	6	53	1.56
4526326--4526365	21	1.9	21	100	0	80	10	17	40	32	1.83
4531528--4531582	27	2.0	27	96	0	101	25	3	20	50	1.64
4547348--4547389	13	3.2	13	83	9	50	61	4	0	33	1.17
4549406--4549447	19	2.1	21	86	8	61	26	4	2	66	1.23
4551996--4552068	31	2.3	32	81	11	87	49	1	2	46	1.24
4552474--4552541	29	2.3	29	82	5	84	52	1	5	39	1.34
4553874--4553914	8	5.6	8	78	21	54	24	21	0	53	1.46
4553879--4553914	14	2.6	14	100	0	72	22	22	0	55	1.44
4565712--4565752	17	2.4	18	80	12	50	41	4	2	51	1.36
4567422--4567482	27	2.3	27	85	5	79	32	39	11	16	1.84
4574135--4574208	31	2.4	31	81	2	96	45	0	10	43	1.39
4574152--4574228	31	2.5	31	85	6	93	49	0	14	36	1.43
4585008--4585051	22	2.0	23	90	4	72	63	15	6	13	1.49
4586446--4586478	16	2.2	16	89	10	52	57	0	36	6	1.23
4587190--4587237	14	3.3	14	73	21	53	47	0	0	52	1.00
4587194--4587254	30	2.0	30	81	12	72	44	4	0	50	1.23
4587369--4587413	24	2.0	23	83	16	58	26	6	0	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4588696--4588747	24	2.2	24	89	6	79	57	9	21	11	1.62
4592178--4592228	25	2.1	25	85	10	70	66	3	0	29	1.09
4593774--4593798	3	8.3	3	100	0	50	68	0	0	32	0.90
4601955--4601982	2	14.0	2	100	0	56	50	0	50	0	1.00
4612163--4612259	38	2.5	39	80	8	108	51	7	10	30	1.63
4615278--4615319	21	2.0	22	90	4	68	57	19	11	11	1.65
4631517--4631554	2	19.5	2	89	5	60	52	0	0	47	1.00
4636983--4637045	19	3.3	19	72	24	69	36	9	30	23	1.87
4636972--4637049	38	2.1	38	100	0	156	37	10	29	23	1.88
4649358--4649537	99	1.8	99	92	0	306	23	17	27	30	1.97
4649358--4649558	99	2.0	99	88	0	294	23	19	26	29	1.98
4650190--4650317	63	2.0	63	100	0	256	43	17	7	31	1.77
4651472--4651510	20	2.0	21	90	10	64	53	0	0	46	1.00
4652498--4652523	2	13.0	2	100	0	52	50	0	0	50	1.00
4655082--4655166	35	2.4	35	94	0	143	61	9	0	29	1.27
4655969--4656002	17	1.9	17	88	5	50	35	5	14	44	1.70
4658128--4658172	2	22.5	2	82	8	56	46	0	48	4	1.22
4658858--4658890	10	3.1	11	86	8	50	30	0	0	69	0.88
4691393--4691431	12	3.2	12	85	0	51	41	2	7	48	1.45
4702943--4703019	37	2.1	37	83	13	97	50	1	3	44	1.28
4705088--4705251	82	2.0	82	95	2	294	42	20	4	32	1.73
4708432--4708483	20	2.5	22	84	9	65	50	1	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4708448--4708495	20	2.3	20	79	10	53	56	0	0	43	0.99
4712142--4712169	2	14.0	2	100	0	56	0	50	0	50	1.00
4726434--4726690	138	1.9	138	95	0	469	31	18	14	35	1.91
4729788--4729827	18	2.3	18	87	8	57	65	2	0	32	1.06
4730046--4730085	3	13.3	3	94	0	53	27	0	40	32	1.57
4744587--4744645	27	2.2	27	81	6	66	30	11	33	23	1.91
4750724--4750762	19	2.0	19	85	5	51	58	2	2	35	1.25
4751004--4751046	7	5.9	7	84	10	59	81	2	2	13	0.89
4751004--4751046	15	2.9	15	83	10	61	81	2	2	13	0.89
4752353--4752405	24	2.3	22	81	9	61	39	0	0	60	0.97
4752363--4752413	16	3.3	15	79	15	50	45	0	0	54	0.99
4752406--4752448	19	2.4	18	85	11	54	48	0	0	51	1.00
4752422--4752511	25	3.7	25	72	20	84	52	0	0	47	1.00
4752362--4752512	57	2.8	53	73	15	137	49	0	0	50	1.00
4752436--4752502	15	4.3	15	73	16	64	53	0	0	46	1.00
4753025--4753168	70	2.0	73	87	5	213	50	11	8	30	1.67
4755004--4755047	22	2.1	20	84	16	54	11	4	6	77	1.11
4755072--4755118	17	2.9	17	84	6	53	51	0	8	40	1.33
4755181--4755218	19	2.0	19	89	0	58	60	2	0	36	1.11
