genome.fa.s68.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  85  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17770801--17770849	20	2.5	20	83	3	64	67	0	28	4	1.09
17773069--17773127	20	3.0	20	82	0	73	27	13	23	35	1.92
17773487--17773543	30	1.9	30	82	13	73	33	3	0	63	1.12
17773740--17773799	21	2.9	21	75	9	59	51	1	6	40	1.38
17774356--17774441	39	2.2	39	83	2	120	36	17	8	38	1.79
17775215--17775247	15	2.1	16	88	5	50	66	18	9	6	1.40
17776206--17776261	2	28.5	2	92	3	78	44	0	5	50	1.25
17777768--17777810	15	2.8	15	78	3	50	72	4	0	23	1.04
17778573--17778635	29	2.2	29	94	0	108	38	9	0	52	1.34
17778580--17778633	14	3.8	14	76	9	56	35	9	0	55	1.32
17783278--17783317	14	2.8	14	88	3	53	85	0	10	5	0.75
17783274--17783320	8	5.8	8	82	12	60	82	0	12	4	0.80
17787217--17787271	14	4.0	14	72	11	51	47	1	0	50	1.11
17788648--17788695	25	2.0	24	87	4	69	54	8	8	29	1.60
17789937--17789966	11	2.6	11	94	5	51	60	0	0	40	0.97
17790191--17790278	29	3.1	28	78	12	99	36	7	0	55	1.29
17790197--17790280	10	8.9	9	75	11	53	35	7	0	57	1.26
17790974--17791008	6	5.8	6	96	0	52	25	57	0	17	1.40
17796588--17796614	14	1.9	14	100	0	54	25	22	0	51	1.48
17799122--17799188	30	2.2	30	81	5	73	58	4	1	35	1.28
17799800--17799837	18	2.1	19	85	9	53	31	0	0	68	0.90
17799990--17800038	15	3.2	15	75	13	55	55	6	2	36	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17800460--17800570	58	1.9	59	90	1	179	50	11	11	26	1.73
17801332--17801378	24	2.0	24	87	8	69	48	4	10	36	1.57
17801626--17801661	11	3.3	11	92	0	63	55	8	2	33	1.44
17801962--17801987	13	2.0	13	100	0	52	69	0	0	30	0.89
17802566--17802612	24	2.0	25	87	8	71	46	4	10	38	1.58
17802948--17803025	21	3.8	21	67	14	63	29	25	23	21	1.99
17808880--17809025	74	2.0	74	86	1	204	35	15	21	26	1.94
17811574--17811625	20	2.6	20	100	0	104	26	26	23	23	2.00
17814693--17814774	33	2.4	35	82	10	98	29	4	6	59	1.42
17814779--17814822	3	14.0	3	90	9	70	63	0	4	31	1.14
17815440--17815557	50	2.4	50	80	4	134	36	17	11	34	1.85
17816251--17816462	86	2.5	86	80	6	223	39	12	18	29	1.88
17816383--17816701	69	4.6	69	83	3	347	40	13	18	27	1.88
17816392--17816697	138	2.2	136	85	2	405	39	13	19	28	1.89
17816615--17816781	86	1.9	87	83	6	214	39	10	17	32	1.84
17816797--17816867	17	4.2	17	83	0	79	36	14	25	23	1.92
17817833--17817878	24	2.0	23	86	4	65	8	6	4	80	1.01
17818216--17818247	7	4.2	8	88	11	50	9	12	0	78	0.97
17818215--17818247	15	2.3	15	94	5	59	12	12	0	75	1.04
17821842--17821891	19	2.6	17	82	17	55	76	4	6	14	1.13
17822420--17822550	47	2.7	48	77	5	131	35	17	9	37	1.83
17830917--17831397	43	11.1	44	75	5	291	27	12	15	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17830917--17831281	87	4.2	86	79	3	268	27	11	15	46	1.80
17830953--17831237	87	3.3	85	81	2	282	28	11	14	45	1.80
17833525--17833609	20	4.2	20	74	15	70	71	2	4	21	1.15
17834415--17834542	3	45.3	3	70	22	91	60	1	1	36	1.16
17834416--17834542	14	8.4	15	75	18	113	59	1	1	37	1.16
17834416--17834567	5	31.2	5	74	20	110	57	2	1	38	1.24
17834415--17834567	55	2.7	55	81	10	159	57	2	1	37	1.24
17842111--17842146	6	5.7	6	90	9	54	47	16	0	36	1.47
17842171--17842207	19	1.9	19	100	0	74	32	10	21	35	1.88
17848674--17849282	186	3.3	185	84	4	780	38	12	14	34	1.84
17849136--17849379	124	2.0	124	89	0	371	38	11	13	36	1.81
17848954--17849598	310	2.1	311	86	4	921	38	12	14	34	1.85
17849122--17849406	124	2.3	124	85	2	358	38	12	14	35	1.83
17851930--17851971	21	2.0	21	85	4	57	33	11	21	33	1.90
17853565--17853597	17	1.9	17	93	0	57	33	12	18	36	1.88
17853594--17853659	17	3.9	17	85	0	87	39	13	25	21	1.90
