genome.fa.s68.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  105  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20626533--20626596	33	1.9	34	87	9	96	18	4	3	73	1.14
20629978--20630016	13	3.2	12	82	10	53	30	12	0	56	1.37
20630963--20631022	29	2.0	30	83	3	77	46	3	3	46	1.35
20632801--20632853	17	3.2	17	71	23	51	26	26	26	20	1.99
20633481--20633553	37	2.0	37	91	0	119	17	17	5	58	1.57
20633748--20633815	36	1.9	35	90	3	109	41	7	1	50	1.39
20634425--20634521	48	2.0	48	91	0	158	32	20	18	27	1.96
20634751--20634809	30	1.9	31	86	3	84	37	8	3	50	1.49
20634804--20634840	17	2.3	15	90	9	56	56	0	0	43	0.99
20634894--20634944	22	2.4	22	87	9	70	49	3	0	47	1.20
20635468--20635509	21	2.0	21	86	9	59	38	4	0	57	1.20
20635202--20635508	152	2.0	152	79	7	329	37	10	4	47	1.57
20635709--20635849	75	1.9	76	86	1	203	37	9	5	47	1.59
20636022--20636072	26	2.0	26	92	0	84	50	15	3	29	1.62
20636203--20636246	22	2.0	23	86	4	63	27	2	0	70	0.99
20636406--20636511	11	10.1	11	66	16	55	57	2	4	34	1.34
20636404--20636484	22	3.9	22	73	13	73	56	1	4	37	1.29
20636451--20636669	28	7.6	27	71	12	118	53	4	3	38	1.39
20636712--20636877	17	9.8	17	64	25	66	55	1	0	42	1.15
20636809--20636886	36	2.1	37	86	6	106	53	1	0	44	1.08
20636830--20636895	19	3.6	18	78	10	71	51	1	0	46	1.10
20636830--20636895	13	5.4	12	72	16	55	51	1	0	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20636727--20636900	30	5.7	30	71	15	99	54	2	0	42	1.17
20636830--20636895	6	10.8	6	75	12	55	51	1	0	46	1.10
20636927--20636984	20	2.8	20	84	2	71	46	3	5	44	1.42
20636966--20637157	41	4.7	40	70	14	135	46	2	2	48	1.27
20636900--20637145	21	11.9	21	75	8	193	45	2	3	47	1.35
20637107--20637166	25	2.3	25	85	8	75	46	3	0	50	1.18
20637121--20637166	13	3.4	14	76	11	51	47	2	0	50	1.13
20637117--20637175	15	4.1	15	72	16	52	45	1	0	52	1.10
20637125--20637176	18	2.9	18	75	13	54	44	1	0	53	1.11
20638395--20638424	3	10.0	3	100	0	60	66	0	0	33	0.92
20647919--20647953	18	1.9	18	88	11	54	0	5	5	88	0.63
20649114--20649168	28	2.0	27	85	3	74	32	1	9	56	1.41
20649595--20649704	44	2.5	44	77	1	114	38	9	7	45	1.64
20649580--20649763	22	8.4	21	69	10	75	37	7	8	46	1.62
20656067--20656137	29	2.4	29	78	4	79	49	1	5	43	1.35
20661788--20661836	10	5.0	10	79	18	50	61	0	0	38	0.96
20661788--20661836	20	2.5	20	80	12	57	61	0	0	38	0.96
20662450--20662487	19	2.1	18	90	5	58	44	0	5	50	1.24
20662454--20662538	42	2.0	42	84	11	109	49	1	3	45	1.26
20663472--20663501	2	15.0	2	92	0	51	0	0	46	53	1.00
20663792--20663834	21	2.1	21	86	4	61	46	4	2	46	1.36
20668067--20668103	18	2.0	20	84	10	51	27	0	0	72	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20668239--20668445	8	25.5	8	66	19	67	35	3	4	56	1.39
20668242--20668445	5	39.8	5	67	22	88	35	3	4	55	1.40
20668265--20668366	24	4.2	24	79	12	84	35	0	7	55	1.35
20668283--20668439	13	12.5	12	70	17	81	36	2	4	56	1.33
20668323--20668442	3	44.7	3	66	21	52	35	2	4	57	1.31
20668239--20668444	11	19.1	10	67	22	68	35	3	4	55	1.39
20669349--20669390	21	2.0	21	86	9	59	33	7	7	52	1.56
20683684--20683795	41	2.5	42	84	9	127	64	0	5	29	1.22
20683755--20683912	27	5.8	27	77	14	128	66	0	3	29	1.14
20683714--20683912	52	4.1	48	79	14	178	66	0	4	28	1.13
20683731--20683877	50	2.9	48	78	17	174	64	0	4	29	1.19
20683835--20683915	31	2.5	31	86	4	99	71	0	3	24	1.02
20683889--20683922	13	2.5	13	95	4	59	82	0	0	17	0.67
20684082--20684114	5	6.8	5	86	6	50	0	0	15	84	0.61
20684140--20684645	44	11.5	43	83	2	501	42	19	14	22	1.88
20684139--20684665	87	6.0	87	84	3	540	43	19	14	23	1.87
