genome.fa.s68.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  42  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11839946--11840007	10	5.5	11	78	16	65	3	17	0	79	0.87
11843923--11844270	57	6.0	57	86	8	479	35	11	7	45	1.70
11843923--11844267	117	3.0	115	88	6	491	35	11	7	45	1.70
11843923--11844270	174	2.0	176	89	6	548	35	11	7	45	1.70
11844273--11844319	17	3.0	16	84	9	53	78	0	4	17	0.90
11844278--11844348	6	11.5	6	74	15	56	80	1	4	14	0.93
11844292--11844430	18	7.4	18	69	18	88	75	4	3	16	1.10
11844278--11844343	27	2.3	29	84	5	82	80	1	4	13	0.94
11844291--11844349	10	5.9	10	75	13	59	81	1	3	13	0.90
11844273--11844348	27	2.7	27	77	18	75	78	1	5	14	0.98
11844335--11844374	17	2.4	16	84	8	53	72	0	5	22	1.04
11845289--11845344	23	2.5	22	85	8	76	66	3	7	23	1.33
11845290--11845333	23	1.9	23	95	0	79	68	2	6	22	1.25
11845355--11845393	8	4.9	8	84	9	53	79	5	0	15	0.90
11845351--11845399	23	2.1	22	85	14	64	79	4	0	16	0.88
11845349--11845400	17	3.0	18	86	13	74	78	3	0	17	0.89
11845446--11845479	7	5.1	7	96	3	54	76	0	0	23	0.79
11845994--11846084	45	2.0	45	95	0	164	38	6	7	47	1.58
11856909--11856987	14	5.6	14	68	11	54	22	3	30	43	1.71
11856903--11856986	28	3.0	28	89	0	123	25	4	28	41	1.75
11858680--11858713	15	2.3	15	94	0	59	11	2	5	79	1.02
11862598--11862682	17	4.9	17	72	12	57	40	3	0	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11864999--11865032	17	2.0	17	88	11	52	47	8	0	44	1.34
11865725--11865778	21	2.5	20	77	11	54	5	25	1	66	1.23
11865753--11865795	17	2.6	16	79	13	52	0	32	2	65	1.06
11865879--11865919	20	2.1	20	90	4	66	39	2	14	43	1.59
11867075--11867136	27	2.3	27	86	2	81	51	1	0	46	1.10
11869077--11869173	22	4.4	21	76	6	79	50	4	4	41	1.40
11869077--11869184	44	2.5	44	83	3	128	51	3	3	40	1.37
11869122--11869206	11	7.7	11	80	5	82	51	2	3	42	1.31
11869116--11869209	22	4.3	22	83	1	109	52	2	3	42	1.29
11869347--11869612	22	12.3	22	70	14	69	48	5	9	37	1.59
11869505--11869607	44	2.3	44	79	0	116	46	7	10	34	1.67
11869457--11869612	66	2.3	66	80	8	174	50	5	8	35	1.56
11869508--11869607	22	4.5	22	80	0	92	46	8	11	35	1.69
11869648--11869824	22	8.0	22	76	6	128	45	6	7	40	1.57
11869648--11869818	66	2.6	66	78	5	175	46	6	7	39	1.58
11870114--11870276	22	7.4	22	69	10	73	47	3	9	39	1.52
11870097--11870196	44	2.3	44	80	3	103	53	3	8	36	1.46
11870082--11870389	11	28.1	11	61	13	53	50	3	8	37	1.50
11870134--11870380	22	11.3	22	72	9	139	49	3	8	38	1.50
11870257--11870350	43	2.2	44	82	5	111	51	4	7	37	1.50
11870400--11870477	34	2.3	33	76	10	86	39	2	12	44	1.56
11870427--11870473	11	4.3	11	78	10	51	38	4	10	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11870486--11870526	21	1.9	22	90	5	66	43	0	14	41	1.45
11870531--11870715	22	8.4	22	71	9	108	46	5	8	40	1.56
11871099--11871203	21	5.1	20	79	7	104	42	6	11	39	1.67
11871100--11871210	41	2.7	42	82	8	138	42	7	11	38	1.69
11871079--11871196	62	1.9	63	84	5	159	43	7	11	37	1.70
11871099--11871217	42	2.9	40	79	9	125	42	6	11	38	1.68
11872798--11872921	52	2.4	53	86	2	171	28	22	8	41	1.82
11872978--11873020	11	3.9	11	84	0	59	51	27	0	20	1.48
11872975--11873021	22	2.1	22	92	0	76	46	27	0	25	1.53
11873266--11873315	25	2.0	25	88	7	75	28	28	4	40	1.74
11873760--11873806	23	2.0	23	95	0	85	17	34	8	40	1.79
11873941--11874095	52	3.0	52	78	1	150	25	19	9	45	1.80
11874121--11874160	11	3.6	11	82	0	53	55	22	0	22	1.44
11874118--11874164	22	2.1	22	96	0	85	46	25	0	27	1.53
11879988--11880025	17	2.2	17	90	0	58	34	23	13	28	1.92
11882742--11882779	19	2.0	20	85	15	53	23	2	5	68	1.23
