genome.fa.s68.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  34  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10290106--10290164	18	3.1	19	90	7	93	89	8	0	1	0.54
10290106--10290164	1	59.0	1	79	0	64	89	8	0	1	0.54
10290369--10290417	16	2.7	19	78	15	59	32	0	6	61	1.21
10290394--10290550	54	2.9	55	75	15	139	27	2	4	65	1.25
10290933--10291001	31	2.2	32	84	5	88	20	23	26	30	1.98
10291555--10291834	57	4.7	57	84	8	371	44	7	12	35	1.71
10291549--10291834	123	2.4	117	89	5	441	44	8	12	35	1.71
10292750--10292796	22	2.1	22	85	14	62	46	0	0	53	1.00
10298918--10298970	23	2.3	23	86	0	79	28	18	22	30	1.98
10301286--10301311	13	2.0	13	100	0	52	76	7	0	15	0.99
10301346--10301814	59	7.8	59	85	8	610	32	12	8	46	1.72
10302411--10302440	12	2.6	11	90	10	51	30	16	13	40	1.87
10302414--10302439	12	2.2	12	100	0	52	23	15	15	46	1.83
10302830--10302976	23	5.9	23	69	23	77	70	3	3	22	1.17
10302928--10302962	11	3.1	12	88	12	56	80	0	0	20	0.72
10302930--10302964	6	5.8	6	90	10	54	80	0	0	20	0.72
10302830--10302964	12	11.9	11	68	20	57	71	2	2	23	1.11
10303128--10303235	1	108.0	1	71	0	81	0	0	12	86	0.68
10303128--10303232	8	12.6	8	80	15	92	0	0	12	85	0.69
10303134--10303233	9	10.7	9	83	10	112	1	1	12	86	0.69
10303134--10303234	10	9.6	10	77	16	98	0	0	11	86	0.68
10303129--10303235	11	9.6	11	81	12	105	0	0	12	85	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10303241--10303857	41	15.0	41	88	6	867	36	21	18	23	1.95
10303241--10303857	164	3.7	164	91	4	978	36	21	18	23	1.95
10305039--10305116	17	4.1	18	76	23	63	7	14	0	78	0.96
10305037--10305114	38	2.1	36	81	13	86	6	15	0	78	0.95
10305158--10305202	22	2.0	22	100	0	90	24	22	17	35	1.95
10308950--10308975	13	2.0	13	100	0	52	76	7	0	15	0.99
10309010--10309412	123	3.3	118	88	7	591	32	12	8	46	1.71
10309010--10309422	181	2.3	182	88	2	627	32	12	8	46	1.71
10309889--10309934	19	2.3	20	81	3	58	28	21	28	21	1.99
10310456--10310503	23	2.1	23	88	11	73	79	2	2	16	0.93
10310419--10310583	74	2.2	78	80	13	175	68	3	3	24	1.20
10310554--10310588	11	3.1	12	88	12	56	80	0	0	20	0.72
10310556--10310590	6	5.8	6	90	10	54	80	0	0	20	0.72
10313180--10313548	186	2.0	186	89	0	558	47	8	6	37	1.60
10324894--10324926	9	3.5	10	88	12	52	0	15	0	84	0.61
10324898--10324926	15	1.9	15	100	0	58	0	13	0	86	0.58
10325940--10325992	23	2.3	23	90	0	88	30	18	20	30	1.97
10327443--10327477	17	2.1	17	100	0	70	5	42	5	45	1.51
10328834--10329196	187	1.9	187	85	1	494	46	7	7	38	1.59
10334858--10334882	2	12.5	2	100	0	50	48	0	0	52	1.00
10335330--10335372	19	2.3	19	80	8	52	46	11	6	34	1.67
10336910--10336945	17	2.1	17	89	0	54	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10337946--10337988	18	2.3	18	80	4	50	23	0	0	76	0.78
10338393--10338522	16	8.5	15	71	11	84	47	31	1	19	1.58
10338434--10338488	15	3.6	14	81	13	56	50	32	3	12	1.58
10338470--10338578	51	2.1	51	83	8	132	49	34	0	14	1.50
10340542--10340581	20	2.1	19	85	4	53	2	25	12	60	1.45
10344233--10344301	33	2.1	33	91	0	111	50	10	8	30	1.66
10345436--10345478	18	2.3	18	84	4	50	69	0	2	27	1.00
10345499--10345525	2	13.5	2	100	0	54	51	0	0	48	1.00
10347662--10347710	12	4.1	12	76	10	55	48	0	2	48	1.12
10347668--10347717	24	2.1	23	92	3	82	52	0	2	46	1.12
10347664--10347766	27	4.0	25	74	16	86	50	0	2	46	1.16
10347966--10348008	21	2.0	22	86	4	61	55	0	4	39	1.20
10347969--10348020	21	2.5	21	77	0	59	55	3	3	36	1.36
10350952--10351010	6	9.7	6	77	15	59	37	0	0	62	0.95
10350959--10351007	24	2.0	24	92	8	80	38	0	0	61	0.96
