genome.fa.s68.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  19  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6465860--6465887	13	2.2	13	100	0	56	0	7	0	92	0.37
6473536--6473591	22	2.5	23	75	16	64	41	1	0	57	1.09
6485246--6485305	31	1.9	31	89	0	93	41	3	5	50	1.41
6487577--6487621	21	2.1	22	84	12	58	2	15	8	73	1.18
6504042--6504068	2	13.5	2	100	0	54	51	0	0	48	1.00
6508886--6509067	97	1.9	98	87	5	271	25	15	15	42	1.87
6513926--6513983	29	2.0	29	89	0	89	39	6	1	51	1.39
6543074--6543119	23	2.0	23	83	12	58	34	4	4	56	1.39
6552421--6552447	13	2.1	13	100	0	54	51	18	22	7	1.70
6565993--6566027	3	11.7	3	100	0	70	65	0	0	34	0.93
6575850--6575874	11	2.3	11	100	0	50	16	40	0	44	1.47
6582245--6582294	25	2.0	25	100	0	100	12	20	12	56	1.67
6587621--6587663	21	2.1	20	82	4	50	58	2	0	39	1.11
6588408--6588440	16	2.1	16	88	5	50	63	0	3	33	1.10
6593703--6593749	21	2.3	21	92	3	78	57	17	17	8	1.63
6595767--6595804	19	2.0	20	94	5	69	36	0	5	57	1.21
6595813--6595855	19	2.4	17	81	11	50	39	0	2	58	1.11
6596412--6596455	13	3.5	12	76	11	52	52	4	0	43	1.22
6603718--6603742	12	2.1	12	100	0	50	8	8	24	60	1.52
6604219--6604289	25	2.6	30	75	22	75	33	0	0	66	0.92
6604274--6604335	21	2.7	22	87	12	90	46	0	0	53	1.00
6607094--6607165	3	23.7	3	91	2	117	30	0	2	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6613992--6614016	13	1.9	13	100	0	50	32	36	8	24	1.84
6614077--6614136	22	2.8	21	78	14	59	43	10	15	31	1.79
6621550--6621592	13	3.2	13	83	12	52	44	0	2	53	1.13
6621550--6621593	12	3.5	12	84	6	52	45	0	2	52	1.13
6622308--6622412	42	2.5	42	85	3	120	51	5	6	36	1.52
6622480--6622590	29	3.9	28	72	12	82	56	5	8	29	1.51
6622504--6622594	29	3.1	30	70	17	84	57	4	7	30	1.47
6622638--6622687	26	1.9	26	91	0	82	62	6	4	28	1.37
6622686--6622724	11	3.5	11	89	6	53	41	2	2	53	1.28
6623007--6623041	18	1.9	18	88	0	52	48	2	8	40	1.49
6630943--6630994	26	2.0	26	96	0	95	28	26	11	32	1.91
6636831--6636855	5	5.0	5	100	0	50	80	0	0	20	0.72
6636891--6636929	21	1.9	20	89	5	60	10	0	15	74	1.07
6638145--6638181	19	2.0	19	89	5	58	29	0	0	70	0.88
6638736--6638780	22	2.1	22	91	4	74	68	0	0	31	0.89
6642553--6642587	2	17.5	2	100	0	70	48	0	0	51	1.00
6651673--6651697	2	12.5	2	100	0	50	48	0	0	52	1.00
6663734--6663759	2	13.0	2	100	0	52	50	0	0	50	1.00
6667826--6668045	116	1.9	116	95	0	397	40	10	4	45	1.57
6684639--6684673	17	2.1	16	94	5	61	40	14	0	45	1.45
6687961--6688084	34	3.6	34	78	6	117	38	6	8	46	1.59
6687964--6688103	68	2.1	66	81	5	156	40	5	6	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6688025--6688092	34	2.0	34	88	0	100	44	4	2	48	1.38
6688171--6688330	83	1.9	82	88	7	241	40	4	7	47	1.52
6693721--6693751	2	15.5	2	93	0	53	0	48	0	51	1.00
6694433--6694498	32	2.0	33	85	2	89	36	3	3	57	1.29
6700191--6700224	2	17.0	2	100	0	68	0	50	0	50	1.00
6702887--6702914	14	2.0	14	100	0	56	64	14	14	7	1.48
6713515--6713638	16	7.9	16	76	13	89	49	30	1	18	1.57
6713513--6713651	8	17.9	8	66	20	55	48	29	1	20	1.59
6713516--6713651	30	4.4	31	75	9	127	48	29	1	20	1.58
6713516--6713638	15	7.9	15	78	11	97	48	30	1	18	1.58
6713556--6713635	31	2.7	29	80	7	97	48	33	1	16	1.54
6726492--6726578	29	3.0	29	80	11	97	49	1	10	39	1.44
6726458--6726591	30	4.5	30	80	9	121	48	1	8	41	1.44
6727015--6727061	18	2.6	18	76	10	51	40	0	0	59	0.97
6727215--6727261	6	7.3	6	80	17	51	48	4	0	46	1.21
6734730--6734763	16	2.1	16	100	0	68	29	26	11	32	1.92
