genome.fa.s68.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  62  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14981445--14981496	11	4.3	12	79	13	54	32	0	1	65	1.04
14982468--14982503	13	2.7	13	86	4	54	16	0	2	80	0.83
14982469--14982501	17	1.9	17	93	0	57	15	0	3	81	0.80
14982529--14982596	15	4.3	15	75	14	66	13	7	1	77	1.03
14982578--14982619	22	1.9	22	85	9	59	14	11	2	71	1.24
14982632--14983089	57	7.8	58	85	8	588	45	8	12	34	1.71
14982634--14983089	119	3.9	117	86	7	613	45	7	12	34	1.71
14990862--14990906	20	2.2	20	88	4	63	8	31	0	60	1.28
14994969--14995001	12	2.8	12	90	0	57	84	0	9	6	0.76
14995034--14995080	12	4.2	11	78	10	51	85	2	10	2	0.78
14994969--14995144	79	2.3	74	80	11	185	65	9	14	10	1.46
14995461--14995516	21	2.8	19	82	12	67	75	7	14	3	1.16
14996399--14996611	114	1.9	114	85	2	293	24	25	13	35	1.93
14997536--14997597	5	12.6	5	77	16	67	20	1	0	77	0.85
14997536--14997600	24	2.7	23	90	7	94	20	3	0	76	0.91
14998466--14998537	16	4.3	16	73	15	65	16	4	2	76	1.06
14998588--14998630	20	2.3	19	92	8	70	83	0	11	4	0.78
14998656--14998702	24	2.0	24	83	8	60	53	4	0	42	1.20
14998685--14998733	14	3.6	14	77	20	50	55	10	0	34	1.34
14999489--14999543	26	2.2	25	83	3	65	70	10	7	10	1.32
14999863--14999901	19	2.0	20	90	5	62	69	2	0	28	1.02
15003333--15003384	18	2.8	18	85	8	70	26	3	0	69	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15003500--15003541	22	2.0	22	95	4	77	28	0	0	71	0.86
15003536--15003577	18	2.4	17	84	7	57	30	0	14	54	1.40
15004794--15004951	86	1.8	86	86	0	226	23	3	14	58	1.50
15006913--15006947	16	2.1	17	89	5	54	31	2	14	51	1.57
15007036--15007085	15	3.0	16	80	13	57	54	4	0	42	1.19
15007076--15007118	20	2.0	22	86	8	63	83	9	0	6	0.80
15007110--15007170	19	3.2	18	81	9	68	73	1	6	18	1.12
15008033--15008132	3	35.3	3	76	9	59	58	0	11	31	1.33
15008122--15008213	5	18.6	5	73	13	57	50	8	1	40	1.41
15008134--15008182	25	1.9	26	88	12	75	48	8	0	42	1.32
15008148--15008192	18	2.5	18	92	0	72	44	8	2	44	1.47
15008142--15008213	15	5.1	15	74	17	64	48	8	1	41	1.42
15009842--15009886	14	3.2	14	80	0	63	4	11	2	82	0.91
15009863--15009901	17	2.3	17	86	0	51	10	7	0	82	0.86
15009847--15009912	31	2.1	31	83	5	80	7	12	1	78	1.01
15010233--15010289	21	2.8	21	79	10	57	3	7	7	82	0.94
15011523--15011622	11	9.2	11	75	11	55	24	1	2	73	1.00
15011522--15011616	20	4.6	20	77	10	93	25	1	1	72	0.97
15011519--15011601	13	6.2	13	72	18	53	25	1	1	72	0.99
15011516--15011607	18	5.1	18	78	11	73	26	1	1	71	0.99
15011516--15011616	15	6.9	15	70	15	68	24	0	0	73	0.96
15012038--15012082	19	2.3	20	88	3	65	11	15	13	60	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15012531--15012678	58	2.5	59	84	8	183	51	5	6	36	1.51
15012665--15012785	56	2.2	56	85	8	158	48	5	14	31	1.67
15015286--15015326	5	7.6	5	84	15	55	19	0	2	78	0.87
15015369--15015727	58	6.1	57	80	10	314	47	5	10	35	1.62
15015413--15015591	55	3.0	58	78	14	195	47	5	11	35	1.63
15015406--15015713	117	2.6	114	81	7	316	48	6	10	35	1.63
15015622--15015656	17	1.9	19	88	11	56	40	11	2	45	1.55
15015700--15015731	14	2.4	14	94	5	57	62	3	0	34	1.11
15020308--15020384	34	2.2	35	82	11	97	23	9	6	61	1.50
15020469--15020510	19	2.3	19	91	4	68	80	2	2	14	0.90
15020437--15020511	35	2.2	34	83	11	91	77	4	4	14	1.06
15020822--15020860	21	1.9	21	89	5	62	41	10	15	33	1.81
15023094--15023144	2	26.0	2	90	4	77	47	1	1	49	1.24
15036632--15036665	13	2.6	13	85	0	50	82	0	11	5	0.83
15036700--15036744	16	2.7	17	83	10	58	82	8	8	0	0.85
15037120--15037175	21	2.8	20	86	5	76	76	7	10	5	1.14
