genome.fa.s68.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  86  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17922389--17922440	15	3.4	15	72	15	52	38	1	9	50	1.46
17924858--17924901	12	3.9	11	82	11	54	13	2	11	72	1.21
17927990--17928014	3	8.3	3	100	0	50	32	0	0	68	0.90
17928058--17928097	3	14.7	3	80	19	52	37	0	0	62	0.95
17928058--17928094	5	7.0	5	90	9	56	37	0	0	62	0.96
17939469--17939632	48	3.5	46	81	6	161	54	11	15	18	1.70
17940993--17941065	3	24.3	3	97	0	137	31	0	1	67	1.00
17942007--17942052	19	2.6	17	83	10	56	13	6	2	78	1.04
17942012--17942052	19	2.2	18	91	4	64	14	4	2	78	1.03
17944828--17945001	93	1.9	93	90	0	276	47	6	5	40	1.54
17945660--17945756	49	2.0	49	87	4	142	34	7	9	49	1.62
17947051--17947155	49	2.1	49	91	0	165	17	13	26	42	1.86
17949389--17949433	22	2.0	22	83	8	56	22	13	6	57	1.59
17952235--17952279	2	22.5	2	86	0	63	0	44	6	48	1.29
17954668--17954696	3	9.7	3	100	0	58	34	0	0	65	0.93
17955539--17955621	40	2.0	41	86	2	114	37	18	7	37	1.78
17961407--17961431	2	12.5	2	100	0	50	52	0	0	48	1.00
17961909--17962108	100	2.0	100	89	1	303	34	9	18	39	1.82
17962284--17962351	29	2.3	30	84	2	84	33	14	14	36	1.87
17963339--17963364	2	13.0	2	100	0	52	50	0	0	50	1.00
17965786--17965959	86	2.0	86	93	0	294	35	8	14	40	1.77
17970531--17970612	43	1.9	43	89	0	128	37	10	26	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17975193--17975234	21	2.0	21	85	4	57	30	4	9	54	1.53
17975202--17975241	21	2.0	19	85	9	53	32	0	10	57	1.32
17985694--17985733	19	2.1	19	90	0	62	2	12	0	85	0.71
17986026--17986051	11	2.4	11	100	0	52	7	7	0	84	0.77
17989984--17990025	18	2.3	18	87	0	57	35	4	0	59	1.19
17992550--17992595	2	23.0	2	100	0	92	50	0	50	0	1.00
17994730--17994789	24	2.5	24	78	10	61	30	40	15	15	1.87
18004982--18005063	3	28.3	3	87	7	71	32	9	0	57	1.32
18008294--18008334	20	2.0	20	90	0	64	31	12	21	34	1.91
18012092--18012126	16	2.2	16	89	0	52	40	11	11	37	1.77
18018535--18018600	3	22.0	3	100	0	132	66	0	0	33	0.92
18021515--18021550	6	6.0	6	90	0	54	0	19	2	77	0.88
18021515--18021563	24	2.0	24	84	7	64	2	22	2	73	1.04
18022512--18022566	29	1.9	29	85	3	76	49	1	1	47	1.23
18022498--18022569	29	2.4	29	73	13	74	50	1	1	47	1.18
18022576--18022634	18	3.3	18	73	17	59	47	0	1	50	1.11
18022854--18022924	19	3.8	19	70	12	58	53	4	0	42	1.20
18023211--18023245	3	11.7	3	100	0	70	31	0	0	68	0.90
18024343--18024397	18	3.4	17	72	27	57	49	9	0	41	1.34
18024327--18024396	30	2.4	30	92	2	124	48	8	0	42	1.33
18024337--18024387	14	3.5	14	72	27	52	43	7	0	49	1.32
18025167--18025199	6	5.7	6	89	3	50	18	3	0	78	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18027431--18027495	18	3.4	19	75	12	53	47	4	1	46	1.32
18028498--18028540	22	2.0	22	85	0	59	69	0	2	27	1.00
18031511--18031578	31	2.2	31	87	10	95	48	5	2	42	1.42
18031705--18031735	14	2.2	14	94	0	53	45	3	0	51	1.17
18032219--18032262	19	2.3	21	74	22	51	61	4	0	34	1.16
18039724--18039752	3	9.7	3	100	0	58	0	0	31	68	0.89
18053498--18053557	14	4.5	13	74	19	52	11	3	6	78	1.06
18053508--18053573	26	2.4	28	85	7	91	19	1	4	74	1.07
18053513--18053558	13	3.5	13	84	0	56	15	2	6	76	1.09
18053739--18053813	20	3.8	20	77	13	75	37	6	9	46	1.62
18057468--18057509	22	1.9	22	90	0	66	21	11	4	61	1.48
18059171--18059197	14	1.9	14	100	0	54	29	0	11	59	1.32
18059143--18059280	64	2.2	62	85	10	176	34	10	9	46	1.70
18059316--18059358	18	2.3	19	88	8	70	41	11	11	34	1.78
18059405--18059479	22	3.3	24	78	16	88	78	1	4	16	0.96
18059409--18059486	5	14.4	5	74	15	59	78	1	5	15	0.99