4764255--4764283	2	14.5	2	100	0	58	51	48	0	0	1.00
4767914--4767949	18	1.9	19	88	5	56	36	16	5	41	1.72
4774057--4774103	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4775513--4775543	9	3.3	9	95	4	53	51	0	0	48	1.00
4775607--4775633	8	3.4	8	100	0	54	85	0	0	14	0.61
4782225--4782277	26	2.0	26	100	0	106	39	18	0	41	1.51
4792457--4792495	20	2.0	20	84	0	51	10	23	7	58	1.56
4798790--4798830	2	20.5	2	100	0	82	48	0	0	51	1.00
4799374--4799470	31	3.3	27	65	24	63	38	15	6	40	1.72
4799321--4799572	58	4.3	58	79	11	214	37	13	7	41	1.73
4799382--4799572	58	3.2	58	85	3	222	37	14	7	40	1.74
4799674--4799718	3	14.7	3	86	13	65	68	0	0	31	0.89
4799673--4799724	12	4.3	12	88	11	56	71	0	0	28	0.87
4800163--4800201	13	3.1	12	85	7	51	56	10	5	28	1.54
4800494--4800656	12	13.8	12	72	19	80	68	1	3	26	1.14
4800489--4800622	3	43.7	3	71	20	75	67	0	3	28	1.07
4800489--4800674	37	5.0	37	69	23	106	68	1	3	26	1.11
4800553--4800660	25	4.4	24	70	23	75	68	1	2	26	1.13
4800484--4800622	46	3.0	48	81	9	157	68	0	4	27	1.08
4800544--4800634	28	3.2	28	80	13	91	67	1	2	29	1.10
4800494--4800634	13	10.8	13	74	20	109	67	0	3	28	1.12
4800499--4800653	46	3.4	45	75	15	108	67	1	3	27	1.15
4800543--4800685	46	3.1	45	74	20	109	69	2	2	25	1.13
4800651--4800693	8	5.4	8	89	8	52	74	4	2	18	1.10
4800627--4800685	22	2.6	21	79	15	57	72	3	3	20	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4800651--4800695	15	2.9	15	81	12	54	73	4	2	20	1.11
4828160--4828185	2	13.0	2	100	0	52	0	50	0	50	1.00
4836266--4836299	17	1.9	17	88	5	50	50	0	2	47	1.16
4838118--4838172	29	1.9	29	85	10	78	29	0	5	65	1.15
4842152--4842185	2	17.0	2	93	0	59	50	2	0	47	1.16
4843068--4843165	30	3.3	29	66	17	74	42	1	2	54	1.19
4844996--4845115	62	1.9	62	81	6	145	46	3	5	44	1.44
4844995--4845135	62	2.3	62	78	7	144	49	4	5	40	1.46
4848271--4848305	18	1.9	18	88	0	52	5	17	0	77	0.96
4852414--4852472	30	2.0	30	89	0	91	38	6	6	47	1.57
4852590--4852639	21	2.4	21	83	6	66	62	4	2	32	1.25
4854464--4854500	18	2.0	19	85	15	51	51	10	32	5	1.60
4865129--4865196	33	2.1	32	94	2	118	41	7	0	51	1.30
4865183--4865249	23	2.8	25	80	11	77	43	1	0	55	1.09
4865217--4865278	25	2.5	24	84	10	72	45	0	3	51	1.17
4880791--4880815	2	12.5	2	100	0	50	52	0	0	48	1.00
4895605--4895761	52	3.0	52	86	1	217	40	8	25	26	1.83
4896337--4896418	25	3.4	24	73	9	69	31	8	37	21	1.84
4896293--4896397	50	2.1	50	82	7	124	35	9	35	20	1.85
4896636--4896675	11	3.6	11	86	0	62	25	0	25	50	1.50
4896702--4896827	52	2.4	52	89	2	182	42	9	21	26	1.83
4902999--4903031	17	1.9	17	93	0	57	39	3	6	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4904245--4904287	22	2.0	21	86	8	61	30	39	4	25	1.76
4906252--4906347	49	1.9	50	93	2	167	13	11	20	54	1.70
4919278--4919302	12	2.1	12	100	0	50	60	0	0	40	0.97
4922584--4922624	6	6.8	6	97	0	73	2	0	29	68	1.03
4925761--4925790	2	15.0	2	92	0	51	50	3	0	46	1.18
4928074--4928118	21	2.1	22	83	4	56	46	2	0	51	1.13
4928087--4928120	11	3.2	11	87	4	52	44	0	0	55	0.99
4928176--4928216	21	2.0	21	95	0	73	43	2	0	53	1.13
4932224--4932248	2	12.5	2	100	0	50	52	0	0	48	1.00
4935500--4935538	16	2.5	15	80	19	53	53	0	2	43	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113