genome.fa.s68.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  92  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19077525--19077566	21	2.0	21	86	13	61	19	2	9	69	1.28
19077527--19077572	21	2.2	21	81	14	51	19	2	10	67	1.31
19078540--19078746	58	3.6	58	88	2	301	44	6	11	37	1.66
19082679--19082727	8	5.6	8	83	13	53	69	2	18	10	1.27
19082678--19082727	17	2.8	17	82	14	57	68	2	20	10	1.29
19083993--19084571	46	12.5	46	79	9	590	37	10	14	36	1.81
19084020--19084569	71	7.8	70	78	11	470	38	10	14	36	1.81
19085067--19085242	40	4.2	41	76	12	162	21	14	19	44	1.86
19085075--19085242	42	4.1	39	77	12	151	21	13	19	45	1.84
19085081--19085247	43	4.0	42	80	7	171	21	13	19	44	1.85
19086507--19086916	59	7.0	58	87	3	545	45	6	10	37	1.65
19086507--19086916	117	3.5	115	88	3	561	45	6	10	37	1.65
19088688--19088743	1	56.0	1	81	0	67	91	0	8	0	0.43
19088688--19088748	10	6.1	10	87	11	81	88	0	9	1	0.58
19088688--19088743	21	2.8	19	89	10	78	91	0	8	0	0.43
19088688--19088748	25	2.5	24	84	15	88	88	0	9	1	0.58
19090033--19090088	21	2.6	21	78	13	69	39	5	16	39	1.71
19090527--19090753	42	5.4	42	83	6	244	25	11	18	44	1.83
19090522--19090754	41	5.5	42	82	7	276	25	11	18	44	1.83
19091530--19091578	26	1.9	26	83	4	64	48	6	8	36	1.58
19091837--19091964	55	2.3	54	76	11	134	52	7	14	25	1.68
19093090--19093184	50	1.9	49	87	6	138	43	5	4	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19093167--19093199	10	3.3	10	91	8	50	45	0	0	54	0.99
19097752--19097825	30	2.5	30	75	4	78	39	16	6	37	1.75
19097861--19097919	29	2.0	29	83	3	73	38	8	22	30	1.83
19100394--19100420	2	13.5	2	100	0	54	51	0	0	48	1.00
19101833--19101865	2	16.5	2	100	0	66	51	0	0	48	1.00
19105238--19105287	19	2.6	19	81	6	57	56	0	0	44	0.99
19105310--19105366	24	2.4	23	80	13	62	54	0	0	45	0.99
19105351--19105406	16	3.4	17	76	13	55	41	1	0	57	1.09
19106995--19107066	32	2.2	32	85	0	99	34	22	15	27	1.94
19115339--19115407	29	2.3	30	82	5	77	18	10	15	55	1.68
19115465--19115527	32	2.1	31	85	11	87	19	4	7	68	1.33
19119266--19119402	24	5.8	22	72	22	64	30	5	4	59	1.38
19119316--19119349	18	1.9	17	94	5	59	35	2	8	52	1.47
19119345--19119420	3	25.3	3	86	5	109	31	5	0	63	1.17
19119293--19119420	12	11.3	12	73	20	98	31	4	3	60	1.32
19120209--19120253	19	2.3	19	92	3	72	17	2	2	77	0.97
19120209--19120292	13	5.8	13	70	22	53	21	2	2	73	1.06
19120282--19120320	20	2.0	20	84	0	51	23	7	5	64	1.40
19120317--19120359	23	1.9	22	90	4	68	32	6	2	58	1.38
19124992--19125031	12	3.2	13	86	13	57	85	0	15	0	0.61
19127188--19127242	8	7.2	8	87	8	71	21	0	3	74	0.97
19127188--19127242	15	3.7	15	87	4	76	21	0	3	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19127183--19127242	7	8.3	7	80	12	68	23	0	3	73	0.98
19127239--19127268	15	1.9	16	93	6	53	6	13	0	80	0.91
19128034--19128058	11	2.3	11	100	0	50	44	8	8	40	1.63
19128057--19128094	20	1.9	20	94	0	67	57	7	5	28	1.49
19128479--19128870	41	9.4	42	77	7	264	44	17	10	27	1.81
19128549--19128619	24	3.2	24	61	35	59	49	15	8	26	1.73
19128522--19128875	41	8.5	41	80	3	273	44	17	10	27	1.82
19128479--19128875	83	4.7	83	79	4	345	44	17	10	27	1.81
19129144--19129181	20	1.9	20	88	0	58	28	21	10	39	1.86
19129196--19129288	43	2.2	43	83	11	111	34	16	11	37	1.85
19129696--19129959	79	3.3	78	83	1	267	31	20	9	38	1.85
19130540--19130596	10	5.8	10	81	4	53	5	7	1	85	0.78
19130549--19130596	10	4.8	10	84	7	62	2	8	2	87	0.70
19130549--19130596	18	2.6	18	86	6	60	2	8	2	87	0.70
19134511--19134536	7	3.7	7	100	0	52	15	0	0	84	0.62
19135714--19135762	19	2.6	19	86	0	71	38	24	18	18	1.93
