genome.fa.s68.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  100  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20031546--20033367	161	11.3	161	80	5	1731	32	9	15	42	1.79
20031549--20033379	810	2.3	799	82	4	2211	32	9	15	42	1.79
20031545--20033353	649	2.8	641	81	4	2133	32	9	15	42	1.79
20034474--20034547	34	2.2	34	82	0	94	35	20	10	33	1.87
20037335--20037384	19	2.7	18	77	14	57	52	2	0	46	1.12
20038914--20038965	20	2.6	20	74	17	54	50	3	3	42	1.39
20039692--20039726	9	3.7	10	92	7	56	40	17	0	42	1.49
20042979--20043063	44	1.9	44	85	4	118	30	8	15	45	1.75
20043040--20043151	42	2.7	43	77	6	122	35	8	15	41	1.76
20043583--20043996	84	4.9	83	77	7	381	30	13	16	38	1.88
20043626--20044010	168	2.3	168	81	1	450	30	13	17	38	1.88
20044471--20044528	18	3.2	17	78	9	53	15	5	5	74	1.18
20045202--20045516	101	3.1	101	84	2	389	44	8	9	37	1.69
20046689--20046740	21	2.4	21	81	9	61	30	25	1	42	1.66
20050361--20050411	8	6.6	8	74	17	54	82	1	13	1	0.85
20050363--20050411	13	3.8	13	79	12	57	81	2	14	2	0.87
20050361--20050409	21	2.3	21	89	3	71	81	2	14	2	0.87
20051078--20051289	119	1.8	119	86	4	315	36	12	15	35	1.85
20051373--20051405	2	16.5	2	100	0	66	48	0	0	51	1.00
20052144--20052256	45	2.5	46	78	4	122	36	7	15	40	1.76
20052101--20052298	22	8.8	22	68	8	103	34	6	14	44	1.71
20052215--20052304	23	3.9	23	76	4	76	35	3	12	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20052227--20052315	44	2.0	44	82	8	110	34	3	13	48	1.59
20052589--20052727	34	4.1	34	77	3	145	35	17	12	33	1.88
20052583--20052837	17	15.2	17	67	11	105	34	18	12	35	1.88
20052599--20052727	51	2.5	52	72	13	131	34	17	12	34	1.88
20053155--20053380	84	2.7	82	80	7	240	32	17	15	34	1.91
20054381--20054700	98	3.2	96	82	7	399	44	6	9	40	1.63
20054381--20054695	100	3.2	99	82	6	388	43	6	9	40	1.63
20057014--20057201	101	1.9	101	82	6	238	55	9	15	19	1.66
20057564--20057746	28	6.6	28	73	2	109	44	14	10	30	1.80
20060480--20060510	14	2.2	14	94	0	53	12	3	3	80	0.95
20061550--20061814	112	2.4	111	77	11	274	52	13	12	21	1.74
20061855--20061991	28	4.9	28	81	11	149	45	12	7	34	1.69
20065155--20065184	2	15.0	2	100	0	60	50	0	0	50	1.00
20068038--20068064	12	2.2	12	100	0	54	55	14	7	22	1.64
20073333--20073373	21	2.0	21	90	0	64	48	2	2	46	1.28
20073871--20073916	20	2.3	19	85	7	56	36	13	10	39	1.79
20074995--20075064	35	2.1	32	82	12	79	45	0	10	44	1.37
20077175--20077204	13	2.3	13	88	0	51	26	0	0	73	0.84
20077176--20077228	27	1.9	28	84	3	72	30	0	1	67	1.01
20079615--20079671	25	2.2	26	82	14	66	28	1	1	68	1.09
20080760--20080789	9	3.4	9	90	9	53	43	10	0	46	1.37
20080848--20080898	21	2.4	22	81	15	63	35	7	0	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20088301--20088334	15	2.3	15	100	0	68	55	14	11	17	1.68
20089545--20089713	61	2.8	60	71	11	146	37	13	13	34	1.84
20089352--20089713	122	2.9	122	76	8	392	35	13	13	37	1.84
20089619--20089803	90	2.1	88	83	3	228	38	15	10	35	1.82
20092021--20092054	17	1.9	18	88	5	52	55	2	29	11	1.50
20094096--20094135	20	2.0	21	85	5	55	17	7	20	55	1.66
20094133--20094163	15	2.1	15	94	5	55	29	0	6	64	1.18
20099418--20099448	16	1.9	16	93	0	53	45	3	19	32	1.66
20099893--20100042	18	8.5	18	68	10	67	39	10	10	39	1.75
20099912--20100042	70	1.9	70	80	0	154	39	10	11	38	1.76
20105353--20105432	27	3.1	26	80	10	92	21	37	11	30	1.88
20106306--20106365	19	3.1	19	71	20	61	8	1	66	23	1.28
20106306--20106448	50	3.4	39	75	20	126	12	0	62	23	1.34
20106314--20106415	50	2.0	50	92	0	168	10	0	62	25	1.34
20106364--20106448	40	2.2	39	89	6	127	15	0	61	23	1.34
