genome.fa.s68.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  5  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249756--1249781	3	8.7	3	100	0	52	0	0	34	65	0.93
1250497--1250534	17	2.3	16	86	8	58	0	28	0	71	0.87
1254359--1254395	3	12.3	3	94	0	65	32	2	0	64	1.07
1258806--1258905	30	3.4	29	78	6	94	48	3	10	39	1.52
1259702--1259727	7	3.7	7	100	0	52	88	0	0	11	0.52
1272109--1272145	2	18.5	2	100	0	74	0	48	0	51	1.00
1272145--1272169	2	12.5	2	100	0	50	48	0	0	52	1.00
1281118--1281159	20	2.1	20	100	0	84	28	19	16	35	1.93
1282115--1282163	14	3.4	15	81	13	59	42	0	0	57	0.99
1282120--1282164	13	3.3	13	81	9	54	42	0	0	57	0.98
1282215--1282267	21	2.5	21	87	0	79	39	3	0	56	1.17
1284191--1284228	18	2.1	18	90	0	58	36	7	0	55	1.29
1288140--1288182	20	2.0	22	91	8	72	51	2	0	46	1.13
1292719--1292767	2	26.0	2	88	12	77	46	0	53	0	1.00
1305631--1305658	10	2.8	10	100	0	56	50	0	28	21	1.49
1309266--1309296	5	6.2	5	96	0	53	16	19	22	41	1.89
1320135--1320166	16	2.0	16	93	0	55	46	0	0	53	1.00
1323805--1323850	22	2.0	22	83	8	56	45	0	2	52	1.13
1324942--1324987	20	2.2	21	88	3	67	54	0	4	41	1.20
1325053--1325122	30	2.4	30	83	4	81	54	0	0	45	0.99
1326808--1326866	30	2.0	30	86	6	84	59	0	0	40	0.97
1326817--1326892	23	3.2	23	69	14	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328050--1328080	12	2.7	11	90	9	53	32	0	0	67	0.91
1328081--1328139	30	2.0	30	86	0	82	45	0	1	52	1.10
1333681--1333710	15	2.0	15	100	0	60	46	6	20	26	1.75
1340606--1340669	8	7.5	8	77	18	58	18	0	4	76	0.95
1340640--1340675	16	2.3	15	90	4	54	16	0	5	77	0.94
1340629--1340706	23	3.0	27	83	10	83	16	5	5	73	1.20
1340652--1340707	27	2.1	26	80	12	60	16	7	7	69	1.33
1342030--1342442	58	7.1	58	83	7	443	39	9	5	45	1.60
1342030--1342420	178	2.2	172	84	6	498	38	9	5	46	1.60
1342449--1342527	5	15.0	5	79	12	79	75	0	3	20	0.95
1342452--1342514	6	10.5	6	76	17	60	79	0	4	15	0.90
1342452--1342517	11	6.1	11	76	16	75	78	0	4	16	0.90
1342434--1342519	33	2.6	33	80	17	106	76	0	5	17	0.97
1342434--1342519	32	2.6	33	80	17	106	76	0	5	17	0.97
1342449--1342524	16	4.7	15	74	18	55	76	0	3	19	0.94
1343086--1343127	13	3.2	13	83	16	59	64	16	0	19	1.30
1343479--1343546	14	4.4	14	74	15	55	63	1	4	30	1.23
1343442--1343544	26	4.6	22	75	16	88	60	2	4	32	1.33
1343417--1343526	42	2.6	42	83	8	127	61	1	5	30	1.29
1343621--1343709	7	12.7	7	71	21	55	68	1	4	25	1.15
1343662--1343730	34	2.0	34	83	5	86	72	1	2	23	1.06
1343680--1343728	20	2.2	23	82	17	68	75	2	0	22	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1343676--1343730	7	8.1	7	86	9	62	74	1	0	23	0.91
1343682--1343739	27	2.1	27	87	6	82	75	3	1	18	1.03
1343889--1343946	26	2.3	24	79	5	62	43	3	8	44	1.51
1344097--1344152	27	2.1	28	86	6	80	48	8	7	35	1.62
1344253--1344302	25	2.0	26	84	11	68	46	4	8	42	1.52
1344699--1344794	47	2.1	46	86	9	133	29	9	9	52	1.65
1351247--1351327	39	2.1	39	83	0	99	28	23	13	34	1.93
1361101--1361181	39	2.1	39	85	0	108	27	23	13	35	1.92
1367618--1367671	24	2.2	24	83	6	65	38	0	3	57	1.17
1380325--1380352	2	14.0	2	100	0	56	50	0	0	50	1.00
1383726--1383780	25	2.2	25	87	12	78	56	3	3	36	1.34
1385572--1385598	3	9.0	3	100	0	54	66	0	0	33	0.92
1399164--1399332	36	4.8	35	72	8	117	18	18	15	46	1.85
1399174--1399474	107	2.8	106	85	5	387	18	20	13	46	1.83
1399441--1399989	170	3.2	168	86	6	732	21	19	12	46	1.83
1400123--1400241	37	3.2	37	80	0	130	15	23	18	42	1.89