19136443--19136579	3	46.3	3	76	16	99	35	2	3	58	1.28
19136435--19136572	13	10.7	13	72	15	58	36	2	3	57	1.31
19136435--19136579	44	3.3	44	78	13	122	35	2	3	57	1.30
19137334--19137376	19	2.3	19	87	0	59	13	6	2	76	1.08
19137395--19137459	18	3.5	19	77	12	55	29	1	3	66	1.16
19141258--19141309	18	2.7	19	91	5	79	19	9	9	61	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19141666--19141692	12	2.2	12	100	0	54	25	7	14	51	1.68
19144628--19144683	20	2.8	19	81	7	58	75	0	3	21	0.96
19144801--19144832	14	2.3	14	94	0	55	59	18	0	21	1.38
19144992--19145060	29	2.3	29	83	14	79	50	30	0	18	1.47
19145018--19145060	15	2.8	16	82	7	61	48	32	0	18	1.48
19150295--19150319	11	2.3	11	100	0	50	84	8	0	8	0.79
19151899--19152134	33	7.2	33	69	12	116	35	16	16	31	1.91
19151869--19152013	32	4.5	32	68	19	86	32	17	17	32	1.94
19151870--19152177	98	3.2	97	83	6	354	34	18	15	31	1.92
19152236--19152307	33	2.2	33	87	0	108	31	18	18	31	1.94
19152245--19152324	33	2.4	33	87	2	106	30	17	17	35	1.93
19152395--19152871	37	13.0	36	72	11	216	14	16	17	51	1.76
19152401--19152483	36	2.3	36	82	2	103	12	18	19	50	1.77
19152500--19152921	37	11.4	37	73	9	243	15	16	16	51	1.77
19152391--19152840	73	6.1	74	74	6	326	14	16	17	51	1.76
19152640--19152779	38	3.7	38	77	5	115	15	13	15	56	1.68
19152566--19152857	149	2.0	149	82	5	358	14	15	16	52	1.75
19152833--19152921	38	2.4	37	75	5	88	15	15	15	52	1.75
19155663--19155725	31	2.0	31	96	0	117	31	11	6	50	1.63
19163448--19163560	32	3.5	32	92	0	199	37	11	22	29	1.89
19165151--19165499	134	2.6	130	80	10	350	27	15	18	38	1.91
19166005--19166057	21	2.5	20	76	8	61	16	28	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19169487--19169532	19	2.4	19	96	0	83	34	21	15	28	1.94
19175001--19175102	52	2.0	52	88	3	152	28	9	25	36	1.88
19179393--19179434	19	2.2	20	95	4	77	33	26	9	30	1.88
19180210--19180272	32	2.0	32	83	0	81	39	19	14	26	1.90
19180311--19180378	32	2.1	32	86	10	95	41	25	13	20	1.88
19183861--19183914	16	3.3	16	77	10	56	72	0	0	27	0.85
19191068--19191092	8	3.1	8	100	0	50	60	0	0	40	0.97
19191458--19191511	16	3.3	16	77	10	56	72	0	0	27	0.85
19194229--19194512	141	2.0	141	99	0	559	37	15	19	27	1.92
19195776--19195829	16	3.3	16	77	10	56	72	0	0	27	0.85
19198194--19198232	21	1.9	20	84	5	51	53	2	5	38	1.37
19208774--19208945	47	3.5	49	81	7	172	31	12	18	37	1.88
19209139--19209230	21	4.3	21	73	15	66	73	3	0	22	0.97
19209178--19209231	12	4.9	11	78	15	58	77	3	0	18	0.91
19211111--19211184	32	2.3	32	85	0	94	37	22	13	25	1.91
19211093--19211285	105	1.8	105	82	4	246	39	21	13	25	1.90
19214736--19214779	16	2.6	17	80	13	56	70	0	0	29	0.88
19217409--19217506	6	15.7	6	69	20	51	18	2	4	75	1.06
19217414--19217537	15	8.3	15	70	17	55	20	2	4	73	1.11
19217403--19217488	34	2.4	34	76	18	86	17	1	5	75	1.06
19217435--19217496	33	1.9	31	83	6	79	20	1	3	74	1.05
19217594--19217651	22	2.6	23	81	10	66	31	5	5	58	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19218528--19218647	23	5.2	22	70	20	50	22	2	3	71	1.13
19218594--19218677	13	7.4	11	70	15	55	15	4	2	77	1.04
19218627--19218672	24	1.9	24	86	8	67	15	6	2	76	1.09
19218601--19218678	29	2.8	28	81	14	81	15	6	2	75	1.11
19218594--19218677	34	2.4	34	78	9	82	15	4	2	77	1.04
19218692--19219033	60	5.7	59	84	5	379	44	8	12	34	1.74
19218710--19219033	178	1.8	179	85	4	467	43	8	12	34	1.74
19221461--19221500	20	2.0	20	85	0	53	47	5	22	25	1.71
19227012--19227065	16	3.3	16	77	10	56	72	0	0	27	0.85
19229908--19229945	19	2.0	20	89	5	60	76	5	2	15	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113