20106682--20106719	20	2.0	20	89	5	60	34	0	5	60	1.19
20106945--20106993	25	1.9	26	91	4	82	46	2	10	40	1.49
20110399--20110435	6	6.2	6	90	0	56	21	0	48	29	1.50
20110398--20110433	18	2.0	18	94	0	63	25	0	47	27	1.52
20110779--20110903	18	6.9	18	73	13	105	31	35	5	28	1.80
20110784--20110824	21	2.0	21	95	0	73	26	39	2	31	1.70
20110807--20110904	33	2.9	33	83	4	124	34	32	6	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20118798--20120636	161	11.5	161	79	5	1590	32	8	15	43	1.77
20118798--20120592	472	3.8	472	80	5	1800	32	8	15	43	1.77
20121617--20121654	19	2.0	19	89	0	58	23	7	5	63	1.42
20121741--20121813	34	2.2	34	82	2	94	35	20	9	34	1.85
20125736--20125803	30	2.3	30	84	5	84	39	8	1	50	1.43
20125750--20125806	30	1.9	30	92	0	96	42	7	0	50	1.29
20126939--20126973	9	3.7	10	92	7	56	40	17	0	42	1.49
20141866--20141917	27	1.9	27	88	0	77	11	9	32	46	1.73
20147780--20148568	48	16.1	48	79	9	735	37	22	12	27	1.91
20147783--20148565	97	8.0	96	80	9	766	37	22	13	27	1.91
20148371--20148512	50	2.7	53	78	11	175	40	22	11	26	1.87
20152662--20152714	3	17.7	3	81	14	65	32	0	0	67	0.91
20152654--20152714	20	3.0	20	81	18	72	32	0	0	67	0.91
20152665--20152714	11	4.8	10	81	18	66	32	0	0	68	0.90
20153121--20153173	25	2.1	25	82	6	63	39	5	18	35	1.75
20153266--20153305	20	2.0	20	95	0	71	42	30	20	7	1.79
20153755--20153800	11	4.3	11	78	13	51	15	6	0	78	0.95
20153754--20153823	6	11.7	6	75	15	56	17	5	0	77	0.96
20153754--20153823	17	3.9	17	78	14	70	17	5	0	77	0.96
20153744--20153828	32	2.7	31	78	14	93	18	7	0	74	1.04
20153714--20153823	14	7.1	14	70	18	53	20	4	2	71	1.16
20153833--20154008	59	3.0	60	84	10	245	45	7	13	34	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20154042--20154068	14	1.9	14	100	0	54	14	0	7	77	0.97
20157884--20157938	17	3.2	17	89	7	76	83	0	14	1	0.73
20157890--20157946	12	4.5	12	77	12	60	82	0	15	1	0.75
20157884--20157938	8	6.4	8	80	15	65	83	0	14	1	0.73
20157906--20157967	30	2.2	27	85	8	79	77	0	17	4	0.94
20159181--20159326	42	3.4	43	93	2	242	21	20	23	34	1.97
20159160--20159326	42	4.0	41	90	6	239	21	20	22	35	1.96
20159339--20159456	8	14.6	8	86	9	136	84	11	0	2	0.76
20159346--20159456	9	12.6	9	84	10	115	84	12	0	1	0.75
20159334--20159456	44	2.8	43	84	11	151	84	11	0	3	0.78
20159333--20159448	1	116.0	1	70	0	79	85	11	0	3	0.72
20159696--20159756	3	19.7	3	93	6	88	31	0	0	68	0.89
20159688--20159756	23	3.0	23	85	14	97	31	0	0	68	0.90
20159818--20159851	18	1.9	18	94	5	61	14	8	5	70	1.31
20160160--20160212	25	2.1	25	82	6	63	39	5	18	35	1.75
20160305--20160344	20	2.0	20	95	0	71	42	30	20	7	1.79
20160346--20160376	11	2.8	11	100	0	62	19	6	29	45	1.75
20160788--20160867	6	12.7	6	72	22	58	15	5	1	78	0.98
20160877--20161052	59	2.9	59	86	10	234	46	8	11	32	1.71
20170969--20171051	10	8.0	10	73	11	60	12	1	8	78	1.02
20170972--20171071	12	8.6	12	70	23	63	15	2	7	76	1.09
20170988--20171051	31	2.1	30	91	2	101	14	0	9	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20171018--20171071	26	2.2	24	86	6	72	18	1	5	74	1.11
20171189--20171583	65	6.0	67	76	5	349	28	14	21	35	1.93
20171189--20171574	33	11.7	33	70	7	210	27	14	21	36	1.93
20171211--20171558	98	3.5	97	73	4	286	27	14	21	35	1.93
20172232--20172296	17	3.8	17	74	9	53	3	15	1	80	0.92
20172231--20172312	21	3.7	21	78	4	74	2	15	2	79	0.95
20172637--20172674	7	5.7	7	87	12	53	0	0	18	81	0.69
20172633--20172679	12	3.8	12	86	10	67	0	0	14	85	0.61
20172636--20172686	7	7.6	7	84	8	52	1	0	15	82	0.76
20172633--20172686	13	4.2	13	80	0	63	1	0	14	83	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113