genome.fa.s68.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  73  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16529354--16529650	148	2.0	148	80	3	339	41	8	8	42	1.65
16529510--16529841	179	1.9	179	82	7	424	43	8	8	39	1.65
16530024--16530062	13	3.2	13	82	14	55	43	0	2	53	1.14
16530244--16530279	17	2.1	17	94	0	63	50	0	0	50	1.00
16530420--16530499	32	2.5	32	97	2	153	41	2	7	48	1.45
16530401--16530512	15	7.3	15	69	28	67	43	1	6	48	1.38
16530801--16530869	31	2.3	31	82	10	88	44	2	0	52	1.16
16531279--16531334	22	2.6	23	83	8	64	57	1	0	41	1.09
16531296--16531353	22	2.5	22	80	8	62	55	0	0	44	0.99
16531574--16531609	11	3.1	11	88	11	54	47	0	0	52	1.00
16531573--16531614	13	3.4	13	78	21	54	50	0	0	50	1.00
16531740--16532401	180	3.8	171	74	11	493	39	6	10	43	1.64
16532766--16532794	9	3.3	9	95	4	51	48	0	6	44	1.29
16535241--16537727	180	13.9	181	75	5	1746	40	7	10	41	1.68
16535241--16537712	361	6.9	359	76	7	1695	40	7	10	41	1.68
16537476--16537513	19	2.1	18	90	5	58	26	0	0	73	0.83
16537950--16537997	18	2.7	19	81	12	66	43	10	2	43	1.50
16537956--16538591	181	3.5	180	79	4	635	38	11	8	41	1.72
16538322--16538897	300	1.9	301	83	1	751	38	11	8	41	1.73
16538594--16539856	181	7.0	181	79	3	1149	41	10	8	39	1.69
16538138--16539078	481	2.0	482	82	1	1163	38	12	8	40	1.74
16540066--16540103	18	2.1	19	85	5	51	50	10	0	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16540097--16540126	11	2.7	11	100	0	60	40	6	6	46	1.56
16540506--16540569	13	5.1	13	78	14	55	46	0	1	51	1.10
16540513--16540564	23	2.2	25	80	16	65	44	0	1	53	1.11
16541067--16541124	23	2.6	23	79	17	68	48	1	0	50	1.11
16541188--16541244	17	3.2	18	72	20	57	49	1	0	49	1.11
16541181--16541277	29	3.2	29	72	21	83	45	1	1	52	1.14
16541546--16541602	25	2.3	25	79	8	64	47	0	1	50	1.11
16541546--16541612	28	2.4	28	79	13	75	47	0	1	50	1.10
16541560--16541607	16	3.0	16	84	6	53	43	0	0	56	0.99
16541574--16541645	28	2.5	27	80	13	74	45	2	0	51	1.15
16542410--16542456	21	2.1	22	85	14	62	55	2	2	40	1.24
16542682--16542755	31	2.3	34	81	9	93	48	4	1	45	1.29
16542858--16542934	26	3.0	25	75	3	73	48	1	1	49	1.17
16543195--16543219	13	1.9	13	100	0	50	40	12	8	40	1.72
16543325--16543371	18	2.8	16	78	21	51	53	2	0	44	1.12
16544402--16544461	17	3.3	18	78	21	63	56	0	5	38	1.21
16544372--16544455	30	2.7	32	77	17	88	55	0	4	39	1.21
16544482--16544561	21	3.6	22	75	11	67	46	1	1	51	1.17
16544494--16544591	17	6.1	16	69	25	55	46	1	1	51	1.14
16545066--16545110	24	2.0	22	82	8	54	44	4	2	48	1.35
16545332--16545385	18	3.1	19	76	12	53	46	0	3	50	1.19
16545453--16545517	14	4.7	13	75	17	51	47	3	3	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16545491--16545523	15	2.1	16	88	5	50	48	6	0	45	1.27
16545537--16545593	25	2.4	25	80	11	66	49	1	1	47	1.22
16545663--16545703	21	1.9	22	85	5	57	43	0	2	53	1.13
16546673--16546707	3	12.0	3	93	6	63	34	0	0	65	0.93
16546672--16546715	20	2.2	20	91	0	70	40	0	0	59	0.98
16546744--16546798	27	2.1	26	86	3	74	41	1	3	52	1.29
16546830--16546888	23	2.5	24	83	10	68	45	0	3	50	1.18
16546965--16547023	28	2.2	28	85	8	79	49	0	0	50	1.00
16547120--16547170	23	2.2	23	79	6	59	31	1	1	64	1.15
16548245--16548323	41	2.0	39	83	14	99	39	2	3	54	1.32
16548257--16548333	14	5.6	14	68	28	51	38	2	2	55	1.27
16549332--16549392	25	2.6	24	85	12	74	45	3	3	47	1.35
16549550--16549594	23	1.9	24	86	4	65	42	0	6	51	1.28
16549619--16549706	10	8.2	10	73	19	63	46	3	0	50	1.18
16550049--16550089	20	2.0	20	85	9	55	51	0	0	48	1.00
16550187--16550252	31	2.3	31	82	10	77	48	0	1	50	1.10