18059399--18059487	6	14.8	6	73	19	62	77	1	4	16	0.99
18059412--18059486	11	6.8	11	77	17	75	78	1	5	14	0.99
18059909--18059938	11	2.7	11	94	0	51	36	20	13	30	1.90
18060356--18060388	16	2.1	16	88	5	50	78	6	3	12	1.04
18060390--18060447	21	2.9	21	76	21	61	67	5	5	22	1.31
18060529--18060577	11	4.8	10	85	12	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18060532--18060572	14	3.1	14	83	10	52	70	0	0	29	0.87
18060546--18060640	6	16.3	6	84	8	108	76	1	2	20	0.94
18060655--18060808	77	2.0	77	90	0	245	20	27	21	31	1.98
18060867--18060906	18	2.2	18	90	4	62	5	2	5	87	0.73
18060914--18061253	42	8.1	41	89	2	473	35	22	16	24	1.94
18062256--18062370	9	13.6	8	85	14	128	11	13	0	75	1.04
18062265--18062340	8	9.7	7	87	9	55	10	11	0	77	0.99
18062256--18062370	17	6.8	16	75	11	88	11	13	0	75	1.04
18062278--18062370	9	10.4	9	88	9	138	11	12	0	75	1.05
18069115--18069311	59	3.3	58	79	12	211	35	11	8	45	1.71
18069115--18069311	58	3.3	57	80	11	209	35	11	8	45	1.71
18069287--18069330	19	2.3	19	96	0	79	43	11	11	34	1.77
18069371--18069475	17	6.5	16	76	14	83	76	0	4	18	1.02
18069381--18069460	5	15.4	5	74	19	67	78	1	5	15	0.98
18069371--18069461	6	14.8	6	73	15	62	78	1	4	16	0.98
18069381--18069475	22	4.5	22	73	17	85	76	1	5	16	1.02
18069882--18069911	11	2.7	11	94	0	51	36	20	13	30	1.90
18070329--18070361	16	2.1	16	88	5	50	78	6	3	12	1.04
18070363--18070420	21	2.9	21	76	21	61	67	5	5	22	1.31
18070505--18070549	14	3.1	14	90	3	63	73	0	0	26	0.84
18070502--18070613	5	21.0	5	77	17	86	75	0	1	21	0.94
18070502--18070613	11	10.5	10	77	19	86	75	0	1	21	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18070532--18070603	23	3.0	24	84	10	85	77	1	1	19	0.91
18070519--18070614	6	16.3	6	85	8	94	78	1	2	18	0.92
18070512--18070615	19	5.4	19	78	11	97	77	0	1	19	0.91
18070519--18070614	44	2.2	44	81	10	108	78	1	2	18	0.92
18070637--18070782	77	1.9	77	92	0	247	19	26	21	32	1.97
18070847--18070880	10	3.5	10	88	4	52	0	0	8	91	0.43
18070888--18071225	42	8.1	41	88	4	455	36	22	16	24	1.94
18070888--18071225	83	4.1	83	86	4	466	36	22	16	24	1.94
18070888--18071225	124	2.7	125	88	2	486	36	22	16	24	1.94
18072228--18072337	25	4.9	20	79	18	80	11	13	0	74	1.07
18072248--18072338	17	5.2	17	86	13	132	12	13	0	74	1.07
18072227--18072338	9	12.4	9	84	11	133	11	13	0	75	1.06
18072267--18072357	45	2.0	45	80	4	103	16	14	2	67	1.34
18088366--18088398	6	5.5	6	100	0	66	69	15	0	15	1.19
18088365--18088405	12	3.4	12	89	0	55	70	12	0	17	1.16
18088365--18088405	18	2.3	18	86	0	64	70	12	0	17	1.16
18088435--18088601	64	2.7	62	88	6	225	33	11	7	46	1.69
18088623--18088698	11	6.5	12	75	13	52	80	2	2	14	0.93
18088626--18088705	6	15.4	5	75	17	67	80	2	3	13	0.96
18088626--18088705	10	7.7	10	75	21	67	80	2	3	13	0.96
18088653--18088705	27	2.0	28	88	7	83	81	1	3	13	0.92
18089715--18089810	6	16.5	6	81	10	94	77	1	4	17	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18089695--18089799	28	3.8	27	74	18	99	74	0	2	21	1.01
18092633--18092697	32	2.0	32	85	5	87	40	15	7	36	1.76
18093524--18093584	17	3.6	16	77	16	61	78	1	1	18	0.91
18093545--18093587	6	7.0	6	81	5	50	81	2	2	13	0.89
18093525--18093585	18	3.5	17	76	17	63	80	1	1	16	0.88
18093857--18093890	16	2.1	16	88	0	50	44	0	0	55	0.99
18099158--18099194	19	1.9	20	88	5	58	0	27	0	72	0.84
18100855--18100908	28	1.9	28	84	0	72	33	12	16	37	1.87
18110742--18110810	34	1.9	37	82	8	90	53	0	0	46	1.00
18118011--18118042	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113