20686286--20686341	9	5.7	10	77	12	62	12	10	1	75	1.14
20687202--20687247	19	2.4	19	96	0	83	50	26	2	21	1.60
20691562--20691607	24	1.9	24	95	0	83	8	21	17	52	1.71
20692139--20692283	27	5.4	29	68	22	84	66	1	4	27	1.20
20692140--20692233	27	3.7	26	81	12	115	69	1	4	25	1.13
20692144--20692333	50	3.8	49	80	13	192	66	1	2	29	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20694550--20694688	50	2.8	50	82	2	172	31	8	19	40	1.82
20694717--20694980	49	5.4	49	72	13	168	29	14	17	37	1.90
20694564--20695023	144	3.2	145	79	7	481	29	13	17	38	1.88
20696851--20696888	8	4.8	8	90	9	60	78	0	0	21	0.74
20699816--20699860	2	22.5	2	90	0	63	51	4	0	44	1.21
20701309--20701342	8	4.2	8	85	14	52	70	0	0	29	0.87
20705466--20705498	13	2.4	14	90	5	50	45	6	15	33	1.70
20706888--20707119	24	9.5	24	77	9	202	35	5	17	41	1.73
20706888--20707119	51	4.8	48	77	11	195	35	5	17	41	1.73
20706888--20707095	75	2.8	74	89	3	303	35	5	16	42	1.71
20707026--20707119	45	2.1	45	86	4	127	36	6	17	40	1.75
20707563--20707602	18	2.2	18	90	0	62	37	7	17	37	1.78
20707606--20707636	16	1.9	16	93	0	53	19	19	19	41	1.90
20707720--20707877	83	1.9	83	97	0	298	31	6	20	41	1.79
20708871--20708917	4	11.8	4	77	8	51	19	0	8	72	1.10
20708870--20708915	16	2.9	16	80	9	58	19	0	8	71	1.11
20708954--20708985	16	2.0	16	93	0	55	78	0	0	21	0.76
20710971--20710999	14	2.0	15	93	6	51	3	34	0	62	1.12
20713651--20713709	28	2.1	29	90	3	93	37	6	11	44	1.68
20714273--20714300	2	14.0	2	100	0	56	50	0	0	50	1.00
20721552--20721590	19	2.1	19	85	0	51	51	2	0	46	1.14
20721624--20721687	25	2.6	26	73	14	64	60	1	3	34	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20723152--20723176	7	3.6	7	100	0	50	36	0	0	64	0.94
20723172--20723210	13	3.0	13	80	0	51	41	0	0	58	0.98
20723247--20723289	18	2.4	18	92	0	68	65	0	0	34	0.93
20724055--20724105	7	7.6	7	80	8	52	68	3	13	13	1.34
20725155--20725198	21	2.1	21	86	0	61	38	4	11	45	1.61
20725208--20725262	24	2.4	24	85	8	71	29	9	14	47	1.75
20726562--20726609	21	2.3	21	85	0	69	22	4	12	60	1.49
20729193--20729308	38	3.3	38	69	22	124	25	6	18	50	1.71
20729175--20729312	68	2.0	68	97	0	258	25	7	16	50	1.72
20731316--20731428	24	5.0	22	67	8	73	32	6	19	41	1.76
20731280--20731429	46	3.3	46	78	2	133	34	6	20	38	1.79
20731644--20731713	35	1.9	38	82	8	92	38	11	14	35	1.82
20731848--20731891	18	2.4	18	88	0	61	43	9	6	40	1.63
20731902--20731940	16	2.4	17	91	4	62	33	10	15	41	1.81
20732642--20732704	23	2.6	24	92	5	101	74	7	4	12	1.19
20732659--20732692	17	1.9	18	94	5	61	73	8	5	11	1.24
20733710--20733738	3	9.7	3	100	0	58	31	0	0	68	0.89
20734822--20735276	147	2.9	162	75	14	433	24	7	10	57	1.58
20736675--20736712	7	5.4	7	87	12	60	71	0	2	26	1.00
20736674--20736712	15	2.8	13	85	14	60	71	0	2	25	0.98
20739179--20739215	16	2.4	15	86	8	56	8	5	2	83	0.88
20745084--20745150	21	3.1	21	75	12	73	29	7	13	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20745075--20745139	22	3.0	22	78	10	80	32	9	15	43	1.78
20745075--20745218	44	3.3	44	82	0	173	33	9	12	44	1.75
20745233--20745365	46	2.9	46	80	3	144	37	6	15	41	1.71
20745863--20745902	17	2.3	18	87	8	57	25	2	15	57	1.50
20746027--20746180	65	2.3	66	80	1	166	22	22	11	43	1.85
20749611--20749871	97	2.7	97	78	5	262	40	9	10	39	1.72
20752913--20752967	21	2.6	22	77	13	62	29	32	18	20	1.96
20758337--20758514	73	2.4	72	81	2	212	30	23	23	23	1.99
20760301--20760339	20	2.0	20	100	0	78	28	0	20	51	1.48
20764339--20764377	20	2.0	20	94	0	69	28	2	20	48	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113