15038423--15038741	174	1.8	173	82	2	406	26	26	13	33	1.93
15038447--15038783	174	1.9	174	80	3	392	26	26	13	34	1.93
15039099--15039181	13	6.1	13	76	9	58	37	3	4	54	1.39
15039153--15039226	3	24.3	3	75	13	55	29	4	4	62	1.32
15041298--15041387	43	2.1	43	89	4	139	24	15	24	35	1.94
15041394--15041451	1	58.0	1	78	0	62	89	10	0	0	0.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15041394--15041444	12	4.4	12	85	7	70	90	9	0	0	0.46
15041394--15041451	22	2.6	22	91	5	82	89	10	0	0	0.48
15041400--15041451	12	4.4	12	90	9	72	88	11	0	0	0.52
15041394--15041451	11	5.6	10	86	9	73	89	10	0	0	0.48
15041615--15041672	21	2.8	20	79	7	62	20	1	5	72	1.13
15041711--15041766	17	3.5	15	80	20	60	33	0	3	62	1.12
15042740--15042862	9	13.5	8	69	21	50	18	4	3	73	1.16
15042736--15042769	13	2.7	13	90	4	52	17	0	2	79	0.86
15042737--15042768	17	1.9	17	93	6	57	15	0	3	81	0.82
15042741--15042862	17	7.8	16	67	18	60	18	4	3	72	1.16
15042844--15042885	22	1.9	22	85	9	59	14	11	2	71	1.24
15042898--15043467	59	9.7	58	85	7	694	44	7	13	34	1.73
15042898--15043467	117	4.9	115	87	3	748	44	7	13	34	1.73
15042900--15043467	177	3.2	174	89	4	829	44	7	13	34	1.72
15044302--15044333	3	10.7	3	100	0	64	68	0	0	31	0.90
15044343--15044396	5	11.2	5	79	15	51	53	7	0	38	1.29
15053877--15053921	20	2.2	20	88	4	63	8	31	0	60	1.28
15057994--15058024	11	2.8	11	90	0	53	83	0	9	6	0.79
15058486--15058539	21	2.6	20	82	8	72	72	7	16	3	1.22
15059418--15059632	114	1.9	111	83	4	279	24	25	14	35	1.93
15059969--15060259	113	2.6	113	78	3	289	25	25	14	35	1.94
15060472--15060556	13	6.2	13	77	9	62	37	3	4	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15060526--15060602	3	25.3	3	73	19	54	31	3	2	62	1.27
15060566--15060598	7	5.0	7	92	7	52	30	0	0	69	0.88
15061464--15061527	23	2.7	24	78	11	69	15	3	4	76	1.08
15061580--15061622	21	2.1	21	91	8	72	83	0	11	4	0.78
15061648--15061694	24	2.0	24	83	8	60	53	4	0	42	1.20
15061677--15061725	14	3.6	14	77	20	50	55	10	0	34	1.34
15062543--15062569	4	6.8	4	100	0	54	77	0	0	22	0.76
15062859--15062901	19	2.2	20	87	4	61	69	4	0	25	1.07
15062883--15062911	15	1.9	15	100	0	58	68	10	0	20	1.18
15067352--15067509	86	1.8	86	84	0	217	24	3	14	58	1.51
15069667--15069709	15	2.8	16	82	6	54	72	6	4	16	1.24
15069698--15069742	18	2.5	18	82	10	56	75	2	4	17	1.07
15070606--15070706	3	35.3	3	75	9	68	59	0	9	30	1.30
15070607--15070693	25	3.3	25	73	14	77	59	0	9	31	1.28
15070696--15070790	5	18.0	5	71	17	50	51	7	1	40	1.37
15072844--15072917	3	24.3	3	74	15	55	62	4	4	29	1.32
15072925--15072964	13	3.1	13	88	0	53	52	5	2	40	1.37
15073404--15073521	60	2.0	60	84	3	157	36	16	25	22	1.94
15073827--15074042	113	1.9	113	81	3	265	34	14	25	24	1.94
15074909--15074964	21	2.6	21	85	2	85	1	16	8	73	1.17
15075279--15075312	9	3.6	9	88	11	50	0	14	0	85	0.60
15075351--15075388	18	2.2	16	90	9	58	0	7	2	89	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15075279--15075429	74	2.0	75	84	6	200	9	15	9	64	1.48
15075349--15075377	11	2.6	11	100	0	58	0	10	0	89	0.48
15075366--15075473	52	2.1	53	82	1	128	17	16	11	54	1.70
15079947--15080142	94	2.1	95	81	2	234	38	7	10	43	1.67
15086346--15086380	6	5.7	6	86	6	52	17	0	0	82	0.66
15086332--15086403	13	6.0	12	72	16	60	16	5	1	76	1.05
15086333--15086380	25	1.9	25	91	0	78	14	4	0	81	0.84
15086352--15086429	36	2.2	36	79	9	88	19	2	6	71	1.19
15090894--15090925	14	2.3	14	94	0	55	28	0	3	68	1.04
15090854--15091039	71	2.6	71	87	7	236	34	9	6	48	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113