17854923--17854961	11	3.7	10	80	12	51	2	10	2	84	0.81
17854924--17854960	19	1.9	19	88	0	56	2	10	2	83	0.84
17858651--17858700	19	2.6	17	82	17	55	76	4	6	14	1.13
17859213--17859355	51	2.9	51	80	4	150	34	18	9	37	1.84
17866625--17866651	13	2.1	13	100	0	54	92	0	7	0	0.38
17867666--17868147	44	11.1	44	76	3	294	26	13	15	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17867666--17868034	87	4.2	87	79	4	258	27	12	14	46	1.80
17868009--17868134	43	2.9	43	80	3	128	23	15	19	42	1.89
17870261--17870342	13	6.2	12	73	20	58	71	3	3	20	1.16
17870314--17870356	19	2.2	20	84	12	54	74	0	6	18	1.04
17871143--17871253	3	38.3	3	70	18	76	59	1	2	36	1.22
17871142--17871253	14	7.6	14	67	21	52	59	1	2	35	1.22
17871147--17871276	5	25.8	5	74	18	76	56	3	3	37	1.31
17871157--17871238	34	2.6	32	85	11	116	57	2	2	37	1.25
17871143--17871253	25	4.4	25	78	13	113	59	1	2	36	1.22
17871143--17871245	11	9.6	11	72	20	85	59	1	2	35	1.24
17871157--17871275	11	12.6	10	70	18	51	54	3	3	38	1.34
17878462--17878494	16	2.1	16	100	0	66	39	12	18	30	1.87
17879310--17879350	19	2.2	19	95	0	73	34	17	17	31	1.93
17885314--17885383	35	2.0	35	88	0	104	37	15	14	32	1.88
17885709--17886501	186	4.4	186	82	4	897	37	11	15	35	1.84
17890863--17890922	27	2.2	28	93	6	113	30	16	6	46	1.73
17894496--17894528	1	33.0	1	100	0	66	100	0	0	0	0.00
17894813--17894862	19	2.7	20	73	17	54	50	10	6	34	1.60
17897795--17897837	20	2.2	20	100	0	86	51	0	0	48	1.00
17897797--17897842	20	2.4	19	92	7	76	47	0	0	52	1.00
17900893--17900929	16	2.2	18	85	9	51	29	0	2	67	1.04
17903154--17903201	23	2.0	23	84	4	60	62	2	4	31	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17903401--17903467	34	1.9	35	84	3	91	35	11	5	46	1.65
17903644--17903670	12	2.2	12	100	0	54	55	22	0	22	1.44
17905169--17905227	24	2.5	24	88	0	82	52	16	6	23	1.68
17905275--17905304	13	2.2	14	94	5	53	60	13	6	20	1.55
17905274--17905307	14	2.6	13	86	13	52	55	14	5	23	1.61
17905294--17905383	20	4.7	20	80	12	109	46	12	5	35	1.65
17905563--17905609	18	2.6	18	82	3	67	80	4	0	14	0.85
17905567--17905630	30	2.1	30	85	5	85	78	4	4	12	1.07
17907269--17907424	77	2.0	77	98	0	303	33	15	14	36	1.87
17907771--17907862	40	2.4	38	81	13	107	52	26	4	17	1.63
17908352--17908405	19	2.8	19	80	2	54	9	3	7	79	1.03
17908720--17909006	76	3.7	77	76	8	237	38	19	11	31	1.86
17908720--17908890	38	4.5	38	81	0	171	36	17	12	33	1.87
17908720--17908979	38	6.7	39	78	3	136	37	19	11	31	1.87
17908915--17909028	39	3.0	37	84	7	124	42	21	9	26	1.84
17908916--17909038	37	3.3	36	84	6	122	43	20	11	25	1.85
17915825--17915855	16	1.9	16	93	0	53	32	9	25	32	1.88
17915902--17915979	41	2.0	40	84	5	104	50	10	15	24	1.75
17916984--17917076	32	2.8	32	86	6	123	50	17	8	23	1.73
17916948--17917076	68	1.9	68	85	0	177	51	16	7	24	1.70
17916937--17917076	36	4.0	36	83	7	171	51	16	7	24	1.71
17917161--17917241	20	4.2	19	83	1	63	48	12	6	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17917186--17917241	20	2.8	20	91	0	94	50	12	1	35	1.51
17917283--17917320	20	1.9	20	94	0	67	44	10	7	36	1.68
17917310--17917400	43	2.0	43	81	12	103	51	7	6	34	1.56
17917442--17917476	18	1.9	18	88	0	52	71	8	0	20	1.11
17917443--17917499	18	3.2	17	80	9	51	73	7	1	17	1.14
17917471--17917519	19	2.5	19	90	3	71	73	6	4	16	1.19
17918425--17918450	11	2.4	11	100	0	52	0	0	7	92	0.39
17918438--17918479	16	2.6	17	81	11	61	9	4	9	76	1.15
17918537--17918570	9	3.9	9	96	3	61	76	0	0	23	0.79
17919615--17919658	21	2.1	20	84	16	54	22	0	18	59	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113