genome.fa.s68.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  48  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12866516--12866540	2	12.5	2	100	0	50	48	0	0	52	1.00
12869355--12869454	49	2.0	49	86	0	137	38	6	11	45	1.64
12876213--12876245	2	16.5	2	100	0	66	48	0	0	51	1.00
12879377--12879458	29	2.8	29	83	3	92	35	9	1	53	1.42
12879377--12879462	30	2.9	29	84	3	100	34	9	1	54	1.40
12880000--12880027	13	2.2	13	100	0	56	42	0	0	57	0.99
12881542--12881605	33	1.9	34	83	3	85	39	7	18	34	1.80
12882211--12882241	16	1.9	16	93	0	53	38	0	0	61	0.96
12885477--12885528	2	26.0	2	92	0	86	53	0	46	0	1.00
12891919--12891951	15	2.1	16	88	5	50	78	3	15	3	0.99
12892330--12892412	29	2.8	29	85	5	94	48	0	2	49	1.14
12892431--12892472	20	2.1	20	91	8	68	57	0	0	42	0.99
12893316--12893373	24	2.4	25	85	2	73	50	1	3	44	1.29
12893347--12893377	16	1.9	16	93	0	53	48	0	3	48	1.17
12893712--12893761	19	2.7	19	81	9	59	54	2	0	44	1.11
12900902--12900981	9	8.3	9	71	13	61	53	2	1	42	1.22
12900897--12900931	11	3.2	11	83	0	52	51	2	0	45	1.16
12900939--12900978	21	1.9	21	89	0	62	62	2	0	35	1.09
12901135--12901181	21	2.2	21	85	7	60	38	4	4	53	1.40
12901266--12901301	10	3.6	10	92	0	63	41	0	0	58	0.98
12901267--12901303	11	3.5	11	89	10	60	40	0	0	59	0.97
12901364--12901428	19	3.5	19	74	16	73	35	0	6	58	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901360--12901436	36	2.2	36	88	6	113	33	1	5	59	1.28
12901462--12901506	17	2.6	17	85	3	54	33	2	2	62	1.20
12901540--12901590	19	2.6	20	81	9	61	39	1	1	56	1.22
12901761--12901802	20	2.1	20	82	8	50	50	4	7	38	1.51
12903684--12903712	3	9.7	3	100	0	58	31	0	0	68	0.89
12906113--12906175	27	2.3	27	84	10	76	60	3	3	33	1.28
12906810--12906853	14	3.1	14	80	3	52	61	2	0	36	1.09
12906790--12906853	28	2.3	27	81	7	74	54	1	0	43	1.09
12907058--12907147	9	10.2	9	68	25	50	55	1	1	42	1.14
12907113--12907265	60	2.5	59	78	8	155	45	1	3	49	1.29
12907132--12907261	21	6.7	19	69	18	81	44	1	3	50	1.26
12907135--12907241	29	3.9	27	74	15	85	43	1	3	50	1.30
12907164--12907265	39	2.6	37	80	10	123	46	0	1	50	1.19
12907046--12907288	4	61.0	4	64	25	63	50	1	2	46	1.23
12907295--12907357	13	4.9	13	76	18	53	47	3	1	47	1.27
12907273--12907333	27	2.3	25	81	13	61	50	1	1	45	1.21
12907863--12908026	82	2.0	82	89	0	247	35	9	17	37	1.82
12908454--12908503	14	3.7	14	87	10	61	56	0	0	44	0.99
12908444--12908500	26	2.2	25	81	6	69	54	1	0	43	1.10
12908454--12908503	12	4.1	12	82	12	57	56	0	0	44	0.99
12909350--12909379	10	3.1	10	95	4	53	36	0	0	63	0.95
12909352--12909381	9	3.2	9	95	4	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12914972--12915009	16	2.5	15	87	8	51	60	2	7	28	1.38
12915000--12915045	17	2.8	16	80	6	56	69	6	4	19	1.28
12916203--12916511	124	2.4	126	84	8	382	42	3	10	43	1.55
12917040--12917381	172	1.9	179	83	9	454	44	3	13	38	1.62
12917442--12917474	6	5.5	6	92	0	57	48	0	0	51	1.00
12917783--12917863	28	2.8	28	77	7	83	43	1	1	54	1.16
12917911--12917965	28	1.9	29	85	10	78	43	1	1	52	1.22
12917910--12917972	29	2.2	28	80	8	74	46	1	1	50	1.20
12917925--12917995	29	2.3	30	78	9	72	40	2	1	54	1.23
12923676--12923711	10	3.5	10	92	3	54	5	8	2	83	0.89
12934206--12934387	59	3.1	56	80	12	174	36	10	4	47	1.59
12934210--12934389	56	3.1	55	81	11	175	36	10	4	48	1.58
12935257--12935318	3	20.7	3	73	23	51	70	1	1	25	1.05
12935257--12935318	21	3.1	19	76	17	63	70	1	1	25	1.05
12935260--12935319	24	2.6	22	82	12	68	71	1	1	25	1.04
12935260--12935329	23	3.0	22	83	6	68	72	2	1	22	1.05