11883683--11883709	6	4.5	6	100	0	54	29	18	18	33	1.95
11884267--11884307	20	2.0	21	86	13	59	56	0	4	39	1.21
11887178--11887472	147	2.0	147	94	2	513	35	13	9	42	1.76
11887380--11887419	21	1.9	21	89	0	62	20	5	0	75	0.99
11890474--11890586	42	2.7	43	79	5	124	19	11	17	51	1.75
11890596--11890692	41	2.3	41	83	1	131	21	8	14	55	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11892093--11892187	33	2.9	33	78	9	88	45	7	30	16	1.75
11892213--11892261	24	2.0	24	84	0	62	38	8	32	20	1.82
11895972--11896048	37	2.1	37	85	4	102	54	20	7	16	1.67
11895977--11896064	37	2.4	37	80	0	95	59	18	6	15	1.58
11897488--11897520	17	1.9	17	93	0	57	9	3	3	84	0.82
11900685--11900719	14	2.5	14	90	0	52	48	2	8	40	1.49
11900798--11900837	20	2.0	21	90	5	64	32	15	10	42	1.79
11906593--11906665	38	1.9	37	83	8	94	49	6	0	43	1.29
11911996--11912029	17	2.0	17	88	11	52	47	8	0	44	1.34
11912013--11912097	37	2.4	36	82	9	102	35	10	8	45	1.69
11912720--11912774	21	2.7	21	78	16	62	5	21	0	72	1.04
11912739--11912785	16	2.9	16	83	0	58	2	23	2	72	1.06
11912871--11912911	20	2.1	20	86	4	57	39	4	14	41	1.67
11916125--11916204	22	3.6	22	79	3	81	51	3	3	41	1.38
11916155--11916239	11	7.7	11	81	5	82	50	2	3	43	1.32
11916149--11916242	33	2.9	33	76	7	93	51	2	3	43	1.29
11916127--11916242	44	2.7	44	81	6	128	50	2	4	43	1.36
11916149--11916242	22	4.3	22	86	1	109	51	2	3	43	1.29
11916249--11916310	22	2.9	22	83	7	65	53	4	6	35	1.48
11916543--11916618	22	3.5	22	85	0	107	47	10	9	32	1.70
11916703--11916864	22	7.4	22	76	2	103	45	6	7	40	1.59
11916680--11916855	44	4.0	43	76	5	131	46	6	7	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11917234--11917399	22	7.6	22	72	11	83	50	3	7	37	1.49
11917499--11917552	21	2.5	21	78	6	54	38	1	16	42	1.59
11917566--11917715	22	6.8	22	73	8	99	50	4	6	39	1.48
11917663--11917720	11	5.3	11	74	0	53	51	1	6	39	1.39
11917630--11917726	44	2.2	43	78	5	104	47	5	7	40	1.53
11920248--11920302	13	4.5	12	77	16	51	18	0	1	80	0.81
11920266--11920302	18	2.1	18	94	0	65	21	0	2	75	0.92
11920261--11920304	7	6.9	7	82	12	51	22	0	2	75	0.92
11920270--11920312	13	3.4	12	81	9	50	27	0	0	72	0.85
11920389--11920421	9	3.7	9	88	11	50	0	21	0	78	0.75
11920388--11920419	10	3.4	10	87	12	50	0	18	0	81	0.70
11920427--11920519	39	2.3	43	81	7	113	32	3	2	62	1.23
11920508--11920586	21	3.8	21	79	12	92	24	5	1	69	1.16
11920507--11920586	43	1.9	41	85	12	110	23	5	1	70	1.15
11921425--11921528	11	8.6	12	72	20	67	23	0	1	74	0.98
11921480--11921530	18	2.8	18	78	18	61	19	1	0	78	0.85
11921429--11921529	13	7.9	13	71	21	72	23	0	1	73	1.00
11921556--11921748	59	3.3	59	83	7	232	45	5	11	36	1.65
11921677--11921826	79	1.9	81	90	5	243	42	6	11	39	1.67
11927154--11927259	43	2.5	42	80	10	124	34	11	17	35	1.86
11927542--11927874	41	7.8	42	87	3	323	24	14	21	39	1.91
11927536--11927783	83	3.0	82	85	6	331	25	14	20	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11927536--11927783	124	2.0	124	85	4	331	25	14	20	38	1.91
11927707--11927874	46	3.7	46	88	3	236	24	14	22	39	1.91
11928067--11928117	25	2.0	25	85	7	68	21	0	1	76	0.88
11928083--11928123	18	2.3	18	86	0	55	29	0	0	70	0.87
11928224--11928330	20	5.4	20	72	21	77	29	3	2	63	1.26
11928242--11928330	21	4.3	19	77	18	72	31	3	2	62	1.23
11928252--11928334	39	2.1	41	82	8	100	30	3	2	63	1.24
11928322--11928401	21	3.8	20	82	9	97	22	6	1	70	1.17
11928322--11928411	21	4.2	21	77	14	78	21	5	2	71	1.18
11928322--11928411	44	2.1	43	84	10	114	21	5	2	71	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113