genome.fa.s68.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  97  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19701719--19701917	103	1.9	102	83	5	258	37	3	3	55	1.32
19703217--19703256	20	2.0	21	85	9	57	47	12	0	40	1.41
19713246--19713281	2	18.0	2	100	0	72	50	0	0	50	1.00
19715259--19715289	16	1.9	16	93	0	53	61	6	6	25	1.45
19715329--19715361	9	3.7	9	95	0	57	84	3	0	12	0.72
19716425--19716468	16	2.7	16	75	3	52	47	0	2	50	1.13
19716578--19716616	21	1.9	20	84	5	51	58	2	0	38	1.12
19716817--19716857	2	21.5	2	85	9	59	46	0	0	53	1.00
19719494--19719553	12	4.7	12	72	22	50	60	5	1	33	1.29
19720639--19720695	21	2.8	20	84	7	69	29	0	0	70	0.88
19720619--19720702	21	3.9	21	72	19	66	33	3	0	63	1.12
19720686--19720750	21	3.0	21	72	4	58	49	1	1	47	1.20
19723040--19723080	18	2.3	18	95	0	73	26	4	31	36	1.78
19726217--19726245	14	2.0	15	93	6	51	62	0	0	37	0.96
19736163--19736209	26	1.9	25	83	12	62	42	0	4	53	1.20
19746489--19746536	22	2.1	22	88	7	69	60	2	0	37	1.09
19747608--19747642	17	2.1	17	88	0	52	34	2	0	62	1.10
19747742--19747825	32	2.7	31	80	10	102	45	2	3	48	1.32
19747977--19748057	30	2.8	27	77	14	90	28	3	3	64	1.28
19748582--19748641	31	1.9	31	93	0	102	51	6	3	38	1.45
19750228--19750281	24	2.2	24	96	0	99	18	18	14	48	1.82
19750503--19750570	3	23.0	3	82	11	79	29	1	2	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19750503--19750572	31	2.4	28	76	19	70	28	1	2	67	1.14
19750533--19750585	14	3.8	14	83	14	65	24	5	0	69	1.09
19750514--19750594	28	2.9	28	82	8	87	27	3	3	65	1.26
19755154--19755204	20	2.5	20	78	9	59	70	7	17	3	1.27
19755554--19755680	10	12.2	10	69	12	60	78	1	11	8	1.02
19755592--19755689	32	3.1	31	77	12	110	77	0	14	8	0.98
19755592--19755638	21	2.3	20	96	3	85	82	0	12	4	0.80
19755633--19755700	24	2.8	24	80	6	75	73	0	16	10	1.09
19755659--19755700	17	2.5	17	88	11	61	76	0	14	9	1.02
19755592--19755680	10	8.3	10	71	18	63	77	0	14	7	0.98
19756867--19756931	20	3.2	21	78	4	80	36	10	13	38	1.80
19757160--19757238	41	1.9	41	86	0	113	39	6	18	35	1.77
19757361--19757705	42	8.4	42	83	4	382	26	13	19	40	1.89
19757363--19757705	83	4.2	84	87	4	445	26	13	19	40	1.88
19757364--19757712	125	2.8	126	82	7	396	26	13	18	40	1.88
19757724--19757834	45	2.5	45	85	8	147	24	13	19	42	1.87
19757847--19757886	1	40.0	1	84	0	53	92	5	0	2	0.45
19757844--19757886	10	4.2	10	88	5	68	90	6	0	2	0.52
19757844--19757886	21	2.0	21	95	0	77	90	6	0	2	0.52
19758066--19758160	3	31.7	3	80	10	97	30	2	2	65	1.16
19758102--19758194	14	6.6	14	71	16	59	27	4	1	66	1.17
19758099--19758150	17	3.1	17	91	2	79	28	3	0	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19758102--19758162	31	2.0	30	83	3	77	27	3	0	68	1.05
19758096--19758158	17	3.6	18	85	12	78	30	3	0	66	1.07
19758062--19758174	17	6.8	16	75	9	66	28	2	1	67	1.14
19759112--19759323	68	3.3	66	73	17	185	47	5	10	36	1.62
19761138--19761172	16	2.2	16	100	0	70	48	5	8	37	1.58
19763771--19764379	56	10.6	57	80	7	590	44	7	12	35	1.70
19768788--19768813	11	2.4	11	100	0	52	92	0	0	7	0.39
19770411--19770494	41	2.0	41	84	4	107	22	17	20	39	1.92
19770442--19770548	54	2.0	54	94	0	187	22	15	22	39	1.92
19770496--19770845	42	8.4	41	90	3	529	24	17	21	36	1.95
19770850--19770927	1	78.0	1	77	0	75	88	10	1	0	0.57
19770853--19770924	7	10.9	7	83	16	100	87	11	1	0	0.61
19770853--19770927	20	3.8	20	89	3	125	88	10	1	0	0.59
19771555--19771617	32	2.0	31	87	3	90	52	4	31	11	1.58
19773205--19773531	59	5.6	59	83	6	391	36	13	8	41	1.76
19773566--19773658	5	18.2	5	79	13	93	77	2	4	16	1.02