16550417--16550482	24	2.7	24	79	9	71	40	1	1	56	1.18
16550454--16550496	14	3.3	14	81	15	56	39	0	0	60	0.97
16550437--16550496	24	2.5	22	86	13	75	40	0	1	58	1.08
16551018--16551074	11	4.5	13	74	26	52	49	0	1	49	1.11
16551183--16551235	27	2.0	26	85	14	72	52	0	0	47	1.00
16551210--16551270	18	3.3	19	77	13	56	50	0	3	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16551376--16551428	16	3.4	17	72	17	51	49	0	3	47	1.19
16551614--16551658	12	3.7	13	77	14	51	55	0	0	44	0.99
16551582--16551662	18	4.7	18	72	21	59	50	1	1	46	1.17
16551797--16551867	33	2.2	33	87	5	99	49	2	0	47	1.16
16552500--16552531	17	1.9	16	93	6	55	62	0	6	31	1.20
16552474--16552561	45	2.0	44	85	8	119	54	3	3	38	1.34
16552964--16553032	21	3.1	21	81	8	66	47	0	0	52	1.00
16553092--16553500	175	2.3	176	77	4	412	43	9	7	39	1.64
16553608--16554089	174	2.7	173	76	7	445	40	7	9	42	1.65
16554079--16554689	179	3.4	177	76	9	573	38	7	10	43	1.69
16555139--16556314	535	2.2	535	79	7	1240	41	9	8	41	1.66
16555078--16556624	180	8.7	179	74	9	1099	41	9	8	40	1.67
16555045--16556618	348	4.4	359	76	9	1146	41	9	8	40	1.67
16556737--16556795	4	15.2	4	74	13	52	50	1	1	45	1.21
16557505--16557545	17	2.3	18	76	19	50	43	2	0	53	1.13
16557643--16557682	19	2.0	20	86	13	57	55	0	0	45	0.99
16557607--16557678	21	3.3	21	73	13	65	54	1	1	43	1.17
16558124--16558173	18	2.8	18	82	8	59	46	0	2	52	1.12
16558428--16558462	16	2.1	17	89	5	54	57	2	0	40	1.14
16558456--16558516	31	2.1	29	82	11	72	42	1	6	49	1.38
16558634--16558675	16	2.4	18	80	7	52	52	4	2	40	1.35
16559541--16559576	15	2.5	15	90	4	56	50	5	2	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559675--16559735	13	4.7	13	78	13	56	52	1	0	45	1.10
16559774--16559816	14	2.9	15	79	10	52	48	2	4	44	1.36
16559856--16559896	14	2.9	15	85	7	50	48	0	0	51	1.00
16560739--16560797	27	2.1	27	84	3	82	49	0	6	44	1.29
16561292--16561329	17	2.3	16	86	4	58	52	0	0	47	1.00
16561276--16561324	21	2.3	22	79	13	57	48	0	0	51	1.00
16561740--16561770	11	2.9	11	95	4	55	45	0	0	54	0.99
16561895--16561925	16	1.9	16	93	0	53	51	3	3	41	1.34
16561965--16562039	30	2.5	30	81	10	91	50	5	0	44	1.24
16562203--16562250	20	2.4	19	77	16	53	54	2	0	43	1.12
16562204--16562266	25	2.6	24	82	9	67	55	1	0	42	1.09
16562253--16562318	17	4.1	17	69	18	52	45	0	1	53	1.09
16562272--16562349	30	2.6	30	78	15	72	46	1	1	51	1.17
16562342--16562774	182	2.4	179	81	6	478	39	8	10	41	1.70
16563254--16563299	23	2.0	22	83	4	56	47	0	0	52	1.00
16563289--16563327	20	2.0	20	85	10	53	35	0	5	58	1.20
16563426--16563489	31	2.3	29	79	15	73	50	0	1	48	1.10
16563691--16563746	27	2.1	27	83	12	71	37	0	5	57	1.22
16563866--16563905	19	2.1	19	85	0	53	45	0	0	55	0.99
16563863--16563903	12	3.3	12	83	6	55	43	0	0	56	0.99
16564024--16564083	31	2.0	30	83	9	77	53	1	0	45	1.10
16564537--16564578	16	2.7	16	79	17	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565426--16566506	181	6.0	181	79	4	1026	39	8	10	41	1.69
16565503--16566501	358	2.8	361	80	5	990	40	7	10	40	1.69
16566509--16567143	181	3.6	179	78	5	612	41	8	11	38	1.72
16566617--16567143	178	3.0	182	79	6	526	41	9	10	38	1.71
16567102--16567134	18	1.9	17	88	11	50	48	6	6	39	1.53
16567097--16567143	19	2.7	18	80	12	62	44	4	10	40	1.59
16567160--16569160	180	11.2	180	76	7	1608	41	10	7	40	1.68
16568080--16568120	20	2.0	20	86	9	57	41	4	0	53	1.22
16567160--16569160	710	2.8	712	79	7	1768	41	10	7	40	1.68
16569021--16569278	143	1.8	143	84	3	358	42	10	7	39	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113