genome.fa.s68.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  13  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4164551--4164576	11	2.4	11	100	0	52	34	0	57	7	1.27
4171379--4171449	36	2.0	36	94	0	124	32	12	18	36	1.88
4191929--4191969	19	2.1	19	86	4	55	21	4	0	73	1.02
4196871--4196912	20	2.1	20	100	0	84	14	4	45	35	1.66
4205513--4205548	2	18.0	2	100	0	72	50	0	0	50	1.00
4206361--4206386	2	13.0	2	100	0	52	50	0	0	50	1.00
4207463--4207506	21	2.1	21	100	0	88	36	0	0	63	0.95
4221158--4221188	13	2.4	13	94	0	53	35	6	16	41	1.74
4251481--4251505	6	4.2	6	100	0	50	48	0	0	52	1.00
4252929--4252986	25	2.3	25	81	3	71	53	3	1	41	1.28
4252916--4253019	16	6.3	16	72	6	82	50	2	3	42	1.35
4252942--4253055	8	13.9	8	67	10	52	46	7	1	44	1.40
4252933--4253018	26	3.5	24	75	10	75	51	3	2	43	1.31
4254578--4254644	5	13.8	5	81	12	52	80	0	14	4	0.86
4254579--4254644	14	4.9	14	80	5	57	80	0	15	4	0.87
4258475--4258675	65	3.1	65	86	2	260	26	19	15	38	1.91
4271425--4271580	52	3.0	52	83	4	183	26	25	7	39	1.83
4271887--4271989	25	4.2	25	78	2	109	21	33	7	37	1.82
4271985--4272069	31	2.7	31	94	0	143	22	21	23	32	1.98
4272555--4272711	52	3.0	51	77	7	163	26	21	8	43	1.80
4274729--4274782	27	2.0	27	82	13	67	48	1	0	50	1.11
4276634--4276761	62	2.1	62	89	0	193	31	23	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4277901--4277937	19	1.9	19	89	10	58	70	0	16	13	1.17
4280369--4280407	18	2.2	18	86	9	53	76	0	12	10	1.01
4281297--4281347	12	4.0	13	75	10	52	52	1	0	45	1.12
4282292--4282341	21	2.4	21	86	0	64	32	0	14	54	1.40
4283146--4283173	3	9.3	3	100	0	56	67	0	0	32	0.91
4305209--4305241	15	2.1	17	88	11	52	33	0	3	63	1.10
4320931--4320977	21	2.1	21	84	7	58	57	4	0	38	1.18
4324235--4324429	98	2.0	98	95	0	354	38	8	21	31	1.83
4329532--4329588	30	1.9	30	92	0	96	47	15	14	22	1.82
4337725--4337765	20	2.0	20	85	0	55	24	39	7	29	1.82
4338624--4338677	18	3.0	18	75	24	60	22	0	7	70	1.12
4338778--4338817	3	13.7	3	89	5	64	70	0	0	30	0.88
4338782--4338820	17	2.4	17	91	4	62	71	0	0	28	0.86
4338779--4338817	20	2.0	20	94	0	69	69	0	0	30	0.89
4339128--4339168	21	1.9	22	90	5	66	48	34	0	17	1.47
4339668--4339852	92	2.0	92	96	0	343	32	14	8	44	1.76
4344189--4344241	27	2.0	27	88	3	81	54	5	11	28	1.58
4351771--4352556	110	7.2	109	80	6	754	20	19	13	46	1.83
4352363--4352561	36	5.4	36	69	9	118	19	19	14	47	1.83
4351778--4352658	109	8.1	107	79	8	644	20	19	13	46	1.83
4351778--4352658	433	2.0	432	81	6	1057	20	19	13	46	1.83
4352587--4352814	105	2.2	105	84	3	291	21	24	10	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4352587--4352862	105	2.7	103	81	6	247	20	22	10	46	1.81
4354508--4354550	3	15.0	3	83	9	54	67	2	0	30	1.03
4354508--4354558	22	2.3	23	80	13	70	64	1	1	31	1.15
4354657--4354687	3	10.3	3	100	0	62	67	0	0	32	0.91
4354995--4355045	14	3.6	13	74	25	50	50	21	3	23	1.65
4356607--4356681	25	3.0	25	69	9	64	46	1	0	52	1.09
4360757--4360809	27	2.0	27	100	0	106	33	11	13	41	1.80
4361183--4361235	27	2.0	27	96	0	97	39	16	9	33	1.81
4364211--4364251	2	20.5	2	100	0	82	48	0	0	51	1.00
4364741--4364878	24	5.8	24	85	0	177	15	36	18	29	1.91
4364741--4364875	72	1.9	72	87	0	198	14	37	17	30	1.90
4368882--4368935	24	2.2	24	76	0	63	40	3	5	50	1.44
4371751--4371828	29	2.7	28	75	13	77	51	3	2	42	1.34
4375390--4375429	2	20.0	2	89	0	62	50	5	0	45	1.23
4377115--4377147	12	2.8	12	86	4	50	81	0	9	9	0.87
4377099--4377146	19	2.5	19	86	6	62	79	2	8	10	1.02
