genome.fa.s68.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  111  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21667172--21667266	30	3.2	30	80	8	113	46	3	9	41	1.52
21670298--21670339	21	2.0	20	86	4	57	66	2	0	30	1.04
21671060--21671104	13	3.5	13	78	0	54	44	6	8	40	1.62
21678091--21678124	13	2.5	14	90	4	52	35	0	8	55	1.31
21682474--21682580	53	2.0	53	94	0	187	25	23	17	33	1.96
21684211--21684246	16	2.4	15	90	9	56	55	16	0	27	1.42
21685386--21685446	32	1.9	31	90	3	95	11	36	1	50	1.48
21691813--21691849	19	1.9	19	88	0	56	56	2	0	40	1.13
21695079--21695157	41	1.9	41	87	5	115	48	1	2	48	1.23
21697645--21697710	34	1.9	34	84	6	89	46	12	4	36	1.61
21705742--21705785	22	2.1	22	83	8	56	40	4	2	52	1.34
21706054--21706164	31	3.7	31	76	10	88	44	0	1	54	1.10
21712538--21712624	11	7.4	12	67	22	51	54	0	1	44	1.07
21712550--21712608	25	2.4	24	83	8	75	52	0	0	47	1.00
21712561--21712621	25	2.4	25	80	2	68	54	0	1	44	1.10
21713890--21713917	2	14.0	2	100	0	56	50	0	0	50	1.00
21715345--21715405	21	2.8	21	85	7	77	60	1	0	37	1.07
21715357--21715403	22	2.0	23	88	8	69	61	0	0	38	0.96
21715373--21715406	18	1.9	17	88	5	50	67	0	0	32	0.91
21715460--21715492	13	2.5	14	85	14	52	42	0	0	57	0.98
21716654--21716739	36	2.3	37	82	11	97	46	2	2	48	1.27
21716828--21716889	19	3.2	18	77	11	61	61	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21716898--21716961	32	2.0	32	81	6	76	46	6	0	46	1.27
21717414--21717438	7	3.6	7	100	0	50	0	0	12	88	0.53
21722995--21723234	119	2.0	119	94	1	419	35	17	17	30	1.92
21728253--21728293	20	2.0	21	86	13	59	9	31	4	53	1.55
21731150--21731208	29	2.1	29	81	9	68	49	3	3	44	1.36
21740890--21741007	28	4.2	28	64	21	66	44	2	5	47	1.41
21740895--21741050	85	1.8	85	95	0	285	46	3	6	44	1.45
21745657--21745696	19	2.0	20	85	9	55	22	0	2	75	0.93
21747200--21747249	25	2.0	25	96	0	91	38	16	22	24	1.93
21751411--21751447	11	3.5	11	96	3	67	54	10	8	27	1.63
21761036--21761138	34	2.9	35	74	13	97	51	0	0	48	1.00
21761045--21761095	15	3.1	15	81	13	57	52	0	0	47	1.00
21761198--21761270	34	2.0	34	84	10	92	45	0	2	52	1.15
21761182--21761247	23	2.9	22	75	20	64	43	0	3	53	1.16
21761198--21761256	18	3.2	18	80	11	66	44	0	1	54	1.10
21761680--21761737	21	2.5	21	83	13	62	50	0	0	50	1.00
21762058--21762097	2	20.0	2	100	0	80	50	0	0	50	1.00
21767643--21767696	27	2.0	26	85	3	72	61	0	3	35	1.14
21767847--21767960	57	2.0	57	96	0	210	34	7	17	41	1.77
21775388--21775422	18	1.9	18	88	0	52	68	0	2	28	1.04
21775668--21775736	33	2.1	33	86	10	97	44	0	4	50	1.21
21778817--21779020	88	2.3	88	82	6	229	44	4	4	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21779258--21779307	12	4.2	12	73	14	50	58	2	2	38	1.21
21790534--21790582	18	2.5	21	87	12	77	61	0	0	38	0.96
21794038--21794063	2	13.0	2	100	0	52	50	0	0	50	1.00
21806045--21806082	7	5.4	7	93	0	67	0	39	13	47	1.42
21813281--21813312	4	8.0	4	100	0	64	50	25	0	25	1.50
21813410--21813453	21	2.1	21	91	0	70	25	13	13	47	1.79
21822453--21822494	19	2.2	20	83	8	52	40	14	2	42	1.58
21828804--21829082	139	2.0	139	98	0	540	23	30	11	34	1.90
21832130--21832161	4	8.0	4	100	0	64	50	25	0	25	1.50
21832259--21832302	21	2.1	21	91	0	70	25	13	13	47	1.79
21841295--21841336	19	2.2	20	83	8	52	40	14	2	42	1.58
21845078--21845107	15	2.0	15	93	0	51	33	0	3	63	1.11
21847570--21847594	12	2.1	12	100	0	50	60	16	8	16	1.58
21848186--21848242	16	3.7	15	72	9	60	43	5	0	50	1.24
21852835--21852881	20	2.3	21	88	3	69	46	0	4	48	1.21
21853680--21853724	22	2.0	24	86	8	67	48	0	0	51	1.00