12936072--12936107	4	9.2	4	87	6	56	72	0	27	0	0.85
12936072--12936106	11	3.1	11	95	4	61	71	0	28	0	0.86
12937178--12937223	21	2.2	21	85	14	60	41	2	0	56	1.11
12939198--12939442	60	4.1	57	78	12	226	37	8	5	49	1.55
12939198--12939442	117	2.0	120	81	11	290	37	8	5	49	1.55
12940310--12940371	3	20.7	3	73	23	51	70	1	1	25	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12940313--12940372	24	2.6	22	82	12	68	71	1	1	25	1.04
12940313--12940382	23	3.0	22	83	6	68	72	2	1	22	1.05
12941129--12941164	4	9.2	4	87	6	56	72	0	27	0	0.85
12941129--12941163	11	3.1	11	95	4	61	71	0	28	0	0.86
12942242--12942287	21	2.2	21	85	14	60	41	2	0	56	1.11
12943085--12943123	19	2.1	19	85	9	53	35	2	5	56	1.35
12946940--12946992	25	2.1	25	82	6	63	49	1	5	43	1.37
12955453--12955500	23	2.2	21	86	13	71	35	8	8	47	1.64
12957833--12957886	24	2.2	25	77	6	67	64	7	0	27	1.20
12958337--12958386	20	2.7	18	77	14	57	40	8	16	36	1.77
12958389--12958431	18	2.4	18	88	0	59	46	2	9	41	1.48
12964280--12964417	59	2.3	58	80	10	138	52	2	2	42	1.28
12964514--12964579	23	3.0	23	76	12	68	53	1	0	45	1.09
12964540--12964581	9	4.6	9	82	14	50	59	0	0	40	0.97
12964604--12964698	21	4.4	20	72	15	73	45	2	3	49	1.29
12964660--12964725	27	2.4	27	80	14	66	46	3	6	43	1.43
12964766--12964797	16	2.0	16	100	0	64	43	18	6	31	1.75
12965523--12965566	2	22.0	2	90	0	61	47	0	4	47	1.22
12967694--12967729	17	2.1	17	94	0	63	33	36	11	19	1.87
12969296--12969412	3	39.3	3	76	17	102	63	0	3	33	1.11
12972445--12972496	12	4.5	11	84	13	61	26	1	1	69	1.10
12972455--12972520	12	5.4	12	75	13	64	33	1	0	65	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12972455--12972500	24	1.9	24	91	8	76	30	2	0	67	1.03
12972455--12972533	24	3.2	24	79	13	74	36	1	0	62	1.04
12972586--12972686	48	2.2	44	83	13	134	43	4	5	45	1.50
12972765--12972817	26	2.1	25	82	10	63	50	3	0	45	1.19
12973657--12973712	18	3.1	18	82	10	62	48	0	3	48	1.19
12973657--12973719	19	3.3	20	76	10	62	49	0	3	47	1.17
12974034--12974058	1	25.0	1	100	0	50	100	0	0	0	0.00
12975229--12975290	25	2.5	24	82	15	74	56	11	4	27	1.54
12975443--12975488	23	2.0	23	87	4	67	54	10	4	30	1.55
12975854--12975893	19	2.1	19	86	9	55	80	5	0	15	0.88
12975877--12975930	21	2.7	19	81	18	65	72	3	5	18	1.20
12976635--12976741	32	3.4	31	78	12	94	53	10	8	28	1.64
12977485--12977522	19	2.0	20	89	5	60	52	0	0	47	1.00
12980222--12980259	3	12.7	3	100	0	76	31	0	0	68	0.90
12981329--12981376	19	2.5	19	86	6	62	62	0	4	33	1.14
12982233--12982350	59	2.0	59	81	6	141	35	18	11	33	1.88
12991013--12991062	20	2.5	21	84	12	61	44	2	2	52	1.24
12991949--12991982	16	2.1	16	88	5	50	41	0	0	58	0.98
12993235--12993264	13	2.3	13	94	0	51	53	0	0	46	1.00
12993322--12993363	19	2.2	19	100	0	84	33	0	0	66	0.92
12993376--12993439	13	5.3	13	71	17	57	50	0	1	48	1.10
12993357--12993425	34	2.0	34	83	5	86	49	0	1	49	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12993381--12993423	21	2.0	22	95	4	79	46	0	2	51	1.13
12994838--12994893	16	3.4	16	74	11	51	28	0	3	67	1.07
12995599--12995646	14	3.4	14	78	16	53	2	2	16	79	0.93
12995598--12995659	29	2.1	29	81	0	70	6	1	17	74	1.11
12996051--12996103	27	1.9	28	81	11	65	69	1	16	11	1.26
12996101--12996141	3	13.7	3	100	0	82	68	0	0	31	0.90
12996370--12996554	51	3.6	50	86	5	255	37	23	11	26	1.90
12996361--12996549	101	1.9	100	88	1	288	38	22	12	26	1.89
12996546--12996659	49	2.4	47	83	5	149	35	24	13	26	1.92
12996649--12996695	24	2.0	24	91	0	76	38	34	8	19	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113