4377417--4377503	45	1.9	45	81	4	104	18	9	17	55	1.68
4377674--4377705	11	2.9	11	100	0	64	9	6	0	84	0.78
4377680--4377732	19	2.8	19	77	8	54	9	5	3	81	0.98
4377698--4377762	27	2.4	27	82	5	78	10	7	6	75	1.19
4377879--4377935	21	2.8	20	84	10	71	35	8	8	47	1.66
4377855--4377953	21	4.7	21	77	12	62	34	7	8	50	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4382580--4382626	22	2.1	22	88	0	67	38	2	14	44	1.58
4382838--4382881	15	2.9	15	76	10	54	36	9	6	47	1.62
4383199--4383322	64	1.9	64	85	0	167	31	10	12	45	1.77
4384710--4384751	19	2.2	20	82	4	50	14	7	4	73	1.21
4384808--4384869	28	2.2	28	83	13	74	30	3	9	56	1.47
4384915--4384973	21	2.8	21	81	2	73	33	6	10	49	1.63
4384957--4385016	21	2.8	21	84	5	75	33	6	10	50	1.62
4384909--4385016	42	2.5	43	79	11	105	33	6	9	50	1.60
4384997--4385048	19	2.7	18	76	8	50	26	3	7	61	1.41
4385097--4385428	104	3.2	103	70	18	313	45	7	8	38	1.63
4385101--4385457	103	3.4	104	71	17	324	45	7	8	38	1.62
4385097--4385534	212	2.1	213	95	0	779	45	7	7	39	1.62
4385196--4385543	109	3.2	109	70	14	333	45	7	8	38	1.63
4389028--4389069	22	1.9	23	85	9	61	45	0	2	52	1.13
4389027--4389074	22	2.2	21	78	10	53	50	0	2	47	1.12
4389025--4389079	24	2.3	24	78	12	60	54	0	1	43	1.10
4389125--4389188	32	2.0	33	84	3	85	50	1	1	46	1.20
4390676--4390701	13	2.0	13	100	0	52	69	0	30	0	0.89
4391465--4391494	2	15.0	2	100	0	60	50	0	0	50	1.00
4400070--4400104	2	18.0	2	94	5	63	51	0	0	48	1.00
4411622--4411768	71	2.1	70	91	2	233	24	12	16	46	1.82
4420987--4421017	16	1.9	16	93	0	53	29	6	0	64	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4438008--4438036	2	14.5	2	100	0	58	0	48	0	51	1.00
4439942--4440009	21	3.0	22	72	14	59	61	0	0	38	0.96
4454015--4454069	25	2.2	25	81	9	69	52	1	5	40	1.35
4454053--4454094	14	2.9	14	86	13	59	64	0	0	35	0.94
4454056--4454157	11	9.8	11	67	20	51	62	2	1	32	1.21
4454056--4454121	25	2.6	25	79	15	82	62	4	0	33	1.16
4454055--4454106	15	3.6	14	89	5	77	63	1	0	34	1.06
4454085--4454141	20	2.8	21	83	5	71	61	5	1	31	1.28
4454182--4454222	11	3.7	11	90	0	64	63	0	9	26	1.25
4459239--4459286	20	2.2	21	82	14	62	47	0	2	50	1.12
4459249--4459286	20	1.9	20	94	0	67	47	0	2	50	1.15
4463338--4463376	20	2.0	20	84	0	51	48	2	0	48	1.15
4465870--4465909	21	1.9	21	100	0	80	45	17	22	15	1.85
4476321--4476372	19	2.7	19	74	14	54	30	1	9	57	1.42
4487954--4487999	24	1.9	24	82	8	58	36	0	8	54	1.32
4491447--4491672	46	5.0	46	81	10	172	38	14	9	37	1.79
4491475--4491719	67	3.6	67	79	10	214	39	13	9	36	1.78
4491445--4491718	113	2.4	115	83	6	328	38	14	9	37	1.78
4491521--4491720	46	4.4	46	86	6	268	40	13	8	38	1.73
4491454--4491718	21	11.7	21	75	13	206	38	13	9	37	1.79
4491447--4491752	159	1.9	159	85	3	424	38	14	9	38	1.77
4492988--4493048	9	6.4	9	85	14	79	9	11	0	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4492988--4493055	10	7.1	10	84	12	90	8	11	0	79	0.94
4492976--4493039	30	2.1	31	85	8	87	10	12	0	76	1.02
4492974--4493055	31	2.9	28	74	20	50	9	13	0	76	1.01
4496939--4497031	30	3.0	31	69	12	84	38	8	3	49	1.50
4496895--4497129	60	3.9	59	81	6	260	35	9	3	50	1.54
4497154--4497197	18	2.4	19	88	7	65	72	6	4	15	1.22
4498842--4498873	12	2.5	13	95	5	57	75	0	6	18	1.01
4499141--4499172	12	2.7	12	100	0	64	40	18	9	31	1.83
4501149--4501204	22	2.6	23	81	15	66	17	3	3	75	1.10
4509107--4510008	119	7.7	117	76	12	572	34	9	5	50	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113