21853754--21853799	10	4.7	10	81	5	58	63	0	0	36	0.95
21853756--21853799	20	2.2	20	92	4	72	65	0	0	34	0.93
21862187--21862244	23	2.7	21	79	10	64	44	1	5	48	1.35
21862188--21862231	23	1.9	23	90	0	70	43	0	6	50	1.29
21864154--21864187	17	2.1	15	89	10	50	35	0	2	61	1.11
21869105--21869129	12	2.1	12	100	0	50	64	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21881275--21881349	30	2.5	30	82	4	89	40	6	16	37	1.74
21883986--21884031	20	2.3	20	84	0	56	56	2	2	39	1.24
21884001--21884038	20	1.9	20	88	0	58	57	2	2	36	1.26
21884098--21884174	16	4.6	16	71	18	59	48	2	1	48	1.23
21884081--21884123	19	2.3	19	84	8	52	44	0	2	53	1.13
21884145--21884210	26	2.6	26	88	9	100	51	1	0	46	1.10
21884098--21884202	17	6.7	16	68	25	64	48	1	0	48	1.18
21888477--21888505	3	9.7	3	100	0	58	65	0	0	34	0.93
21888802--21888844	19	2.3	19	92	4	70	55	4	4	34	1.41
21888961--21888989	14	2.1	14	93	6	51	58	0	0	41	0.98
21894884--21895509	309	2.0	308	86	3	864	39	11	13	35	1.81
21895202--21896448	358	3.5	355	83	4	1494	38	12	12	36	1.81
21903621--21903666	19	2.4	20	82	10	60	80	6	0	13	0.89
21903636--21903672	19	1.9	19	88	0	56	83	5	2	8	0.88
21904644--21904961	39	8.2	38	78	5	242	41	20	11	26	1.86
21904655--21904962	78	4.0	77	84	4	343	41	21	12	25	1.87
21904679--21904995	39	8.3	38	77	5	257	41	21	11	25	1.86
21904714--21904995	116	2.5	113	80	5	300	41	21	11	25	1.86
21905098--21905212	41	2.9	40	87	6	162	40	18	14	26	1.89
21918053--21918101	18	2.6	19	83	3	64	51	24	6	18	1.69
21918561--21918599	3	12.7	3	94	5	69	66	0	0	33	0.92
21920180--21920501	134	2.4	134	80	6	364	34	20	15	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21924851--21924882	2	16.0	2	100	0	64	0	0	50	50	1.00
21924901--21924925	11	2.3	11	100	0	50	32	16	20	32	1.94
21936106--21936130	13	1.9	13	100	0	50	44	16	8	32	1.76
21939615--21939664	13	3.9	13	76	10	50	52	0	2	46	1.12
21941932--21941984	19	2.8	17	72	22	52	41	1	0	56	1.10
21942835--21942877	21	2.0	22	86	4	61	41	0	2	55	1.12
21943111--21943145	12	2.9	12	84	16	54	74	0	0	25	0.82
21943110--21943146	18	2.1	18	89	0	56	70	0	0	29	0.88
21943136--21943175	21	1.9	21	84	0	53	55	2	5	37	1.35
21949381--21949433	19	2.9	19	78	18	67	71	0	1	26	0.96
21949390--21949429	17	2.3	18	87	12	57	72	0	2	25	0.97
21953440--21953524	44	1.9	44	95	0	152	25	9	9	55	1.62
21953935--21954026	44	2.1	44	93	0	157	28	8	8	54	1.61
21956655--21956722	26	2.6	25	80	15	93	50	0	2	47	1.16
21956743--21956788	19	2.4	18	85	7	56	56	0	0	43	0.99
21956837--21956925	23	4.4	20	75	14	76	46	2	2	49	1.26
21956837--21956921	44	2.0	43	83	6	109	44	2	2	50	1.27
21956890--21956931	17	2.7	15	82	13	57	47	2	0	50	1.14
21956837--21956908	20	3.4	21	76	16	60	45	1	2	50	1.25
21960785--21960828	22	2.0	22	95	0	79	43	13	11	31	1.80
21964179--21964229	23	2.2	23	82	0	57	11	13	39	35	1.82
21964191--21964240	23	2.2	23	100	0	100	10	22	34	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21964498--21964556	25	2.4	25	86	5	77	40	18	27	13	1.88
21964705--21964748	22	2.0	22	95	0	79	43	13	11	31	1.80
21967197--21967255	25	2.5	24	86	5	75	25	22	15	37	1.93
21971629--21971670	16	2.7	15	88	7	57	7	42	0	50	1.30
21978681--21978905	114	2.0	113	83	0	279	44	16	9	29	1.79
21980449--21980480	13	2.5	13	94	0	55	84	3	0	12	0.74
21985918--21985965	21	2.3	21	85	0	60	35	20	4	39	1.72
21989042--21989111	23	3.1	21	86	10	70	55	1	1	41	1.17
21989035--21989100	35	1.9	33	81	6	78	56	1	3	39	1.24
21989054--21989138	24	3.5	25	84	10	106	50	2	4	42	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113