10351465--10351522	23	2.5	23	78	10	57	36	5	0	58	1.20
10352482--10352523	3	14.0	3	100	0	84	33	0	0	66	0.92
10353225--10353270	24	1.9	23	83	16	58	30	2	2	65	1.16
10353341--10353401	21	2.8	22	76	16	65	72	6	3	18	1.21
10353345--10353411	21	3.2	20	72	16	55	74	5	1	17	1.09
10353974--10354002	3	9.7	3	100	0	58	31	0	0	68	0.89
10356750--10356775	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10358534--10358578	22	2.1	21	83	4	54	57	8	0	33	1.30
10358842--10358892	2	28.0	2	77	18	58	50	0	0	49	1.00
10358988--10359043	26	2.2	24	77	22	60	39	3	1	55	1.28
10358972--10359031	31	2.0	30	90	3	93	36	1	3	58	1.25
10358981--10359049	31	2.4	29	81	11	81	42	2	1	53	1.24
10367775--10367806	6	5.3	6	92	0	55	12	18	0	68	1.20
10373963--10374015	23	2.3	23	90	0	88	30	18	20	30	1.97
10376796--10376934	15	8.9	16	71	19	98	17	0	28	52	1.50
10376796--10376928	8	17.0	8	70	20	68	18	0	28	51	1.51
10378321--10378351	1	31.0	1	100	0	62	0	0	0	100	0.00
10378381--10378421	3	13.7	3	84	0	55	39	2	0	58	1.11
10382381--10382482	52	2.0	52	86	3	143	27	19	6	46	1.75
10387232--10387268	2	18.5	2	88	0	56	48	5	0	45	1.25
10388113--10388191	24	3.4	23	80	15	83	45	1	2	50	1.23
10388112--10388179	2	36.5	2	77	14	65	47	1	2	48	1.26
10388148--10388199	24	2.1	25	89	3	79	46	0	0	53	1.00
10394798--10394911	25	4.6	25	73	6	106	35	7	35	21	1.81
10394798--10394911	49	2.3	50	83	4	142	35	7	35	21	1.81
10395212--10395316	52	2.0	52	83	3	131	39	7	24	28	1.83
10403571--10403623	23	2.3	23	90	0	88	30	18	20	30	1.97
10406388--10406509	16	7.9	14	73	14	64	18	0	28	53	1.45
10406441--10406500	8	7.9	7	82	14	66	18	0	25	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10406372--10406503	15	8.5	15	74	16	108	18	0	28	53	1.45
10406372--10406503	7	16.9	8	71	21	68	18	0	28	53	1.45
10407986--10408029	3	14.7	3	85	0	61	38	2	0	59	1.10
10409168--10409530	184	2.0	185	84	2	478	44	8	7	39	1.62
10417385--10417485	52	2.0	51	86	2	139	29	17	5	46	1.72
10423249--10423301	21	2.7	20	82	8	63	30	0	1	67	1.01
10423448--10423530	43	1.9	44	95	2	150	49	19	10	20	1.78
10423664--10423703	21	1.9	21	84	0	53	55	2	2	40	1.27
10423771--10423810	20	2.0	21	90	5	64	45	5	5	45	1.47
10425913--10425964	3	17.3	3	100	0	104	32	0	0	67	0.91
10426797--10426856	9	6.9	9	77	9	54	71	3	3	21	1.15
10426807--10426891	29	2.8	30	76	10	84	75	3	4	16	1.11
10432150--10432225	2	40.5	2	74	12	72	47	3	2	46	1.35
10432261--10432334	20	3.8	19	71	7	69	59	0	0	40	0.97
10432311--10432373	17	4.0	16	68	15	51	42	1	1	53	1.19
10432345--10432396	26	1.9	28	84	7	72	42	5	0	51	1.25
10437780--10437819	19	2.1	19	86	9	55	15	17	37	30	1.90
10438632--10438682	10	5.2	10	84	11	61	80	0	15	3	0.86
10438648--10438687	20	2.0	20	85	5	53	80	0	10	10	0.92
10438868--10439794	50	19.0	50	79	5	755	38	18	11	31	1.86
10450967--10451341	207	1.8	205	80	10	460	38	11	6	43	1.67
10451505--10451541	18	2.0	19	85	15	51	70	2	0	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10452521--10452558	13	2.8	14	80	8	51	76	0	18	5	0.97
10452530--10452573	21	2.0	23	87	12	67	77	0	15	6	0.97
10456615--10456639	2	12.5	2	100	0	50	48	0	0	52	1.00
10460977--10461030	13	4.1	13	80	9	56	72	7	1	18	1.17
10465383--10465429	21	2.2	22	84	3	60	40	2	0	57	1.11
10465687--10465713	2	13.5	2	100	0	54	48	0	0	51	1.00
10468924--10469024	17	6.1	17	64	14	50	67	2	4	24	1.25
10469111--10469176	29	2.1	32	83	10	84	65	0	9	25	1.22
10469324--10469471	28	5.2	28	78	9	140	46	29	0	23	1.57
10469418--10469472	16	3.7	16	75	22	57	45	30	0	23	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113