6736297--6736355	30	2.0	30	89	0	91	45	8	0	45	1.33
6737775--6737820	23	2.0	23	87	8	67	50	0	2	47	1.13
6738139--6738170	16	2.0	16	93	0	55	31	21	18	28	1.97
6742555--6742757	106	1.9	106	96	0	379	34	11	21	32	1.90
6743257--6743283	13	2.1	13	100	0	54	22	14	14	48	1.81
6743928--6743957	15	2.0	15	93	0	51	3	20	0	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6753102--6753134	15	2.1	16	88	5	50	30	0	0	69	0.88
6753197--6753237	18	2.2	19	83	12	50	65	2	2	29	1.18
6766698--6766797	42	2.4	42	85	8	132	22	11	20	47	1.81
6766679--6766824	43	3.5	42	78	13	158	24	10	18	46	1.80
6766856--6766888	16	2.0	17	88	5	50	81	0	12	6	0.85
6767375--6767433	23	2.5	23	82	17	68	28	3	13	54	1.55
6767852--6767928	11	6.8	11	75	20	70	16	0	9	74	1.07
6767854--6767928	12	6.5	12	75	14	61	16	0	9	74	1.06
6767852--6767935	34	2.5	32	83	16	107	17	1	8	72	1.15
6768049--6768088	21	1.9	20	85	10	53	42	2	15	40	1.60
6767948--6768210	128	2.1	128	92	2	449	47	4	9	39	1.56
6768610--6768708	52	1.9	52	83	4	128	53	4	13	29	1.57
6772692--6772741	27	1.9	26	84	8	66	46	4	0	50	1.20
6776562--6776624	24	2.4	28	77	17	73	58	0	0	41	0.98
6776584--6776627	14	3.2	14	80	6	54	65	0	0	34	0.93
6777326--6777351	2	13.0	2	100	0	52	50	0	0	50	1.00
6777633--6777704	37	1.9	37	82	0	90	45	0	1	52	1.09
6792918--6792986	26	2.7	26	75	6	70	42	0	1	56	1.08
6806806--6806853	23	2.1	23	92	0	78	43	8	16	31	1.78
6809773--6809808	18	1.9	19	88	5	56	30	0	2	66	1.06
6813102--6813154	21	2.6	21	94	5	92	50	0	0	49	1.00
6813127--6813187	30	2.0	30	90	0	95	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6813458--6813550	48	1.9	49	85	8	129	58	0	1	40	1.05
6813455--6813545	27	3.3	27	71	17	78	57	0	1	41	1.06
6813561--6813596	19	1.9	19	88	5	56	50	0	5	44	1.25
6813580--6813637	12	5.1	12	73	12	50	62	1	1	34	1.16
6816441--6816489	24	2.1	23	84	3	62	36	0	8	55	1.30
6816457--6816502	24	1.9	24	86	8	67	39	0	4	56	1.19
6821499--6821523	4	6.2	4	100	0	50	24	0	0	76	0.80
6822293--6822333	18	2.3	18	82	0	55	43	0	0	56	0.99
6828051--6828085	3	11.7	3	100	0	70	65	0	0	34	0.93
6830457--6830491	18	1.9	18	94	0	61	45	14	11	28	1.79
6834851--6834890	2	20.0	2	85	10	55	50	2	2	45	1.28
6841401--6841454	24	2.3	24	78	15	60	62	14	0	22	1.31
6842342--6842389	21	2.2	21	85	3	60	35	14	12	37	1.84
6842355--6842457	22	4.7	22	80	4	84	32	14	18	34	1.91
6842420--6842512	22	4.2	22	70	14	75	36	20	13	29	1.91
6842427--6842540	44	2.6	44	80	0	147	37	20	14	27	1.92
6847393--6847444	22	2.3	23	87	9	72	57	5	7	28	1.50
6847405--6847450	22	2.2	21	80	7	58	63	6	6	23	1.43
6862564--6862871	23	12.9	23	65	19	84	55	1	1	41	1.21
6862561--6862835	60	4.7	57	70	17	181	54	2	1	42	1.19
6862561--6862858	62	4.9	61	74	16	180	54	2	1	41	1.20
6862591--6862693	31	3.3	31	80	14	97	56	0	0	42	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6862561--6862871	15	21.5	14	66	24	98	55	1	1	41	1.21
6862587--6862858	18	14.4	18	68	21	118	54	2	1	42	1.22
6862944--6862984	16	2.7	15	85	7	55	48	2	0	48	1.14
6862954--6863017	26	2.5	26	87	5	87	48	1	0	50	1.10
6863245--6863278	16	2.2	16	89	5	52	47	0	0	52	1.00
6863248--6863318	25	2.8	25	77	12	74	46	1	2	49	1.25
6868634--6868684	26	2.1	26	82	10	63	49	1	1	47	1.24
6876329--6876444	61	1.9	61	83	3	153	50	11	6	31	1.65
6876699--6876755	15	3.9	15	73	17	57	64	0	1	33	1.04
6876699--6876757	14	3.9	14	75	14	55	64	0	1	33	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113