1400234--1400506	109	2.5	109	87	1	386	21	23	10	44	1.84
1400316--1400506	36	5.3	36	76	10	192	21	23	9	45	1.82
1400702--1400749	25	1.9	25	87	8	71	50	0	4	45	1.21
1400832--1400857	12	2.2	12	100	0	52	84	7	7	0	0.77
1401818--1401877	29	2.0	30	84	9	79	26	0	1	71	0.95
1402280--1402305	13	2.0	13	100	0	52	46	30	0	23	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404352--1404403	24	2.2	24	92	0	86	23	42	17	17	1.89
1404404--1404473	25	2.8	25	86	6	97	15	35	21	27	1.94
1404404--1404481	24	3.2	24	87	1	93	14	34	21	29	1.93
1406245--1406291	24	2.0	24	95	0	85	25	14	17	42	1.87
1414314--1414352	20	2.0	20	89	0	60	51	0	2	46	1.14
1416765--1416795	11	2.9	11	95	4	55	93	0	6	0	0.35
1416765--1416797	17	1.9	17	93	0	57	90	0	9	0	0.44
1417251--1418769	251	6.0	251	89	4	2336	31	14	16	37	1.89
1419552--1419596	17	2.6	17	80	13	56	33	0	0	66	0.92
1419550--1419671	13	9.2	13	69	22	67	41	0	2	55	1.13
1419650--1419694	21	2.1	21	91	4	72	53	0	0	46	1.00
1423343--1423382	2	20.0	2	100	0	80	50	0	0	50	1.00
1435184--1435260	24	3.2	24	88	3	102	20	41	16	20	1.90
1435197--1435297	24	4.2	25	83	9	113	17	37	20	23	1.94
1435221--1435319	24	4.1	24	81	5	83	16	36	20	27	1.93
1436395--1437631	643	1.9	648	92	2	2103	27	21	18	32	1.97
1445814--1445852	20	2.0	20	89	0	60	51	0	2	46	1.14
1448264--1448292	12	2.4	12	100	0	58	93	0	6	0	0.36
1448748--1450513	251	7.0	250	87	5	2574	31	14	17	37	1.89
1448748--1450498	504	3.5	497	89	4	2470	31	14	17	37	1.89
1448748--1450513	755	2.3	756	95	1	3159	31	14	17	37	1.89
1451280--1451403	13	9.2	13	69	24	62	42	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1451301--1451401	42	2.4	42	80	18	113	42	0	1	55	1.11
1451389--1451445	19	2.9	18	79	7	51	47	0	1	50	1.11
1455000--1455025	2	13.0	2	100	0	52	50	0	0	50	1.00
1469238--1469264	2	13.5	2	100	0	54	0	48	0	51	1.00
1473493--1473534	21	2.0	21	95	0	75	52	9	7	30	1.61
1485107--1485146	3	13.3	3	100	0	80	65	0	0	35	0.93
1486539--1486596	3	19.3	3	96	0	107	67	1	0	31	1.01
1486750--1486849	15	6.7	15	73	14	73	45	37	0	18	1.49
1486750--1486819	7	9.4	7	72	17	52	44	34	0	21	1.53
1486735--1486834	44	2.2	45	85	1	139	46	34	1	19	1.57
1486935--1487003	28	2.4	29	83	9	79	47	30	1	20	1.59
1486966--1487028	15	4.3	15	73	13	51	52	28	1	17	1.54
1486995--1487028	16	2.2	16	89	5	52	55	26	2	14	1.53
1494938--1494967	15	2.0	15	93	0	51	20	23	13	43	1.86
1495260--1495345	41	2.1	41	91	4	138	37	19	15	27	1.92
1495725--1495775	22	2.3	22	80	6	59	25	27	19	27	1.99
1495847--1495904	22	2.6	22	81	5	64	29	29	18	22	1.98
1495413--1496021	127	4.7	128	80	4	636	32	15	15	35	1.90
1495417--1496116	127	5.5	128	80	3	635	33	15	15	35	1.89
1496186--1496294	44	2.5	44	81	0	119	31	23	12	32	1.92
1496186--1496301	22	5.3	22	80	4	108	31	23	12	31	1.92
1496228--1496313	22	3.9	22	75	11	95	33	25	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1496871--1496905	15	2.3	15	90	0	61	57	0	0	42	0.99
1498308--1498335	3	9.3	3	100	0	56	67	0	0	32	0.91
1498481--1498603	29	4.2	29	77	7	113	45	29	1	23	1.62
1498481--1498630	59	2.6	59	77	5	144	46	28	2	23	1.63
1498624--1498690	30	2.2	30	83	0	80	43	28	7	20	1.79
1498738--1498794	7	8.0	7	76	3	51	52	28	1	17	1.54
1500400--1500443	18	2.4	19	85	14	65	50	0	0	50	1.00
1515002--1515044	14	3.0	14	83	6	50	72	0	13	13	1.13
1515174--1515230	19	3.0	19	87	7	80	49	0	0	50	1.00
1516206--1516240	15	2.2	16	90	10	54	20	2	0	77	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113