19773566--19773658	42	2.1	43	86	9	127	77	2	4	16	1.02
19773683--19773730	12	3.8	12	80	5	51	77	4	2	16	1.03
19774066--19774111	20	2.3	20	88	3	67	19	15	17	47	1.82
19774545--19774638	21	4.3	21	75	17	77	69	7	5	18	1.32
19774545--19774655	22	5.1	21	73	17	75	67	7	4	20	1.33
19774731--19774838	5	21.0	5	75	17	71	75	1	2	19	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19774727--19774849	44	2.8	42	81	7	129	76	1	4	17	1.03
19774786--19774838	21	2.5	22	78	12	65	77	1	1	18	0.96
19774730--19774837	6	16.7	6	72	14	56	76	1	2	18	0.99
19775050--19775156	43	2.5	43	81	1	117	40	20	15	23	1.91
19775112--19775501	41	9.4	41	89	2	566	37	22	16	23	1.93
19775111--19775501	166	2.4	165	90	2	613	37	22	16	23	1.93
19776747--19776821	17	4.4	16	71	25	57	8	18	0	73	1.07
19777149--19777176	10	2.8	10	100	0	56	0	7	0	92	0.37
19777149--19777183	11	3.3	11	92	4	54	2	5	0	91	0.50
19780730--19780934	57	3.6	57	82	11	249	38	14	5	41	1.70
19780730--19780946	116	1.9	114	88	3	328	36	13	6	43	1.70
19782626--19782689	5	12.2	5	78	15	67	17	4	1	76	1.03
19782626--19782689	27	2.4	26	89	2	92	17	4	1	76	1.03
19782626--19782693	16	4.2	16	80	15	70	17	4	1	76	1.03
19782713--19782999	59	4.8	59	83	8	339	41	6	12	40	1.68
19782714--19782999	58	4.8	58	84	8	342	40	6	12	40	1.68
19782714--19782953	58	4.1	58	88	4	356	44	6	11	37	1.67
19794465--19794707	41	5.8	42	82	6	187	25	15	22	37	1.93
19794481--19794707	42	5.4	41	80	5	188	25	15	22	36	1.94
19794481--19794662	83	2.2	83	79	5	199	26	15	21	36	1.93
19794636--19794728	43	2.1	45	90	4	145	23	18	20	37	1.94
19794636--19794742	43	2.4	43	85	3	124	22	16	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19794965--19795039	22	3.4	21	80	10	80	21	2	1	74	1.01
19794967--19795039	7	10.0	7	76	8	65	20	2	1	75	1.00
19794967--19795039	15	5.0	14	77	8	65	20	2	1	75	1.00
19794963--19795113	4	38.5	4	71	21	81	26	3	0	69	1.08
19795027--19795120	37	2.6	36	82	12	111	30	3	1	64	1.16
19794967--19795130	29	5.4	30	72	21	119	26	3	1	68	1.14
19795024--19795130	16	6.8	17	73	17	56	30	3	0	64	1.17
19796070--19796123	5	10.4	5	83	13	65	16	3	0	79	0.87
19796154--19796279	60	2.1	60	83	0	153	46	6	11	35	1.65
19798489--19798519	15	2.0	16	93	6	55	83	0	3	12	0.75
19798550--19798873	59	5.5	59	86	4	390	35	13	6	44	1.71
19798550--19798869	117	2.7	116	85	6	403	35	13	6	44	1.70
19799149--19799197	26	2.0	24	84	15	64	53	18	2	26	1.56
19799473--19799522	19	2.5	20	83	9	66	70	6	12	12	1.34
19799475--19799517	19	2.3	19	91	0	68	69	6	9	13	1.35
19799519--19799599	21	3.9	21	75	12	78	72	1	3	22	1.07
19799519--19799600	42	2.0	42	85	4	112	73	1	3	21	1.06
19799519--19799625	22	5.1	21	77	10	87	69	1	2	26	1.13
19799575--19799638	17	3.5	18	79	14	69	65	3	1	29	1.17
19799732--19799770	17	2.5	15	88	12	53	79	0	0	20	0.73
19799926--19799978	10	5.3	10	82	8	72	1	1	9	86	0.71
19799920--19799978	20	3.0	20	82	2	84	3	1	8	86	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19800041--19800158	41	2.9	41	93	0	200	34	22	18	24	1.96
19801145--19801218	7	10.3	7	79	17	73	12	12	0	75	1.04
19801160--19801219	8	7.8	8	85	10	81	11	10	0	78	0.97
19801161--19801219	23	2.5	24	89	8	95	11	10	0	77	0.98
19811693--19811723	16	1.9	16	93	0	53	38	0	3	58	1.15
19811609--19812120	119	4.3	116	85	9	653	35	12	6	45	1.69
19811609--19812120	59	8.7	58	85	7	589	35	12	6	45	1.69
19811607--19812120	178	2.9	176	85	9	665	35	12	7	44	1.69
19812185--19812223	17	2.3	17	81	0	51	76	2	7	12	1.09
19813137--19813223	21	4.0	22	80	7	90	67	2	3	26	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113